{ "bcoid": "GLY_000603", "title": "Glycan Pathway Reactome", "description": "-", "filename": "glycan_pathway_reactome.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Pathway Reactome", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G71142DF...", "beta-D-gluco..." ], [ "G71142DF...", "beta-D-gluco..." ] ], "headers": [ "glytoucan_ac...", "compound_nam..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "compound_name" }, { "type": "string", "label": "reactome_pathway_id" }, { "type": "string", "label": "pathway_name" }, { "type": "string", "label": "species_scientific_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" } ], [ "G71142DF", "beta-D-glucose [endoplasmic reticulum lumen]", "R-HSA-9683686", "Maturation of spike protein", "Homo sapiens", "glycan_xref_reactome", "R-ALL-9683087" ], [ "G71142DF", "beta-D-glucose [endoplasmic reticulum lumen]", "R-HSA-9694548", "Maturation of spike protein", "Homo sapiens", "glycan_xref_reactome", "R-ALL-9683087" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-CEL-2024096", "HS-GAG degradation", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-CFA-2024096", "HS-GAG degradation", "Canis familiaris", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-DDI-2024096", "HS-GAG degradation", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-DME-2024096", "HS-GAG degradation", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-DRE-2024096", "HS-GAG degradation", "Danio rerio", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-GGA-2024096", "HS-GAG degradation", "Gallus gallus", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-HSA-2024096", "HS-GAG degradation", "Homo sapiens", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-MMU-2024096", "HS-GAG degradation", "Mus musculus", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-RNO-2024096", "HS-GAG degradation", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-SSC-2024096", "HS-GAG degradation", "Sus scrofa", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-BTA-1660662", "Glycosphingolipid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-BTA-1660662", "Glycosphingolipid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-BTA-4085001", "Sialic acid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-BTA-4085001", "Sialic acid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-BTA-428643", "Organic anion transporters", "Bos taurus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-BTA-428643", "Organic anion transporters", "Bos taurus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-BTA-975577", "N-Glycan antennae elongation", "Bos taurus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-CEL-4085001", "Sialic acid metabolism", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-CEL-4085001", "Sialic acid metabolism", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-CEL-428643", "Organic anion transporters", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-CEL-428643", "Organic anion transporters", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-CFA-1660662", "Glycosphingolipid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-CFA-1660662", "Glycosphingolipid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-CFA-4085001", "Sialic acid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-CFA-4085001", "Sialic acid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-CFA-4085001", "Sialic acid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-CFA-428643", "Organic anion transporters", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-CFA-428643", "Organic anion transporters", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-CFA-975577", "N-Glycan antennae elongation", "Canis familiaris", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DDI-4085001", "Sialic acid metabolism", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DDI-4085001", "Sialic acid metabolism", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DDI-428643", "Organic anion transporters", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DDI-428643", "Organic anion transporters", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DME-4085001", "Sialic acid metabolism", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DME-4085001", "Sialic acid metabolism", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DME-428643", "Organic anion transporters", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DME-428643", "Organic anion transporters", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-DME-975577", "N-Glycan antennae elongation", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DRE-1660662", "Glycosphingolipid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DRE-1660662", "Glycosphingolipid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DRE-4085001", "Sialic acid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DRE-4085001", "Sialic acid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-DRE-4085001", "Sialic acid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DRE-428643", "Organic anion transporters", "Danio rerio", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DRE-428643", "Organic anion transporters", "Danio rerio", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-DRE-975577", "N-Glycan antennae elongation", "Danio rerio", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-GGA-1660662", "Glycosphingolipid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-GGA-1660662", "Glycosphingolipid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-GGA-4085001", "Sialic acid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-GGA-4085001", "Sialic acid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-GGA-4085001", "Sialic acid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-GGA-428643", "Organic anion transporters", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-GGA-428643", "Organic anion transporters", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-GGA-975577", "N-Glycan antennae elongation", "Gallus gallus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-HSA-1660662", "Glycosphingolipid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-HSA-1660662", "Glycosphingolipid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-HSA-4085001", "Sialic acid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-HSA-4085001", "Sialic acid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-HSA-4085001", "Sialic acid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-HSA-428643", "Organic anion transporters", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-HSA-428643", "Organic anion transporters", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-HSA-5619035", "Defective SLC17A5 causes Salla disease (SD) and ISSD", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-HSA-975577", "N-Glycan antennae elongation", "Homo sapiens", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-MMU-1660662", "Glycosphingolipid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-MMU-1660662", "Glycosphingolipid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-MMU-4085001", "Sialic acid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-MMU-4085001", "Sialic acid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-MMU-4085001", "Sialic acid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-MMU-428643", "Organic anion transporters", "Mus musculus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-MMU-428643", "Organic anion transporters", "Mus musculus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-MMU-975577", "N-Glycan antennae elongation", "Mus musculus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-RNO-1660662", "Glycosphingolipid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-RNO-1660662", "Glycosphingolipid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-RNO-4085001", "Sialic acid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-RNO-4085001", "Sialic acid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-RNO-4085001", "Sialic acid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-RNO-428643", "Organic anion transporters", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-RNO-428643", "Organic anion transporters", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-RNO-975577", "N-Glycan antennae elongation", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-SSC-1660662", "Glycosphingolipid metabolism", "Sus scrofa", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-SSC-1660662", "Glycosphingolipid metabolism", "Sus scrofa", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-SSC-4085001", "Sialic acid metabolism", "Sus scrofa", "glycan_xref_reactome", "R-ALL-428633" ] ] }, "readme": "Name\n - Glycan Pathway Reactome\n\nVersion\n - 1.11.2\n\nCreated on\n - 2021-10-15T07:09:29.335203\n\nModified on\n - \n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - -\n\nDescription Domain\n Keywords\n - Glycan\n - Pathway\n - Reactome\n\n Pipeline Steps\n - Step-1: \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: \n URI: \n Output Subdomain\n Name: glycan_pathway_reactome.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.11.2/reviewed/glycan_pathway_reactome.csv\n Name: glycan_pathway_reactome.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.11.2/reviewed/glycan_pathway_reactome.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"16\"\n Name: \"motif_start\"\n Description: \"\"\n Unique Values: \"23\"\n Name: \"filter_flags\"\n Description: \"Filter tags/flags assigned to the mutation entries that have passed the mutation filter criteria\"\n Unique Values: \"19\"\n Name: \"sift_prediction\"\n Description: \"The SIFT qualitative prediction is derived from this score such that substitutions with a score < 0.05 are called 'deleterious' and all others are called 'tolerated\"\n Unique Values: \"3\"\n Name: \"somatic_status\"\n Description: \"The status of the variant whether it is germline (somatic status =0) or somatic (somatic status =1) variant\"\n Unique Values: \"1\"\n Name: \"chr_pos\"\n Description: \"Chromosome Position of a gene\"\n Unique Values: \"19\"\n Name: \"chr_id\"\n Description: \"\"\n Unique Values: \"10\"\n Name: \"dbsnp_id\"\n Description: \"\"A reference SNP ID number\"\n Unique Values: \"19\"\n Name: \"evidence_ECO:0000313\"\n Description: \"A type of evidence that is imported information used in an automatic assertion\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"19\"\n Name: \"mim_id\"\n Description: \"Disease ID from the OMIM database\"\n Unique Values: \"1\"\n Name: \"description\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"begin_aa_pos\"\n Description: \"Start position of the amino acid in the sequence of a protein in UniProtKB\"\n Unique Values: \"18\"\n Name: \"cytogenic_band\"\n Description: \"One of the subregions of a chromosome visible microscopically after special staining\"\n Unique Values: \"14\"\n Name: \"aa_pos\"\n Description: \"Position of the amino acid in canonical sequence of protein in the UniProtKB database\"\n Unique Values: \"18\"\n Name: \"ref_aa\"\n Description: \"Reference amino acid residue\"\n Unique Values: \"9\"\n Name: \"sift_score\"\n Description: \"SIFT predicts whether an amino acid substitution is likely to affect protein function based on sequence homology and the physico-chemical similarity between the alternate amino acids. The data we provide for each amino acid substitution is a score and a qualitative prediction (either 'tolerated' or 'deleterious'). The score is the normalized probability that the amino acid change is tolerated so scores nearer zero are more likely to be deleterious. The qualitative prediction is derived from this score such that substitutions with a score < 0.05 are called 'deleterious' and all others are called 'tolerated\"\n Unique Values: \"10\"\n Name: \"alt_motif\"\n Description: \"Altered motif\"\n Unique Values: \"24\"\n Name: \"disease_xrefs\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"polyphen_score\"\n Description: \"The score assigned to a amino acid substitution by a tool called as PolyPhen (=Polymorphism Phenotyping) which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations. The PolyPhen score ranges from 0.0 (tolerated) to 1.0 (deleterious). Variants with scores of 0.0 are predicted to be benign. Values closer to 1.0 are more confidently predicted to be deleterious\"\n Unique Values: \"1\"\n Name: \"polyphen_prediction\"\n Description: \"\"The PolyPhen prediction values are - greater than 0.908 - \"\"Probably Damaging\"\"; greater than 0.446 and less than or equal to 0.908 - \"\"Possibly Damaging\"\"; less than or equal to 0.446 - \"\"Benign\"\"\"\n Unique Values: \"1\"\n Name: \"is_known_glycoprotein\"\n Description: \"Yes or no flag to denote if a protein is experimentally proven glycoprotein\"\n Unique Values: \"1\"\n Name: \"alt_nt\"\n Description: \"Alternative nucleotide\"\n Unique Values: \"1\"\n Name: \"protein_name\"\n Description: \"Protein name in the UniProtKB\"\n Unique Values: \"16\"\n Name: \"disease_evidence_ECO:0000313\"\n Description: \"The evidence that could be a PMID or a ClinVar ID that associates disease with the variant\"\n Unique Values: \"1\"\n Name: \"effect\"\n Description: \"The effect on glycosylation or N-sequon due to variation at site of glycosylated amino acid.\"\n Unique Values: \"3\"\n Name: \"end_aa_pos\"\n Description: \"End position of the amino acid in the sequence of a protein in UniProtKB\"\n Unique Values: \"18\"\n Name: \"mutation_type\"\n Description: \"Denotes whether mutation was reported with reference to amino acid or nucleotide\"\n Unique Values: \"1\"\n Name: \"disease_description\"\n Description: \"The disease description and/or definition \"\n Unique Values: \"1\"\n Name: \"do_id\"\n Description: \"Disease Ontology identifier\"\n Unique Values: \"1\"\n Name: \"evidence_ECO:0000269\"\n Description: \"A type of experimental evidence that is used in a manual assertion. Usually the values are PMIDs\"\n Unique Values: \"1\"\n Name: \"ref_nt\"\n Description: \"Reference nucleotide\"\n Unique Values: \"4\"\n Name: \"disease\"\n Description: \"The disease name for the cell line\"\n Unique Values: \"1\"\n Name: \"alt_aa\"\n Description: \"Altered amino acid residue\"\n Unique Values: \"10\"\n Name: \"cosmic_id\"\n Description: \"Legacy mutation identifier (COSM) in Catalogue of Somatic Mutations in Cancer (COSMIC) represents existing COSM mutation identifiers. This identifier remains the same between different assemblies (GRCh37 and GRCh38). All the COSM ids at the same genomic location have been collapsed into one representative COSM id. These ids are maintained to help track existing mutations\"\n Unique Values: \"1\"\n Name: \"ref_motif\"\n Description: \"Reference motif\"\n Unique Values: \"20\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"minor_allelic_frequency\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"gene_name\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene name/symbol are approved by the HUGO Gene Nomenclature Committee (HGNC) and mouse gene name are approved by the Mouse Genome Informatics (MGI)\"\n Unique Values: \"17\"\n Name: \"disease_evidence_ECO:0000269\"\n Description: \"The PMID evidence for the association of the disease with the variant.\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.11.2/reviewed/glycan_pathway_reactome.csv" }