pushed to tst/reported ====================== 1|GLYG-XXXX|referenced glycans/proteins in publication detail should be distinct 1|GLYG-1686|API changes for filter options on site list page 1|GLYG-1680|API changes to Searching by glycosylation subtypes on protein search 1|GLYG-1679|API changes to add number of proteins to motif list 1|GLYG-1684|API changes to add additional columns to site list page 1|GLYG-1687|API changes to home init to support video of the month 1|GLYG-XXXX|glycan duplicates -- https://api.tst.glygen.org/publication/detail?query={%22id%22:%2230745240%22,%22type%22:%22PubMed%22} 1|GLYG-XXXX|supersearch is showing zeros --run 1|GLYG-1691|Disease Site Frequency 1|GLYG-1692|Simple Search Issue 1|GLYG-1674|Spec Changes to support advanced composition search 1|GLYG-1689|Api changes related to score column in expression tissue table 1|GLYG-1685|Improve hit score new_score = 50*100*(10000-score) / 10000 1|GLYG-XXXX|list site filter list of amino acids 1|GLYG-XXXX|super search expose pmid 1|GLYG-XXXX|Remove new addional residue entries for glycan_init services 1|GLYG-XXXX|Change composition string on glycan detail 1|GLYG-XXXX|fully_defined scoring for site and protein based on best scoring glycan 1|GLYG-XXXX|add leaf in the subsumption and filter-in only tree related predicates need data patching ================== not done ======== 0|GLYG-1678|API changes to add glycan structure dictionary to motifs 0|GLYG-1683|API changes to Add Links to iCn3D tool from protein and site details 0|GLYG-1676|API changes to provide "has pathway" in glycan detail based on Sandbox data 0|GLYG-1638|API changes for multi concept supersearch 1|GLYG-XXX|For the glycan definition score part (site, protein). If there is no glycan the weight should be 0 as with the other score parts 0|GLYG-XXX|modify site listdb to have annotation counts so that scoring is done based on those frequencies 1|GLYG-XXX|Protein search init: Glycosylation O-linked subtypes should all start with capital letter after “-“ 1|GLYG-XXX|Site list init for filters: All O-linked subtypes (except O-linked itself) should start with capital letter after “-“. Same for “C-mannosylation” 1|GLYG-XXX|score for glycan list should be 2 decimal places 1|GLYG-XXX|change video api test example to https://www.youtube.com/embed/xyV5v5nRm6A?rel=0