{ "bcoid": "GLY_000087", "title": "Human Protein Recommended Names (UniProtKB)", "description": "The Human Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for human ...", "filename": "human_protein_recnames.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Recommended Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "Pyruvate kin..." ], [ "Q96J66-1...", "ATP-binding ..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "P30613-1", "Pyruvate kinase PKLR", "", "2.7.1.40" ], [ "Q96J66-1", "ATP-binding cassette sub-family C member 11", "", "7.6.2.2" ], [ "Q96J66-1", "ATP-binding cassette sub-family C member 11", "", "7.6.2.3" ], [ "Q96J65-1", "ATP-binding cassette sub-family C member 12", "", "" ], [ "P40424-1", "Pre-B-cell leukemia transcription factor 1", "", "" ], [ "P40425-1", "Pre-B-cell leukemia transcription factor 2", "", "" ], [ "P40426-1", "Pre-B-cell leukemia transcription factor 3", "", "" ], [ "P40429-1", "60S ribosomal protein L13a", "", "" ], [ "Q9H2I8-1", "Leucine-rich melanocyte differentiation-associated protein", "", "" ], [ "H0YL14-1", "Transmembrane protein 250", "", "" ], [ "Q5VVP1-1", "Spermatogenesis-associated protein 31A6", "", "" ], [ "Q8N865-1", "Uncharacterized protein C7orf31", "", "" ], [ "A6NIR3-1", "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5", "AGAP-5", "" ], [ "Q86VY4-1", "Testis-specific Y-encoded-like protein 5", "TSPY-like protein 5", "" ], [ "Q86VY9-1", "Transmembrane protein 200A", "", "" ], [ "Q9Y5S9-1", "RNA-binding protein 8A", "", "" ], [ "P19075-1", "Tetraspanin-8", "Tspan-8", "" ], [ "Q99519-1", "Sialidase-1", "", "3.2.1.18" ], [ "O15417-1", "Trinucleotide repeat-containing gene 18 protein", "", "" ], [ "Q96RU7-1", "Tribbles homolog 3", "TRB-3", "" ], [ "Q96RU3-1", "Formin-binding protein 1", "", "" ], [ "Q96RU2-1", "Ubiquitin carboxyl-terminal hydrolase 28", "", "3.4.19.12" ], [ "Q96RU8-1", "Tribbles homolog 1", "TRB-1", "" ], [ "Q6ZRV3-1", "Putative uncharacterized protein encoded by LINC00696", "", "" ], [ "Q6ZRV2-1", "Protein FAM83H", "", "" ], [ "P16520-1", "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "", "" ], [ "Q8NCJ5-1", "SPRY domain-containing protein 3", "", "" ], [ "Q9Y296-1", "Trafficking protein particle complex subunit 4", "", "" ], [ "Q9Y297-1", "F-box/WD repeat-containing protein 1A", "", "" ], [ "Q9Y294-1", "Histone chaperone ASF1A", "", "" ], [ "Q9Y295-1", "Developmentally-regulated GTP-binding protein 1", "DRG-1", "" ], [ "Q6ICB4-1", "Sesquipedalian-2", "Ses2", "" ], [ "Q6ICB0-1", "Desumoylating isopeptidase 1", "DeSI-1", "3.4.-.-" ], [ "P17693-1", "HLA class I histocompatibility antigen, alpha chain G", "", "" ], [ "O00507-1", "Probable ubiquitin carboxyl-terminal hydrolase FAF-Y", "", "3.4.19.12" ], [ "O00505-1", "Importin subunit alpha-4", "", "" ], [ "O00501-1", "Claudin-5", "", "" ], [ "Q8IYD2-1", "Kelch domain-containing protein 8A", "", "" ], [ "Q8IYD1-1", "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "Eukaryotic peptide chain release factor subunit 3b", "" ], [ "Q8IYD1-1", "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "eRF3b", "" ], [ "Q8IYD9-1", "Lung adenoma susceptibility protein 2", "", "" ], [ "Q8IYD8-1", "Fanconi anemia group M protein", "Protein FACM", "3.6.4.13" ], [ "Q8IVD9-1", "NudC domain-containing protein 3", "", "" ], [ "P24903-1", "Cytochrome P450 2F1", "", "1.14.14.1" ], [ "Q8N7C0-1", "Leucine-rich repeat-containing protein 52", "", "" ], [ "Q9NV23-1", "S-acyl fatty acid synthase thioesterase, medium chain", "", "3.1.2.14" ], [ "Q9NV29-1", "Transmembrane protein 100", "", "" ], [ "Q2M238-1", "Putative RRN3-like protein RRN3P1", "", "" ], [ "Q9UQ26-6", "Regulating synaptic membrane exocytosis protein 2", "", "" ], [ "P0C7I6-2", "Coiled-coil domain-containing protein 159", "", "" ], [ "P0C7I0-1", "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 8", "", "" ], [ "Q5HYW2-1", "NHS-like protein 2", "", "" ], [ "Q5HYW3-1", "Retrotransposon Gag-like protein 5", "", "" ], [ "Q9Y5J9-1", "Mitochondrial import inner membrane translocase subunit Tim8 B", "", "" ], [ "P45984-1", "Mitogen-activated protein kinase 9", "MAP kinase 9", "2.7.11.24" ], [ "P45984-1", "Mitogen-activated protein kinase 9", "MAPK 9", "2.7.11.24" ], [ "Q7Z5G4-1", "Golgin subfamily A member 7", "", "" ], [ "Q9Y5J6-1", "Mitochondrial import inner membrane translocase subunit Tim10 B", "", "" ], [ "P27469-1", "G0/G1 switch protein 2", "", "" ], [ "Q9UEF7-1", "Klotho", "", "3.2.1.31" ], [ "Q9H239-1", "Matrix metalloproteinase-28", "MMP-28", "3.4.24.-" ], [ "Q9H237-1", "Protein-serine O-palmitoleoyltransferase porcupine", "", "2.3.1.250" ], [ "Q8NEQ5-1", "Transmembrane protein C1orf162", "", "" ], [ "Q8NEQ6-1", "Steroid receptor-associated and regulated protein", "", "" ], [ "Q8N9X3-1", "Putative uncharacterized protein encoded by LINC01356", "", "" ], [ "Q8N9X5-1", "Putative protein encoded by LINC02912", "", "" ], [ "A8MVJ9-1", "Putative histone PARylation factor 1-like", "", "" ], [ "Q9H7J1-1", "Protein phosphatase 1 regulatory subunit 3E", "", "" ], [ "O60830-1", "Mitochondrial import inner membrane translocase subunit Tim17-B", "", "" ], [ "O60831-1", "PRA1 family protein 2", "", "" ], [ "O60832-1", "H/ACA ribonucleoprotein complex subunit DKC1", "", "5.4.99.-" ], [ "O14579-1", "Coatomer subunit epsilon", "", "" ], [ "Q7LDG7-1", "RAS guanyl-releasing protein 2", "", "" ], [ "P17900-1", "Ganglioside GM2 activator", "", "" ], [ "Q9NPI9-1", "Inward rectifier potassium channel 16", "", "" ], [ "Q9NPI8-1", "Fanconi anemia group F protein", "Protein FACF", "" ], [ "Q9NPI5-1", "Nicotinamide riboside kinase 2", "NRK 2", "2.7.1.22" ], [ "Q9NPI5-1", "Nicotinamide riboside kinase 2", "NmR-K 2", "2.7.1.22" ], [ "Q9NPI7-1", "Lysine-rich coiled-coil protein 1", "", "" ], [ "Q9NPI6-1", "mRNA-decapping enzyme 1A", "", "3.6.1.62" ], [ "Q9NPI1-1", "Bromodomain-containing protein 7", "", "" ], [ "Q9NPI0-1", "Transmembrane protein 138", "", "" ], [ "Q05397-1", "Focal adhesion kinase 1", "FADK 1", "2.7.10.2" ], [ "Q96LT9-1", "RNA-binding region-containing protein 3", "", "" ] ] }, "readme": "Name\n - Human Protein Recommended Names (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-01-23T17:21:05.956673\n\nModified on\n - 2020-04-10T11:30:02.137726\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for human [taxid:9606] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org//ln2downloads/ebi/2021_03/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org//ln2data/releases/data/v-1.11.2/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_recnames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_recnames.csv\n Name: human_protein_recnames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.12.1/reviewed/human_protein_recnames.stat.csv", "downloadurl": "/ln2data/releases/data/v-1.12.1/reviewed/human_protein_recnames.csv" }