{
    "object_id": "https://biocomputeobject.org/GLY_000489/v-1.11.2",
    "spec_version": "1.3.0",
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "SARS coronavirus (SARS-CoV-1)",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "diseases",
                        "category_name": "tags"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "SARS-CoV1 Protein Diseases",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Rahi Navelkar",
                "email": "rsn13@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Amanda Bell",
                "email": "amandab2140@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jonathon Keeney",
                "email": "keeneyjg@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Millicent Quartey",
                "email": "mquartey@email.gwu.edu"
            }
        ],
        "created": "2020-04-29T16:15:30.138920",
        "modified": "2020-04-29T21:49:33.078025",
        "version": "v-1.11.2"
    },
    "description_domain": {
        "keywords": [
            "SARS (Severe Acute Respiratory Syndrome) ",
            "DOID",
            "SARS-CoV-1",
            "disease"
        ],
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py",
                "step_number": 1,
                "version": "",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.11.2/compiled/sarscov1_protein_disease.csv",
                        "filename": "sarscov1_protein_disease.csv"
                    }
                ],
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.11.2/reviewed/sarscov1_protein_disease.csv",
                        "filename": "sarscov1_protein_disease.csv"
                    }
                ],
                "prerequisite": [],
                "description": "The script extracts the UniProtKB canonical accessions, database name, database ID and DOID from the input file as a dataset in a csv format"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "usability_domain": [
        "The SARS coronavirus (SARS-CoV-1) Protein Diseases dataset contains disease caused by sarscov1 virus [taxid:694009] which is SARS and is mapped to all UniProtKB canonical accessions. The dataset contains SARS (Severe Acute Respiratory Syndrome) disease ontology ID and GlyGen dataset ID. The input file for this dataset is compiled by GlyGen. If you use this dataset please give proper attribution to UniProtKB and GlyGen."
    ],
    "etag": "54e32f41e802ad1811d11662dbcfb703",
    "_id": {
        "$oid": "5ea9e062f5c47b0f2b01bcb0"
    },
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org//ln2data/releases/data/v-1.11.2/compiled/sarscov1_protein_disease.csv",
                    "filename": "sarscov1_protein_disease.csv"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.11.2/reviewed/sarscov1_protein_disease_glygen.csv",
                    "filename": "sarscov1_protein_disease_glygen.csv"
                }
            },
            {
                "mediatype": "",
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.11.2/reviewed/sarscov1_protein_disease.stat.csv",
                    "filename": "sarscov1_protein_disease.stat.csv"
                }
            }
        ]
    }
}