{ "bcoid": "GLY_000608", "title": "Mouse Proteoform Phosphorylation Citations (UniProtKB)", "description": "", "filename": "mouse_proteoform_citations_phosphorylation_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Phosphorylation Citations UniProtKB", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q03267-1...", "A common mec..." ], [ "P47811-1...", "Enzymatic ac..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q03267-1", "A common mechanism for mitotic inactivation of C2H2 zinc finger DNA-binding domains.", "Genes & development", "2002 Dec 1", "Dovat S, Ronni T, Russell D, Ferrini R, Cobb BS, Smale ST", "protein_xref_pubmed", "12464629", "protein_xref_uniprotkb", "Q03267" ], [ "P47811-1", "Enzymatic activity and substrate specificity of mitogen-activated protein kinase p38alpha in different phosphorylation states.", "The Journal of biological chemistry", "2008 Sep 26", "Zhang YY, Mei ZQ, Wu JW, Wang ZX", "protein_xref_pubmed", "18669639", "protein_xref_uniprotkb", "P47811" ], [ "P47811-1", "Large-scale phosphorylation analysis of mouse liver.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 Jan 30", "Villen J, Beausoleil SA, Gerber SA, Gygi SP", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "P47811" ], [ "P47811-1", "Quantitative time-resolved phosphoproteomic analysis of mast cell signaling.", "Journal of immunology (Baltimore, Md. : 1950)", "2007 Nov 1", "Cao L, Yu K, Banh C, Nguyen V, Ritz A, Raphael BJ, Kawakami Y, Kawakami T, Salomon AR", "protein_xref_pubmed", "17947660", "protein_xref_uniprotkb", "P47811" ], [ "P47811-1", "Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain.", "Journal of proteome research", "2008 Jan", "Ballif BA, Carey GR, Sunyaev SR, Gygi SP", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "P47811" ], [ "P47811-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P47811" ], [ "Q9CW03-1", "Phosphoproteome analysis of mouse liver using immobilized metal affinity purification and linear ion trap mass spectrometry.", "Rapid communications in mass spectrometry : RCM", "2004", "Jin WH, Dai J, Zhou H, Xia QC, Zou HF, Zeng R", "protein_xref_pubmed", "15378723", "protein_xref_uniprotkb", "Q9CW03" ], [ "Q04863-1", "Signal-specific and phosphorylation-dependent RelB degradation: a potential mechanism of NF-kappaB control.", "Oncogene", "2001 Dec 6", "Marienfeld R, Berberich-Siebelt F, Berberich I, Denk A, Serfling E, Neumann M", "protein_xref_pubmed", "11781828", "protein_xref_uniprotkb", "Q04863" ], [ "O35625-1", "A GSK3beta phosphorylation site in axin modulates interaction with beta-catenin and Tcf-mediated gene expression.", "Biochemical and biophysical research communications", "1999 Dec 9", "Jho Eh, Lomvardas S, Costantini F", "protein_xref_pubmed", "10581160", "protein_xref_uniprotkb", "O35625" ], [ "P39688-1", "Differential effects of expression of the CD45 tyrosine protein phosphatase on the tyrosine phosphorylation of the lck, fyn, and c-src tyrosine protein kinases.", "Molecular and cellular biology", "1993 Mar", "Hurley TR, Hyman R, Sefton BM", "protein_xref_pubmed", "8441403", "protein_xref_uniprotkb", "P39688" ], [ "P39688-1", "Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain.", "Journal of proteome research", "2008 Jan", "Ballif BA, Carey GR, Sunyaev SR, Gygi SP", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "P39688" ], [ "Q505F1-1", "Retinoic acid-stimulated sequential phosphorylation, PML recruitment, and SUMOylation of nuclear receptor TR2 to suppress Oct4 expression.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 12", "Gupta P, Ho PC, Huq MM, Ha SG, Park SW, Khan AA, Tsai NP, Wei LN", "protein_xref_pubmed", "18682553", "protein_xref_uniprotkb", "Q505F1" ], [ "Q8R361-1", "Rab11 and its effector Rip11 participate in regulation of insulin granule exocytosis.", "Genes to cells : devoted to molecular & cellular mechanisms", "2009 Apr", "Sugawara K, Shibasaki T, Mizoguchi A, Saito T, Seino S", "protein_xref_pubmed", "19335615", "protein_xref_uniprotkb", "Q8R361" ], [ "P35922-1", "Phosphorylation influences the translation state of FMRP-associated polyribosomes.", "Human molecular genetics", "2003 Dec 15", "Ceman S, O'Donnell WT, Reed M, Patton S, Pohl J, Warren ST", "protein_xref_pubmed", "14570712", "protein_xref_uniprotkb", "P35922" ], [ "Q505F1-1", "Ligand-independent orphan receptor TR2 activation by phosphorylation at the DNA-binding domain.", "Proteomics", "2006 Jan", "Khan SA, Park SW, Huq MD, Wei LN", "protein_xref_pubmed", "16317770", "protein_xref_uniprotkb", "Q505F1" ], [ "Q9CW03-1", "Phosphorylation of chromosome core components may serve as axis marks for the status of chromosomal events during mammalian meiosis.", "PLoS genetics", "2012 Feb", "Fukuda T, Pratto F, Schimenti JC, Turner JM, Camerini-Otero RD, Hoog C", "protein_xref_pubmed", "22346761", "protein_xref_uniprotkb", "Q9CW03" ], [ "Q8C0V1-1", "MAJIN Links Telomeric DNA to the Nuclear Membrane by Exchanging Telomere Cap.", "Cell", "2015 Nov 19", "Shibuya H, Hernandez-Hernandez A, Morimoto A, Negishi L, Hoog C, Watanabe Y", "protein_xref_pubmed", "26548954", "protein_xref_uniprotkb", "Q8C0V1" ], [ "Q8C0V1-1", "The TRF1-binding protein TERB1 promotes chromosome movement and telomere rigidity in meiosis.", "Nature cell biology", "2014 Feb", "Shibuya H, Ishiguro K, Watanabe Y", "protein_xref_pubmed", "24413433", "protein_xref_uniprotkb", "Q8C0V1" ], [ "P25918-1", "Phosphoproteome analysis of mouse liver using immobilized metal affinity purification and linear ion trap mass spectrometry.", "Rapid communications in mass spectrometry : RCM", "2004", "Jin WH, Dai J, Zhou H, Xia QC, Zou HF, Zeng R", "protein_xref_pubmed", "15378723", "protein_xref_uniprotkb", "P25918" ], [ "Q9D2Z1-1", "Protein tyrosine phosphatase SAP-1 protects against colitis through regulation of CEACAM20 in the intestinal epithelium.", "Proceedings of the National Academy of Sciences of the United States of America", "2015 Aug 4", "Murata Y, Kotani T, Supriatna Y, Kitamura Y, Imada S, Kawahara K, Nishio M, Daniwijaya EW, Sadakata H, Kusakari S, Mori M, Kanazawa Y, Saito Y, Okawa K, Takeda-Morishita M, Okazawa H, Ohnishi H, Azuma T, Suzuki A, Matozaki T", "protein_xref_pubmed", "26195794", "protein_xref_uniprotkb", "Q9D2Z1" ], [ "Q3UP24-1", "Phosphorylation of NLRC4 is critical for inflammasome activation.", "Nature", "2012 Oct 25", "Qu Y, Misaghi S, Izrael-Tomasevic A, Newton K, Gilmour LL, Lamkanfi M, Louie S, Kayagaki N, Liu J, Komuves L, Cupp JE, Arnott D, Monack D, Dixit VM", "protein_xref_pubmed", "22885697", "protein_xref_uniprotkb", "Q3UP24" ], [ "Q3UP24-1", "Crystal structure of NLRC4 reveals its autoinhibition mechanism.", "Science (New York, N.Y.)", "2013 Jul 12", "Hu Z, Yan C, Liu P, Huang Z, Ma R, Zhang C, Wang R, Zhang Y, Martinon F, Miao D, Deng H, Wang J, Chang J, Chai J", "protein_xref_pubmed", "23765277", "protein_xref_uniprotkb", "Q3UP24" ], [ "P60840-1", "ARPP-16/ARPP-19: a highly conserved family of cAMP-regulated phosphoproteins.", "Journal of neurochemistry", "2001 Apr", "Dulubova I, Horiuchi A, Snyder GL, Girault JA, Czernik AJ, Shao L, Ramabhadran R, Greengard P, Nairn AC", "protein_xref_pubmed", "11279279", "protein_xref_uniprotkb", "P60840" ], [ "Q60749-1", "A target for Src in mitosis.", "Nature", "1994 Apr 28", "Fumagalli S, Totty NF, Hsuan JJ, Courtneidge SA", "protein_xref_pubmed", "7512695", "protein_xref_uniprotkb", "Q60749" ], [ "P13864-1", "Peptide mapping of the murine DNA methyltransferase reveals a major phosphorylation site and the start of translation.", "The Journal of biological chemistry", "1997 Jul 11", "Glickman JF, Pavlovich JG, Reich NO", "protein_xref_pubmed", "9211941", "protein_xref_uniprotkb", "P13864" ], [ "P13864-1", "Phosphorylation of serine-515 activates the Mammalian maintenance methyltransferase Dnmt1.", "Epigenetics", "2007 Sep", "Goyal R, Rathert P, Laser H, Gowher H, Jeltsch A", "protein_xref_pubmed", "17965600", "protein_xref_uniprotkb", "P13864" ], [ "Q9QVP9-1", "Different modes and qualities of tyrosine phosphorylation of Fak and Pyk2 during epithelial-mesenchymal transdifferentiation and cell migration: analysis of specific phosphorylation events using site-directed antibodies.", "Oncogene", "2001 May 10", "Nakamura K, Yano H, Schaefer E, Sabe H", "protein_xref_pubmed", "11420674", "protein_xref_uniprotkb", "Q9QVP9" ], [ "Q9QVP9-1", "Hypophosphorylated and inactive Pyk2 associates with paxillin at the microtubule organizing center in hematopoietic cells.", "Cellular signalling", "2011 Apr", "St-Pierre J, Lysechko TL, Ostergaard HL", "protein_xref_pubmed", "21195757", "protein_xref_uniprotkb", "Q9QVP9" ], [ "P01901-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", 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protein, a monoubiquitinated FANCD2 paralog required for DNA repair.", "Cell", "2007 Apr 20", "Smogorzewska A, Matsuoka S, Vinciguerra P, McDonald ER 3rd, Hurov KE, Luo J, Ballif BA, Gygi SP, Hofmann K, D'Andrea AD, Elledge SJ", "protein_xref_pubmed", "17412408", "protein_xref_uniprotkb", "Q8K368" ], [ "Q8CHQ0-1", "Mutations in Fbx4 inhibit dimerization of the SCF(Fbx4) ligase and contribute to cyclin D1 overexpression in human cancer.", "Cancer cell", "2008 Jul 8", "Barbash O, Zamfirova P, Lin DI, Chen X, Yang K, Nakagawa H, Lu F, Rustgi AK, Diehl JA", "protein_xref_pubmed", "18598945", "protein_xref_uniprotkb", "Q8CHQ0" ], [ "Q7TMA4-1", "Distinct Phosphorylation Clusters Determine the Signaling Outcome of Free Fatty Acid Receptor 4/G Protein-Coupled Receptor 120.", "Molecular pharmacology", "2016 May", "Prihandoko R, Alvarez-Curto E, Hudson BD, Butcher AJ, Ulven T, Miller AM, Tobin AB, Milligan G", "protein_xref_pubmed", "26873857", "protein_xref_uniprotkb", "Q7TMA4" ], [ "O54967-1", "Constitutive activated Cdc42-associated kinase (Ack) phosphorylation at arrested endocytic clathrin-coated pits of cells that lack dynamin.", "Molecular biology of the cell", "2011 Feb 15", "Shen H, Ferguson SM, Dephoure N, Park R, Yang Y, Volpicelli-Daley L, Gygi S, Schlessinger J, De Camilli P", "protein_xref_pubmed", "21169560", "protein_xref_uniprotkb", "O54967" ], [ "Q80W65-1", "PCSK9 is phosphorylated by a Golgi casein kinase-like kinase ex vivo and circulates as a phosphoprotein in humans.", "The FEBS journal", "2008 Jul", "Dewpura T, Raymond A, Hamelin J, Seidah NG, Mbikay M, Chretien M, Mayne J", "protein_xref_pubmed", "18498363", "protein_xref_uniprotkb", "Q80W65" ], [ "P62715-1", "Tyrosine phosphorylation of protein phosphatase 2A in response to growth stimulation and v-src transformation of fibroblasts.", "The Journal of biological chemistry", "1994 Mar 18", "Chen J, Parsons S, Brautigan DL", "protein_xref_pubmed", "7510677", "protein_xref_uniprotkb", "P62715" ], [ "Q62418-1", "SH3P7 is a cytoskeleton adapter protein and is coupled to signal transduction from lymphocyte antigen receptors.", "Molecular and cellular biology", "1999 Feb", "Larbolette O, Wollscheid B, Schweikert J, Nielsen PJ, Wienands J", "protein_xref_pubmed", "9891087", "protein_xref_uniprotkb", "Q62418" ], [ "Q62418-1", "Src-mediated phosphorylation of mammalian Abp1 (DBNL) regulates podosome rosette formation in transformed fibroblasts.", "Journal of cell science", "2012 Mar 1", "Boateng LR, Cortesio CL, Huttenlocher A", "protein_xref_pubmed", "22303001", "protein_xref_uniprotkb", "Q62418" ], [ "P27573-1", "Myelin P0 glycoprotein: identification of the site phosphorylated in vitro and in vivo by endogenous protein kinases.", "Journal of neurochemistry", "1995 Feb", "Hilmi S, Fournier M, Valeins H, Gandar JC, Bonnet J", "protein_xref_pubmed", "7530295", "protein_xref_uniprotkb", "P27573" ], [ "P01101-1", "Phosphorylation of the carboxyl-terminal transactivation domain of c-Fos by extracellular signal-regulated kinase mediates the transcriptional activation of AP-1 and cellular transformation induced by platelet-derived growth factor.", "Molecular and cellular biology", "2003 Oct", "Monje P, Marinissen MJ, Gutkind JS", "protein_xref_pubmed", "12972619", "protein_xref_uniprotkb", "P01101" ], [ "Q8K4J6-1", "Phosphorylation acts positively and negatively to regulate MRTF-A subcellular localisation and activity.", "eLife", "2016 Jun 15", "Panayiotou R, Miralles F, Pawlowski R, Diring J, Flynn HR, Skehel M, Treisman R", "protein_xref_pubmed", "27304076", "protein_xref_uniprotkb", "Q8K4J6" ], [ "O88487-1", "Inositol hexakisphosphate kinase 1 (IP6K1) activity is required for cytoplasmic dynein-driven transport.", "The Biochemical journal", "2016 Oct 1", "Chanduri M, Rai A, Malla AB, Wu M, Fiedler D, Mallik R, Bhandari R", "protein_xref_pubmed", "27474409", "protein_xref_uniprotkb", "O88487" ], [ "O70469-1", "Recruitment of Dok-R to the EGF receptor through its PTB domain is required for attenuation of Erk MAP kinase activation.", "Current biology : CB", "1999 Sep 23", "Jones N, Dumont DJ", "protein_xref_pubmed", "10508618", "protein_xref_uniprotkb", "O70469" ], [ "O88809-1", "Multisite phosphorylation of doublecortin by cyclin-dependent kinase 5.", "The Biochemical journal", "2004 Jul 15", "Graham ME, Ruma-Haynes P, Capes-Davis AG, Dunn JM, Tan TC, Valova VA, Robinson PJ, Jeffrey PL", "protein_xref_pubmed", "15099191", "protein_xref_uniprotkb", "O88809" ], [ "O88809-1", "Comparative phosphoproteomic analysis of neonatal and adult murine brain.", "Proteomics", "2012 Jul", "Goswami T, Li X, Smith AM, Luderowski EM, Vincent JJ, Rush J, Ballif BA", "protein_xref_pubmed", "22807455", "protein_xref_uniprotkb", "O88809" ], [ "Q9WVG6-1", "Biochemical control of CARM1 enzymatic activity by phosphorylation.", "The Journal of biological chemistry", "2009 Dec 25", "Feng Q, He B, Jung SY, Song Y, Qin J, Tsai SY, Tsai MJ, O'Malley BW", "protein_xref_pubmed", 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dynamically regulated by fasting and obesity in mice.", "The Journal of biological chemistry", "2009 Mar 13", "Gropler MC, Harris TE, Hall AM, Wolins NE, Gross RW, Han X, Chen Z, Finck BN", "protein_xref_pubmed", "19136718", "protein_xref_uniprotkb", "Q99PI5" ], [ "Q61666-1", "HIRA, the human homologue of yeast Hir1p and Hir2p, is a novel cyclin-cdk2 substrate whose expression blocks S-phase progression.", "Molecular and cellular biology", "2001 Mar", "Hall C, Nelson DM, Ye X, Baker K, DeCaprio JA, Seeholzer S, Lipinski M, Adams PD", "protein_xref_pubmed", "11238922", "protein_xref_uniprotkb", "Q61666" ], [ "P48356-1", "Identification of the Y985 and Y1077 motifs as SOCS3 recruitment sites in the murine leptin receptor.", "FEBS letters", "2000 Dec 1", "Eyckerman S, Broekaert D, Verhee A, Vandekerckhove J, Tavernier J", "protein_xref_pubmed", "11108838", "protein_xref_uniprotkb", "P48356" ], [ "Q70KY4-1", "FoxO6, a novel member of the FoxO class of transcription factors with distinct shuttling dynamics.", "The Journal of biological chemistry", "2003 Sep 19", "Jacobs FM, van der Heide LP, Wijchers PJ, Burbach JP, Hoekman MF, Smidt MP", "protein_xref_pubmed", "12857750", "protein_xref_uniprotkb", "Q70KY4" ], [ "Q8BMC3-1", "ShcB and ShcC activation by the Trk family of receptor tyrosine kinases.", "The Journal of biological chemistry", "2002 Jul 19", "Liu HY, Meakin SO", "protein_xref_pubmed", "12006576", "protein_xref_uniprotkb", "Q8BMC3" ], [ "Q9JKV2-1", "Activation of a nuclear Cdc2-related kinase within a mitogen-activated protein kinase-like TDY motif by autophosphorylation and cyclin-dependent protein kinase-activating kinase.", "Molecular and cellular biology", "2005 Jul", "Fu Z, Schroeder MJ, Shabanowitz J, Kaldis P, Togawa K, Rustgi AK, Hunt DF, Sturgill TW", "protein_xref_pubmed", "15988018", "protein_xref_uniprotkb", "Q9JKV2" ], [ "Q99N57-1", "Regulation of Raf-1 by direct feedback phosphorylation.", "Molecular cell", "2005 Jan 21", "Dougherty MK, Muller J, Ritt DA, Zhou M, Zhou XZ, Copeland TD, Conrads TP, Veenstra TD, Lu KP, Morrison DK", "protein_xref_pubmed", "15664191", "protein_xref_uniprotkb", "Q99N57" ], [ "A2RT67-1", "Regulation of DENND3, the exchange factor for the small GTPase Rab12 through an intramolecular interaction.", "The Journal of biological chemistry", "2017 Apr 28", "Xu J, McPherson PS", "protein_xref_pubmed", "28249939", "protein_xref_uniprotkb", "A2RT67" ], [ "Q60751-1", "Serine phosphorylation of the insulin-like growth factor I (IGF-1) receptor C-terminal tail restrains kinase activity and cell growth.", "The Journal of biological chemistry", "2012 Aug 10", "Kelly GM, Buckley DA, Kiely PA, Adams DR, O'Connor R", "protein_xref_pubmed", "22685298", "protein_xref_uniprotkb", "Q60751" ], [ "Q9JLM8-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9JLM8" ], [ "Q9JL99-1", "A novel Syk-dependent mechanism of platelet activation by the C-type lectin receptor CLEC-2.", "Blood", "2006 Jan 15", "Suzuki-Inoue K, Fuller GL, Garcia A, Eble JA, Pohlmann S, Inoue O, Gartner TK, Hughan SC, Pearce AC, Laing GD, Theakston RD, Schweighoffer E, Zitzmann N, Morita T, Tybulewicz VL, Ozaki Y, Watson SP", "protein_xref_pubmed", "16174766", "protein_xref_uniprotkb", "Q9JL99" ], [ "Q64368-1", "Phosphoproteome analysis of mouse liver using immobilized metal affinity purification and linear ion trap mass spectrometry.", "Rapid communications in mass spectrometry : RCM", "2004", "Jin WH, Dai J, Zhou H, Xia QC, Zou HF, Zeng R", "protein_xref_pubmed", "15378723", "protein_xref_uniprotkb", "Q64368" ], [ "Q923J1-1", "Identification of the phosphorylation sites on intact TRPM7 channels from mammalian cells.", "Biochemical and biophysical research communications", "2012 Jan 20", "Kim TY, Shin SK, Song MY, Lee JE, Park KS", "protein_xref_pubmed", "22222377", "protein_xref_uniprotkb", "Q923J1" ], [ "Q99LG4-1", "The p53 cofactor Strap exhibits an unexpected TPR motif and oligonucleotide-binding (OB)-fold structure.", "Proceedings of the National Academy of Sciences of the United States of America", "2012 Mar 6", "Adams CJ, Pike AC, Maniam S, Sharpe TD, Coutts AS, Knapp S, La Thangue NB, Bullock AN", "protein_xref_pubmed", "22362889", "protein_xref_uniprotkb", "Q99LG4" ], [ "Q62219-1", "Tyrosine-phosphorylated Hic-5 inhibits epidermal growth factor-induced lamellipodia formation.", "Experimental cell research", "2005 Nov 15", "Hetey SE, Lalonde DP, Turner CE", "protein_xref_pubmed", "16183059", "protein_xref_uniprotkb", "Q62219" ], [ "P06537-1", "Identification of phosphorylated sites in the mouse glucocorticoid receptor.", "The Journal of biological chemistry", "1991 Apr 25", "Bodwell JE, Orti E, Coull JM, Pappin DJ, Smith LI, Swift F", "protein_xref_pubmed", "2019585", "protein_xref_uniprotkb", "P06537" ], [ "Q99MS8-1", "Tubulin polyglutamylase enzymes are members of the TTL domain protein family.", "Science (New York, N.Y.)", "2005 Jun 17", "Janke C, Rogowski K, Wloga D, Regnard C, Kajava AV, Strub JM, Temurak N, van Dijk J, Boucher D, van Dorsselaer A, Suryavanshi S, Gaertig J, Edde B", "protein_xref_pubmed", "15890843", "protein_xref_uniprotkb", "Q99MS8" ], [ "Q91YJ5-1", "Phosphoproteome analysis of mouse liver using immobilized metal affinity purification and linear ion trap mass spectrometry.", "Rapid communications in mass spectrometry : RCM", "2004", "Jin WH, Dai J, Zhou H, Xia QC, Zou HF, Zeng R", "protein_xref_pubmed", "15378723", "protein_xref_uniprotkb", "Q91YJ5" ], [ "O54943-1", "Mapping of phosphorylation sites by a multi-protease approach with specific phosphopeptide enrichment and NanoLC-MS/MS analysis.", "Analytical chemistry", "2005 Aug 15", "Schlosser A, Vanselow JT, Kramer A", "protein_xref_pubmed", "16097765", "protein_xref_uniprotkb", "O54943" ], [ "Q80U63-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q80U63" ], [ "O55135-1", "Uncoupling of GTP hydrolysis from eIF6 release on the ribosome causes Shwachman-Diamond syndrome.", "Genes & development", "2011 May 1", "Finch AJ, Hilcenko C, Basse N, Drynan LF, Goyenechea B, Menne TF, Gonzalez Fernandez A, Simpson P, D'Santos CS, Arends MJ, Donadieu J, Bellanne-Chantelot C, Costanzo M, Boone C, McKenzie AN, Freund SM, Warren AJ", "protein_xref_pubmed", "21536732", "protein_xref_uniprotkb", "O55135" ], [ "P63330-1", "Tyrosine phosphorylation of protein phosphatase 2A in response to growth stimulation and v-src transformation of fibroblasts.", "The Journal of biological chemistry", "1994 Mar 18", "Chen J, Parsons S, Brautigan 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The data we provide for each amino acid substitution is a score and a qualitative prediction (either 'tolerated' or 'deleterious'). The score is the normalized probability that the amino acid change is tolerated so scores nearer zero are more likely to be deleterious. The qualitative prediction is derived from this score such that substitutions with a score < 0.05 are called 'deleterious' and all others are called 'tolerated\"\n Unique Values: \"10\"\n Name: \"alt_motif\"\n Description: \"Altered motif\"\n Unique Values: \"24\"\n Name: \"disease_xrefs\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"polyphen_score\"\n Description: \"The score assigned to a amino acid substitution by a tool called as PolyPhen (=Polymorphism Phenotyping) which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations. The PolyPhen score ranges from 0.0 (tolerated) to 1.0 (deleterious). Variants with scores of 0.0 are predicted to be benign. Values closer to 1.0 are more confidently predicted to be deleterious\"\n Unique Values: \"1\"\n Name: \"polyphen_prediction\"\n Description: \"\"The PolyPhen prediction values are - greater than 0.908 - \"\"Probably Damaging\"\"; greater than 0.446 and less than or equal to 0.908 - \"\"Possibly Damaging\"\"; less than or equal to 0.446 - \"\"Benign\"\"\"\n Unique Values: \"1\"\n Name: \"is_known_glycoprotein\"\n Description: \"Yes or no flag to denote if a protein is experimentally proven glycoprotein\"\n Unique Values: \"1\"\n Name: \"alt_nt\"\n Description: \"Alternative nucleotide\"\n Unique Values: \"1\"\n Name: \"protein_name\"\n Description: \"Protein name in the UniProtKB\"\n Unique Values: \"16\"\n Name: \"disease_evidence_ECO:0000313\"\n Description: \"The evidence that could be a PMID or a ClinVar ID that associates disease with the variant\"\n Unique Values: \"1\"\n Name: \"effect\"\n Description: \"The effect on glycosylation or N-sequon due to variation at site of glycosylated amino acid.\"\n Unique Values: \"3\"\n Name: \"end_aa_pos\"\n Description: \"End position of the amino acid in the sequence of a protein in UniProtKB\"\n Unique Values: \"18\"\n Name: \"mutation_type\"\n Description: \"Denotes whether mutation was reported with reference to amino acid or nucleotide\"\n Unique Values: \"1\"\n Name: \"disease_description\"\n Description: \"The disease description and/or definition \"\n Unique Values: \"1\"\n Name: \"do_id\"\n Description: \"Disease Ontology identifier\"\n Unique Values: \"1\"\n Name: \"evidence_ECO:0000269\"\n Description: \"A type of experimental evidence that is used in a manual assertion. Usually the values are PMIDs\"\n Unique Values: \"1\"\n Name: \"ref_nt\"\n Description: \"Reference nucleotide\"\n Unique Values: \"4\"\n Name: \"disease\"\n Description: \"The disease name for the cell line\"\n Unique Values: \"1\"\n Name: \"alt_aa\"\n Description: \"Altered amino acid residue\"\n Unique Values: \"10\"\n Name: \"cosmic_id\"\n Description: \"Legacy mutation identifier (COSM) in Catalogue of Somatic Mutations in Cancer (COSMIC) represents existing COSM mutation identifiers. This identifier remains the same between different assemblies (GRCh37 and GRCh38). All the COSM ids at the same genomic location have been collapsed into one representative COSM id. These ids are maintained to help track existing mutations\"\n Unique Values: \"1\"\n Name: \"ref_motif\"\n Description: \"Reference motif\"\n Unique Values: \"20\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"minor_allelic_frequency\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"gene_name\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene name/symbol are approved by the HUGO Gene Nomenclature Committee (HGNC) and mouse gene name are approved by the Mouse Genome Informatics (MGI)\"\n Unique Values: \"17\"\n Name: \"disease_evidence_ECO:0000269\"\n Description: \"The PMID evidence for the association of the disease with the variant.\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.11.2/reviewed/mouse_proteoform_citations_phosphorylation_uniprotkb.csv" }