{ "bcoid": "GLY_000099", "title": "Human UniProtKB Xref ChEMBL", "description": "The Human UniprotKB Xref ChEMBL contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_chembl.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Chembl cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q96J66-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_chembl", "CHEMBL1075126", "" ], [ "Q96J66-1", "protein_xref_chembl", "CHEMBL2073702", "" ], [ "Q99519-1", "protein_xref_chembl", "CHEMBL2726", "" ], [ "Q96RU2-1", "protein_xref_chembl", "CHEMBL2157853", "" ], [ "Q96RU8-1", "protein_xref_chembl", "CHEMBL4524042", "" ], [ "Q9Y294-1", "protein_xref_chembl", "CHEMBL3392950", "" ], [ "O00505-1", "protein_xref_chembl", "CHEMBL4523119", "" ], [ "Q8IYD1-1", "protein_xref_chembl", "CHEMBL4105974", "" ], [ "P24903-1", "protein_xref_chembl", "CHEMBL4523986", "" ], [ "P45984-1", "protein_xref_chembl", "CHEMBL4179", "" ], [ "Q9UEF7-1", "protein_xref_chembl", "CHEMBL4523485", "" ], [ "Q9H237-1", "protein_xref_chembl", "CHEMBL1255163", "" ], [ "Q9NPI8-1", "protein_xref_chembl", "CHEMBL2157856", "" ], [ "Q9NPI1-1", "protein_xref_chembl", "CHEMBL3085622", "" ], [ "Q05397-1", "protein_xref_chembl", "CHEMBL2695", "" ], [ "Q6P1M0-1", "protein_xref_chembl", "CHEMBL4327", "" ], [ "O43598-1", "protein_xref_chembl", "CHEMBL3351218", "" ], [ "O43592-1", "protein_xref_chembl", "CHEMBL4105803", "" ], [ "P21964-1", "protein_xref_chembl", "CHEMBL2023", "" ], [ "Q6P988-1", "protein_xref_chembl", "CHEMBL3714531", "" ], [ "Q99518-1", "protein_xref_chembl", "CHEMBL3542432", "" ], [ "O60583-1", "protein_xref_chembl", "CHEMBL4523631", "" ], [ "P01042-1", "protein_xref_chembl", "CHEMBL3638337", "" ], [ "P09693-1", "protein_xref_chembl", "CHEMBL2364168", "" ], [ "Q9P1Z3-1", "protein_xref_chembl", "CHEMBL1795173", "" ], [ "P19404-1", "protein_xref_chembl", "CHEMBL2363065", "" ], [ "Q6UXS9-1", "protein_xref_chembl", "CHEMBL3831289", "" ], [ "P05412-1", "protein_xref_chembl", "CHEMBL4977", "" ], [ "P05413-1", "protein_xref_chembl", "CHEMBL3344", "" ], [ "Q9H5X1-1", "protein_xref_chembl", "CHEMBL4295943", "" ], [ "Q9NR71-1", "protein_xref_chembl", "CHEMBL2021754", "" ], [ "P55789-1", "protein_xref_chembl", "CHEMBL1741189", "" ], [ "P55786-1", "protein_xref_chembl", "CHEMBL2264", "" ], [ "P13667-1", "protein_xref_chembl", "CHEMBL4295717", "" ], [ "P31689-1", "protein_xref_chembl", "CHEMBL2189122", "" ], [ "P35414-1", "protein_xref_chembl", "CHEMBL1628481", "" ], [ "P35410-1", "protein_xref_chembl", "CHEMBL4523857", "" ], [ "Q9BYW2-1", "protein_xref_chembl", "CHEMBL3108647", "" ], [ "O00506-1", "protein_xref_chembl", "CHEMBL5552", "" ], [ "O60462-1", "protein_xref_chembl", "CHEMBL4295667", "" ], [ "P08684-1", "protein_xref_chembl", "CHEMBL340", "" ], [ "P08686-1", "protein_xref_chembl", "CHEMBL2759", "" ], [ "P05556-1", "protein_xref_chembl", "CHEMBL1905", "" ], [ "Q02218-1", "protein_xref_chembl", "CHEMBL2816", "" ], [ "P36941-1", "protein_xref_chembl", "CHEMBL1250360", "" ], [ "O43148-1", "protein_xref_chembl", "CHEMBL4295662", "" ], [ "O43143-1", "protein_xref_chembl", "CHEMBL4295661", "" ], [ "Q9Y263-1", "protein_xref_chembl", "CHEMBL6114", "" ], [ "P30085-1", "protein_xref_chembl", "CHEMBL5681", "" ], [ "P30084-1", "protein_xref_chembl", "CHEMBL4523211", "" ], [ "P30086-1", "protein_xref_chembl", "CHEMBL4105856", "" ], [ "P08962-1", "protein_xref_chembl", "CHEMBL3713303", "" ], [ "P31350-1", "protein_xref_chembl", "CHEMBL1954", "" ], [ "P07437-1", "protein_xref_chembl", "CHEMBL5444", "" ], [ "P15498-1", "protein_xref_chembl", "CHEMBL3259472", "" ], [ "Q86TP1-1", "protein_xref_chembl", "CHEMBL2079850", "" ], [ "Q6P0Q8-1", "protein_xref_chembl", "CHEMBL2417355", "" ], [ "A6NMZ7-1", "protein_xref_chembl", "CHEMBL2364188", "" ], [ "Q8WWT9-1", "protein_xref_chembl", "CHEMBL3712947", "" ], [ "Q8WXS5-1", "protein_xref_chembl", "CHEMBL4296110", "" ], [ "P09958-1", "protein_xref_chembl", "CHEMBL2611", "" ], [ "P15514-1", "protein_xref_chembl", "CHEMBL3731", "" ], [ "Q16850-1", "protein_xref_chembl", "CHEMBL3849", "" ], [ "Q16853-1", "protein_xref_chembl", "CHEMBL3437", "" ], [ "Q16854-1", "protein_xref_chembl", "CHEMBL5997", "" ], [ "A5YKK6-1", "protein_xref_chembl", "CHEMBL4105919", "" ], [ "P11511-1", "protein_xref_chembl", "CHEMBL1978", "" ], [ "O15527-1", "protein_xref_chembl", "CHEMBL3396944", "" ], [ "O15528-1", "protein_xref_chembl", "CHEMBL5993", "" ], [ "Q86V24-1", "protein_xref_chembl", "CHEMBL3392947", "" ], [ "Q6W5P4-1", "protein_xref_chembl", "CHEMBL5162", "" ], [ "Q9NQZ5-1", "protein_xref_chembl", "CHEMBL3399912", "" ], [ "Q6PEY2-1", "protein_xref_chembl", "CHEMBL2095182", "" ], [ "P62942-1", "protein_xref_chembl", "CHEMBL1902", "" ], [ "Q12794-1", "protein_xref_chembl", "CHEMBL4528", "" ], [ "Q12791-1", "protein_xref_chembl", "CHEMBL4304", "" ], [ "P62191-1", "protein_xref_chembl", "CHEMBL2364701", "" ], [ "P62195-1", "protein_xref_chembl", "CHEMBL2364701", "" ], [ "P51589-1", "protein_xref_chembl", "CHEMBL3491", "" ], [ "P51580-1", "protein_xref_chembl", "CHEMBL2500", "" ], [ "P51582-1", "protein_xref_chembl", "CHEMBL2123", "" ], [ "Q9Y6W8-1", "protein_xref_chembl", "CHEMBL3712953", "" ], [ "Q9Y6W6-1", "protein_xref_chembl", "CHEMBL2396511", "" ], [ "Q96SN7-1", "protein_xref_chembl", "CHEMBL3038476", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref ChEMBL\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T12:09:44.596916\n\nModified on\n - 2020-04-10T11:33:38.480380\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniprotKB Xref ChEMBL contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to ChEMBL database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - ChEMBL or ChEMBLdb is a manually curated chemical database of bioactive molecules with drug-like properties.\n\nDescription Domain\n Keywords\n - bioactivity\n - ChEMBL\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to ChEMBL database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_chembl.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_chembl.csv\n Name: human_protein_xref_chembl.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_chembl.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_chembl.csv" }