{ "bcoid": "GLY_000118", "title": "Mouse UniProtKB Xref PANTHER", "description": "The Mouse UniProtKB Xref PANTHER contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH26-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_panther", "PTHR10766", "PTHR10766" ], [ "Q8BH26-1", "protein_xref_panther", "PTHR31925", "PTHR31925" ], [ "E9Q3P4-1", "protein_xref_panther", "PTHR18874", "PTHR18874" ], [ "P03899-1", "protein_xref_panther", "PTHR11058", "PTHR11058" ], [ "Q9CWR0-1", "protein_xref_panther", "PTHR22826:SF117", "PTHR22826:SF117" ], [ "O35153-1", "protein_xref_panther", "PTHR12791", "PTHR12791" ], [ "Q91YE9-1", "protein_xref_panther", "PTHR31367", "PTHR31367" ], [ "Q02853-1", "protein_xref_panther", "PTHR10201:SF20", "PTHR10201:SF20" ], [ "P52479-1", "protein_xref_panther", "PTHR13328:SF5", "PTHR13328:SF5" ], [ "P02762-1", "protein_xref_panther", "PTHR11430", "PTHR11430" ], [ "Q9QYH6-1", "protein_xref_panther", "PTHR11736", "PTHR11736" ], [ "Q9QYH6-1", "protein_xref_panther", "PTHR11736:SF28", "PTHR11736:SF28" ], [ "Q5EBH1-1", "protein_xref_panther", "PTHR22738", "PTHR22738" ], [ "Q5EBH1-1", "protein_xref_panther", "PTHR22738:SF9", "PTHR22738:SF9" ], [ "Q8BTY1-1", "protein_xref_panther", "PTHR43807:SF14", "PTHR43807:SF14" ], [ "Q5SRT8-1", "protein_xref_panther", "PTHR10177", "PTHR10177" ], [ "P10852-1", "protein_xref_panther", "PTHR46673", "PTHR46673" ], [ "Q9EP79-1", "protein_xref_panther", "PTHR24062", "PTHR24062" ], [ "Q3URK3-1", "protein_xref_panther", "PTHR23358", "PTHR23358" ], [ "Q9EP72-1", "protein_xref_panther", "PTHR13605", "PTHR13605" ], [ "Q9EP71-1", "protein_xref_panther", "PTHR24129", "PTHR24129" ], [ "D3YWQ0-1", "protein_xref_panther", "PTHR11255", "PTHR11255" ], [ "P30282-1", "protein_xref_panther", "PTHR10177:SF65", "PTHR10177:SF65" ], [ "P30282-1", "protein_xref_panther", "PTHR10177", "PTHR10177" ], [ "P97411-1", "protein_xref_panther", "PTHR10164:SF3", "PTHR10164:SF3" ], [ "P97411-1", "protein_xref_panther", "PTHR10164", "PTHR10164" ], [ "Q3UHI0-1", "protein_xref_panther", "PTHR22461", "PTHR22461" ], [ "Q3UHI0-1", "protein_xref_panther", "PTHR22461:SF2", "PTHR22461:SF2" ], [ "P53702-1", "protein_xref_panther", "PTHR12743", "PTHR12743" ], [ "Q9Z2V6-1", "protein_xref_panther", "PTHR45364:SF2", "PTHR45364:SF2" ], [ "Q9Z2V6-1", "protein_xref_panther", "PTHR45364", "PTHR45364" ], [ "O08915-1", "protein_xref_panther", "PTHR11242:SF3", "PTHR11242:SF3" ], [ "O08915-1", "protein_xref_panther", "PTHR11242", "PTHR11242" ], [ "O08914-1", "protein_xref_panther", "PTHR45847:SF3", "PTHR45847:SF3" ], [ "O08917-1", "protein_xref_panther", "PTHR13806", "PTHR13806" ], [ "O08918-1", "protein_xref_panther", "PTHR10177:SF60", "PTHR10177:SF60" ], [ "O08918-1", "protein_xref_panther", "PTHR10177", "PTHR10177" ], [ "Q80WC1-1", "protein_xref_panther", "PTHR21669:SF10", "PTHR21669:SF10" ], [ "Q9CQA0-1", "protein_xref_panther", "PTHR34436", "PTHR34436" ], [ "Q91VH6-1", "protein_xref_panther", "PTHR11060", "PTHR11060" ], [ "Q8C0L9-1", "protein_xref_panther", "PTHR22958:SF1", "PTHR22958:SF1" ], [ "Q66GT5-1", "protein_xref_panther", "PTHR46712", "PTHR46712" ], [ "Q8BTJ4-1", "protein_xref_panther", "PTHR10151:SF79", "PTHR10151:SF79" ], [ "Q3TX08-1", "protein_xref_panther", "PTHR10631", "PTHR10631" ], [ "P04760-1", "protein_xref_panther", "PTHR18945", "PTHR18945" ], [ "Q91UZ1-1", "protein_xref_panther", "PTHR10336", "PTHR10336" ], [ "Q61418-1", "protein_xref_panther", "PTHR45711:SF2", "PTHR45711:SF2" ], [ "Q91UZ1-1", "protein_xref_panther", "PTHR10336", "PTHR10336" ], [ "Q9D387-1", "protein_xref_panther", "PTHR11506", "PTHR11506" ], [ "Q3V3Q4-1", "protein_xref_panther", "PTHR12200", "PTHR12200" ], [ "Q3V3Q7-1", "protein_xref_panther", "PTHR13280", "PTHR13280" ], [ "Q9D516-1", "protein_xref_panther", "PTHR12111", "PTHR12111" ], [ "Q9D518-1", "protein_xref_panther", "PTHR33560", "PTHR33560" ], [ "Q9D519-1", "protein_xref_panther", "PTHR12002", "PTHR12002" ], [ "Q8K2M0-1", "protein_xref_panther", "PTHR11362", "PTHR11362" ], [ "Q8K2M3-1", "protein_xref_panther", "PTHR28626", "PTHR28626" ], [ "P70331-1", "protein_xref_panther", "PTHR15304", "PTHR15304" ], [ "D3Z6Q9-1", "protein_xref_panther", "PTHR46514:SF1", "PTHR46514:SF1" ], [ "Q9R210-1", "protein_xref_panther", "PTHR45776:SF5", "PTHR45776:SF5" ], [ "Q6P8I4-1", "protein_xref_panther", "PTHR16523", "PTHR16523" ], [ "Q8BLQ7-1", "protein_xref_panther", "PTHR43243:SF20", "PTHR43243:SF20" ], [ "Q14BV6-1", "protein_xref_panther", "PTHR31609", "PTHR31609" ], [ "Q8BWU3-1", "protein_xref_panther", "PTHR15736", "PTHR15736" ], [ "Q7TQ33-1", "protein_xref_panther", "PTHR31428:SF5", "PTHR31428:SF5" ], [ "Q7TQ33-1", "protein_xref_panther", "PTHR31428", "PTHR31428" ], [ "Q9Z1T1-1", "protein_xref_panther", "PTHR11134", "PTHR11134" ], [ "P70323-1", "protein_xref_panther", "PTHR11267", "PTHR11267" ], [ "Q8CHC4-1", "protein_xref_panther", "PTHR11200:SF158", "PTHR11200:SF158" ], [ "Q8K2J4-1", "protein_xref_panther", "PTHR22367", "PTHR22367" ], [ "A2RSY6-1", "protein_xref_panther", "PTHR10631", "PTHR10631" ], [ "Q8CB67-1", "protein_xref_panther", "PTHR46876", "PTHR46876" ], [ "Q80VU4-1", "protein_xref_panther", "PTHR11589:SF8", "PTHR11589:SF8" ], [ "Q80VU4-1", "protein_xref_panther", "PTHR11589", "PTHR11589" ], [ "L0N7N1-1", "protein_xref_panther", "PTHR24115", "PTHR24115" ], [ "Q8VC04-1", "protein_xref_panther", "PTHR28556", "PTHR28556" ], [ "P22727-1", "protein_xref_panther", "PTHR12027", "PTHR12027" ], [ "Q9R061-1", "protein_xref_panther", "PTHR23264", "PTHR23264" ], [ "P59672-1", "protein_xref_panther", "PTHR24174:SF4", "PTHR24174:SF4" ], [ "Q8BGW1-1", "protein_xref_panther", "PTHR31291", "PTHR31291" ], [ "Q8BGW0-1", "protein_xref_panther", "PTHR15215", "PTHR15215" ], [ "Q8BGW3-1", "protein_xref_panther", "PTHR19290:SF53", "PTHR19290:SF53" ], [ "Q8BGW8-1", "protein_xref_panther", "PTHR15950", "PTHR15950" ], [ "Q497P3-1", "protein_xref_panther", "PTHR17149", "PTHR17149" ], [ "D3Z338-1", "protein_xref_panther", "PTHR37998", "PTHR37998" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref PANTHER\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T15:06:27.574866\n\nModified on\n - 2022-01-19T10:47:54.135913\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref PANTHER contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products. \n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/mouse_protein_masterlist.csv\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_panther.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_xref_panther.csv\n Name: mouse_protein_xref_panther.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_xref_panther.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/mouse_protein_xref_panther.csv" }