{ "bcoid": "GLY_000553", "title": "Human Xref The O-GlcNAc Database", "description": "Human Xref The O-GlcNAc Database contains human (taxid:9606) UniProtKB canonical accessions mapped to ...", "filename": "human_protein_xref_oglcnac_db.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "The O-GlcNAc Database", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "P23919-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_oglcnac_db", "P30613", "O-GlcNAc MCW" ], [ "P23919-1", "protein_xref_oglcnac_db", "P23919", "O-GlcNAc MCW" ], [ "Q9C0H9-5", "protein_xref_oglcnac_db", "Q9C0H9", "O-GlcNAc MCW" ], [ "P40425-1", "protein_xref_oglcnac_db", "P40425", "O-GlcNAc MCW" ], [ "P40429-1", "protein_xref_oglcnac_db", "P40429", "O-GlcNAc MCW" ], [ "P03897-1", "protein_xref_oglcnac_db", "P03897", "O-GlcNAc MCW" ], [ "P02768-1", "protein_xref_oglcnac_db", "P02768", "O-GlcNAc MCW" ], [ "P02765-1", "protein_xref_oglcnac_db", "P02765", "O-GlcNAc MCW" ], [ "Q9P2J5-1", "protein_xref_oglcnac_db", "Q9P2J5", "O-GlcNAc MCW" ], [ "O43399-1", "protein_xref_oglcnac_db", "O43399", "O-GlcNAc MCW" ], [ "Q6NX49-1", "protein_xref_oglcnac_db", "Q6NX49", "O-GlcNAc MCW" ], [ "P09001-1", "protein_xref_oglcnac_db", "P09001", "O-GlcNAc MCW" ], [ "P53708-1", "protein_xref_oglcnac_db", "P53708", "O-GlcNAc MCW" ], [ "Q14568-1", "protein_xref_oglcnac_db", "Q14568", "O-GlcNAc MCW" ], [ "Q14563-1", "protein_xref_oglcnac_db", "Q14563", "O-GlcNAc MCW" ], [ "Q14562-1", "protein_xref_oglcnac_db", "Q14562", "O-GlcNAc MCW" ], [ "Q14566-1", "protein_xref_oglcnac_db", "Q14566", "O-GlcNAc MCW" ], [ "Q96BT7-1", "protein_xref_oglcnac_db", "Q96BT7", "O-GlcNAc MCW" ], [ "O15417-1", "protein_xref_oglcnac_db", "O15417", "O-GlcNAc MCW" ], [ "Q96RU7-1", "protein_xref_oglcnac_db", "Q96RU7", "O-GlcNAc MCW" ], [ "Q96RU2-1", "protein_xref_oglcnac_db", "Q96RU2", "O-GlcNAc MCW" ], [ "Q9ULV4-1", "protein_xref_oglcnac_db", "Q9ULV4", "O-GlcNAc MCW" ], [ "Q13643-1", "protein_xref_oglcnac_db", "Q13643", "O-GlcNAc MCW" ], [ "Q9Y5A9-1", "protein_xref_oglcnac_db", "Q9Y5A9", "O-GlcNAc MCW" ], [ "A8MZ59-2", "protein_xref_oglcnac_db", "A8MZ59", "O-GlcNAc MCW" ], [ "Q9Y3T6-1", "protein_xref_oglcnac_db", "Q9Y3T6", "O-GlcNAc MCW" ], [ "Q9Y297-1", "protein_xref_oglcnac_db", "Q9Y297", "O-GlcNAc MCW" ], [ "Q9Y294-1", "protein_xref_oglcnac_db", "Q9Y294", "O-GlcNAc MCW" ], [ "Q9Y295-1", "protein_xref_oglcnac_db", "Q9Y295", "O-GlcNAc MCW" ], [ "P61289-1", "protein_xref_oglcnac_db", "P61289", "O-GlcNAc MCW" ], [ "O75420-1", "protein_xref_oglcnac_db", "O75420", "O-GlcNAc MCW" ], [ "O75427-1", "protein_xref_oglcnac_db", "O75427", "O-GlcNAc MCW" ], [ "O00505-1", "protein_xref_oglcnac_db", "O00505", "O-GlcNAc MCW" ], [ "Q8N9C0-1", "protein_xref_oglcnac_db", "Q8N9C0", "O-GlcNAc MCW" ], [ "Q8IYD8-1", "protein_xref_oglcnac_db", "Q8IYD8", "O-GlcNAc MCW" ], [ "Q8IVD9-1", "protein_xref_oglcnac_db", "Q8IVD9", "O-GlcNAc MCW" ], [ "Q9UI08-1", "protein_xref_oglcnac_db", "Q9UI08", "O-GlcNAc MCW" ], [ "Q9UI09-1", "protein_xref_oglcnac_db", "Q9UI09", "O-GlcNAc MCW" ], [ "Q5VVM6-1", "protein_xref_oglcnac_db", "Q5VVM6", "O-GlcNAc MCW" ], [ "Q5M9N0-1", "protein_xref_oglcnac_db", "Q5M9N0", "O-GlcNAc MCW" ], [ "Q9UQ26-6", "protein_xref_oglcnac_db", "Q9UQ26", "O-GlcNAc MCW" ], [ "Q86UA1-1", "protein_xref_oglcnac_db", "Q86UA1", "O-GlcNAc MCW" ], [ "Q9Y6G9-1", "protein_xref_oglcnac_db", "Q9Y6G9", "O-GlcNAc MCW" ], [ "Q9Y6G5-1", "protein_xref_oglcnac_db", "Q9Y6G5", "O-GlcNAc MCW" ], [ "P41091-1", "protein_xref_oglcnac_db", "P41091", "O-GlcNAc MCW" ], [ "Q8WUI4-1", "protein_xref_oglcnac_db", "Q8WUI4", "O-GlcNAc MCW" ], [ "P61221-1", "protein_xref_oglcnac_db", "P61221", "O-GlcNAc MCW" ], [ "O60830-1", "protein_xref_oglcnac_db", "O60830", "O-GlcNAc MCW" ], [ "O60832-1", "protein_xref_oglcnac_db", "O60832", "O-GlcNAc MCW" ], [ "O14578-1", "protein_xref_oglcnac_db", "O14578", "O-GlcNAc MCW" ], [ "P43007-1", "protein_xref_oglcnac_db", "P43007", "O-GlcNAc MCW" ], [ "Q9NPI6-1", "protein_xref_oglcnac_db", "Q9NPI6", "O-GlcNAc MCW" ], [ "Q9NPI1-1", "protein_xref_oglcnac_db", "Q9NPI1", "O-GlcNAc MCW" ], [ "Q05397-1", "protein_xref_oglcnac_db", "Q05397", "O-GlcNAc MCW" ], [ "Q14247-1", "protein_xref_oglcnac_db", "Q14247", "O-GlcNAc MCW" ], [ "Q14241-1", "protein_xref_oglcnac_db", "Q14241", "O-GlcNAc MCW" ], [ "Q86VH2-1", "protein_xref_oglcnac_db", "Q86VH2", "O-GlcNAc MCW" ], [ "Q96LT9-1", "protein_xref_oglcnac_db", "Q96LT9", "O-GlcNAc MCW" ], [ "Q96LT6-1", "protein_xref_oglcnac_db", "Q96LT6", "O-GlcNAc MCW" ], [ "P62280-1", "protein_xref_oglcnac_db", "P62280", "O-GlcNAc MCW" ], [ "O95777-1", "protein_xref_oglcnac_db", "O95777", "O-GlcNAc MCW" ], [ "Q13564-1", "protein_xref_oglcnac_db", "Q13564", "O-GlcNAc MCW" ], [ "Q13561-1", "protein_xref_oglcnac_db", "Q13561", "O-GlcNAc MCW" ], [ "O00203-1", "protein_xref_oglcnac_db", "O00203", "O-GlcNAc MCW" ], [ "Q96C92-1", "protein_xref_oglcnac_db", "Q96C92", "O-GlcNAc MCW" ], [ "Q96AQ6-1", "protein_xref_oglcnac_db", "Q96AQ6", "O-GlcNAc MCW" ], [ "Q96NB3-1", "protein_xref_oglcnac_db", "Q96NB3", "O-GlcNAc MCW" ], [ "Q6P1M9-1", "protein_xref_oglcnac_db", "Q6P1M9", "O-GlcNAc MCW" ], [ "Q6P1M3-1", "protein_xref_oglcnac_db", "Q6P1M3", "O-GlcNAc MCW" ], [ "P57088-1", "protein_xref_oglcnac_db", "P57088", "O-GlcNAc MCW" ], [ "Q8WU79-1", "protein_xref_oglcnac_db", "Q8WU79", "O-GlcNAc MCW" ], [ "O43598-1", "protein_xref_oglcnac_db", "O43598", "O-GlcNAc MCW" ], [ "O43592-1", "protein_xref_oglcnac_db", "O43592", "O-GlcNAc MCW" ], [ "A5PLN9-1", "protein_xref_oglcnac_db", "A5PLN9", "O-GlcNAc MCW" ], [ "Q9BQC6-1", "protein_xref_oglcnac_db", "Q9BQC6", "O-GlcNAc MCW" ], [ "Q86X55-3", "protein_xref_oglcnac_db", "Q86X55", "O-GlcNAc MCW" ], [ "P40692-1", "protein_xref_oglcnac_db", "P40692", "O-GlcNAc MCW" ], [ "P33778-1", "protein_xref_oglcnac_db", "P33778", "O-GlcNAc MCW" ], [ "Q8IUI8-1", "protein_xref_oglcnac_db", "Q8IUI8", "O-GlcNAc MCW" ], [ "Q9UJF2-1", "protein_xref_oglcnac_db", "Q9UJF2", "O-GlcNAc MCW" ], [ "P01040-1", "protein_xref_oglcnac_db", "P01040", "O-GlcNAc MCW" ], [ "Q8IY57-1", "protein_xref_oglcnac_db", "Q8IY57", "O-GlcNAc MCW" ], [ "Q8IY51-1", "protein_xref_oglcnac_db", "Q8IY51", "O-GlcNAc MCW" ], [ "P42229-1", "protein_xref_oglcnac_db", "P42229", "O-GlcNAc MCW" ] ] }, "readme": "Name\n - Human Xref The O-GlcNAc Database\n\nVersion\n - 1.10.6\n\nCreated on\n - 2021-02-22T19:23:09.094102\n\nModified on\n - 2021-03-02T16:04:56.979980\n\nCreated by\n - [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu], Rex R. Berendt [rberendt@mcw.edu], Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n - \n\nUsability Domain\n - Human Xref The O-GlcNAc Database contains human (taxid:9606) UniProtKB canonical accessions mapped to the The O-GlcNAc Database accessions.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the The O-GlcNAc Database accessions.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Name: human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n Output Subdomain\n Name: human_protein_xref_oglcnac_db.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_oglcnac_db.csv\n Name: human_protein_xref_oglcnac_db.stat.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_oglcnac_db.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_xref_oglcnac_db.csv" }