{ "bcoid": "GLY_000092", "title": "Human UniProtKB Xref BioMuta", "description": "The Human UniprotKB Xref BioMuta contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_biomuta.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Biomuta", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q96J66-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_biomuta", "P30613", "" ], [ "Q96J66-1", "protein_xref_biomuta", "Q96J66", "" ], [ "Q96J65-1", "protein_xref_biomuta", "Q96J65", "" ], [ "P40424-1", "protein_xref_biomuta", "P40424", "" ], [ "P40425-1", "protein_xref_biomuta", "P40425", "" ], [ "P40426-1", "protein_xref_biomuta", "P40426", "" ], [ "P40429-1", "protein_xref_biomuta", "P40429", "" ], [ "Q9H2I8-1", "protein_xref_biomuta", "Q9H2I8", "" ], [ "H0YL14-1", "protein_xref_biomuta", "H0YL14", "" ], [ "Q9BXR3-1", "protein_xref_biomuta", "Q69384", "" ], [ "Q9BXR3-1", "protein_xref_biomuta", "Q69383", "" ], [ "Q5VVP1-1", "protein_xref_biomuta", "Q5VVP1", "" ], [ "Q8N865-1", "protein_xref_biomuta", "Q8N865", "" ], [ "A6NIR3-1", "protein_xref_biomuta", "A6NIR3", "" ], [ "Q86VY4-1", "protein_xref_biomuta", "Q86VY4", "" ], [ "Q86VY9-1", "protein_xref_biomuta", "Q86VY9", "" ], [ "Q9Y5S9-1", "protein_xref_biomuta", "Q9Y5S9", "" ], [ "P19075-1", "protein_xref_biomuta", "P19075", "" ], [ "Q99519-1", "protein_xref_biomuta", "Q99519", "" ], [ "O15417-1", "protein_xref_biomuta", "O15417", "" ], [ "Q96RU7-1", "protein_xref_biomuta", "Q96RU7", "" ], [ "Q96RU3-1", "protein_xref_biomuta", "Q96RU3", "" ], [ "Q96RU2-1", "protein_xref_biomuta", "Q96RU2", "" ], [ "Q96RU8-1", "protein_xref_biomuta", "Q96RU8", "" ], [ "Q6ZRV3-1", "protein_xref_biomuta", "Q6ZRV3", "" ], [ "Q6ZRV2-1", "protein_xref_biomuta", "Q6ZRV2", "" ], [ "P16520-1", "protein_xref_biomuta", "P16520", "" ], [ "Q8NCJ5-1", "protein_xref_biomuta", "Q8NCJ5", "" ], [ "Q9Y296-1", "protein_xref_biomuta", "Q9Y296", "" ], [ "Q9Y297-1", "protein_xref_biomuta", "Q9Y297", "" ], [ "Q9Y294-1", "protein_xref_biomuta", "Q9Y294", "" ], [ "Q9Y295-1", "protein_xref_biomuta", "Q9Y295", "" ], [ "Q6ICB4-1", "protein_xref_biomuta", "Q6ICB4", "" ], [ "Q6ICB0-1", "protein_xref_biomuta", "Q6ICB0", "" ], [ "P17693-1", "protein_xref_biomuta", "P17693", "" ], [ "O00507-1", "protein_xref_biomuta", "O00507", "" ], [ "O00505-1", "protein_xref_biomuta", "O00505", "" ], [ "O00501-1", "protein_xref_biomuta", "O00501", "" ], [ "Q8IYD2-1", "protein_xref_biomuta", "Q8IYD2", "" ], [ "Q8IYD1-1", "protein_xref_biomuta", "Q8IYD1", "" ], [ "Q8IYD9-1", "protein_xref_biomuta", "Q8IYD9", "" ], [ "Q8IYD8-1", "protein_xref_biomuta", "Q8IYD8", "" ], [ "Q8IVD9-1", "protein_xref_biomuta", "Q8IVD9", "" ], [ "P24903-1", "protein_xref_biomuta", "P24903", "" ], [ "Q8N7C0-1", "protein_xref_biomuta", "Q8N7C0", "" ], [ "Q9NV23-1", "protein_xref_biomuta", "Q9NV23", "" ], [ "Q9NV29-1", "protein_xref_biomuta", "Q9NV29", "" ], [ "Q2M238-1", "protein_xref_biomuta", "Q2M238", "" ], [ "Q9UQ26-6", "protein_xref_biomuta", "Q9UQ26", "" ], [ "P0C7I6-2", "protein_xref_biomuta", "P0C7I6", "" ], [ "P0C7I0-1", "protein_xref_biomuta", "P0C7I0", "" ], [ "Q5HYW2-1", "protein_xref_biomuta", "Q5HYW2", "" ], [ "Q5HYW3-1", "protein_xref_biomuta", "Q5HYW3", "" ], [ "Q9Y5J9-1", "protein_xref_biomuta", "Q9Y5J9", "" ], [ "P45984-1", "protein_xref_biomuta", "P45984", "" ], [ "Q7Z5G4-1", "protein_xref_biomuta", "Q7Z5G4", "" ], [ "Q9Y5J6-1", "protein_xref_biomuta", "Q9Y5J6", "" ], [ "P27469-1", "protein_xref_biomuta", "P27469", "" ], [ "Q9UEF7-1", "protein_xref_biomuta", "Q9UEF7", "" ], [ "Q9H239-1", "protein_xref_biomuta", "Q9H239", "" ], [ "Q9H237-1", "protein_xref_biomuta", "Q9H237", "" ], [ "Q8NEQ5-1", "protein_xref_biomuta", "Q8NEQ5", "" ], [ "Q8NEQ6-1", "protein_xref_biomuta", "Q8NEQ6", "" ], [ "Q8N9X3-1", "protein_xref_biomuta", "Q8N9X3", "" ], [ "Q8N9X5-1", "protein_xref_biomuta", "Q8N9X5", "" ], [ "A8MVJ9-1", "protein_xref_biomuta", "A8MVJ9", "" ], [ "Q9H7J1-1", "protein_xref_biomuta", "Q9H7J1", "" ], [ "O60830-1", "protein_xref_biomuta", "O60830", "" ], [ "O60831-1", "protein_xref_biomuta", "O60831", "" ], [ "O60832-1", "protein_xref_biomuta", "O60832", "" ], [ "O14579-1", "protein_xref_biomuta", "O14579", "" ], [ "Q7LDG7-1", "protein_xref_biomuta", "Q7LDG7", "" ], [ "P17900-1", "protein_xref_biomuta", "P17900", "" ], [ "Q9NPI9-1", "protein_xref_biomuta", "Q9NPI9", "" ], [ "Q9NPI8-1", "protein_xref_biomuta", "Q9NPI8", "" ], [ "Q9NPI5-1", "protein_xref_biomuta", "Q9NPI5", "" ], [ "Q9NPI7-1", "protein_xref_biomuta", "Q9NPI7", "" ], [ "Q9NPI6-1", "protein_xref_biomuta", "Q9NPI6", "" ], [ "Q9NPI1-1", "protein_xref_biomuta", "Q9NPI1", "" ], [ "Q9NPI0-1", "protein_xref_biomuta", "Q9NPI0", "" ], [ "Q05397-1", "protein_xref_biomuta", "Q05397", "" ], [ "Q96LT9-1", "protein_xref_biomuta", "Q96LT9", "" ], [ "Q96LT6-1", "protein_xref_biomuta", "Q96LT6", "" ], [ "Q96LT7-1", "protein_xref_biomuta", "Q96LT7", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref BioMuta\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-03-15T11:44:11.813164\n\nModified on\n - 2020-04-10T11:32:04.779812\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniprotKB Xref BioMuta contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to BioMuta database accessions/identifiers. BioMuta is a single-nucleotide variation (SNV) and disease association database where variations are mapped to genomes and RefSeq nucleotide entries, and unified through UniProtKB/Swiss-Prot positional coordinates. The current version of BioMuta contains only nonsynonymous single-nucleotide variations (nsSNVs) associated with cancer. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - mutation\n - BioMuta\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to BioMuta database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_biomuta.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_biomuta.csv\n Name: human_protein_xref_biomuta.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_biomuta.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_xref_biomuta.csv" }