{
    "bcoid": "GLY_000412",
    "title": "SARS-CoV2 Protein Isoform sequences (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Protein Isoform sequences (UniProtKB) dataset contains ...",
    "filename": "sarscov2_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "All Protein Sequences",
        "file_type": "fasta",
        "status": "Reviewed",
        "scope": "internal"
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>sp|P0DTD2-1|ORF9B_SARS2 Isoform 1 of ORF9b protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN= PE=1 SV=1 CANONICAL=P0DTD2-1\nMDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKT\nLNSLEDKAFQLTPIAVQMTKLATTEELPDEFVVVTVK\n\n\n>tr|A0A663DJA2-1|A0A663DJA2_SARS2 Isoform 1 of ORF10 protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=ORF10 PE=4 SV=1 CANONICAL=A0A663DJA2-1\nMGYINVFAFPFTIYSLLLCRMNSRNYIAQVDVVNFNLT\n\n\n>sp|P0DTG1-1|ORF3C_SARS2 Isoform 1 of ORF3c protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN= PE=4 SV=1 CANONICAL=P0DTG1-1\nMLLLQILFALLQRYRYKPHSLSDGLLLALHFLLFFRALPKS\n\n\n>sp|P0DTD3-1|ORF9C_SARS2 Isoform 1 of ORF9c protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN= PE=3 SV=1 CANONICAL=P0DTD3-1\nMLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM\nAVMLLLLCCCLTD\n\n\n>sp|P0DTC7-1|NS7A_SARS2 Isoform 1 of ORF7a protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN= PE=1 SV=1 CANONICAL=P0DTC7-1\nMKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFS\nTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKT\nE\n\n\n>sp|P0DTC6-1|NS6_SARS2 Isoform 1 of ORF6 protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN= PE=1 SV=1 CANONICAL=P0DTC6-1\nMFHLVDFQVTIAEILLIIMRTFKVSIWNLDYIINLIIKNLSKSLTENKYSQLDEEQPMEI\nD\n\n\n>sp|P0DTC5-1|VME1_SARS2 Isoform 1 of Membrane protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN= PE=1 SV=1 CANONICAL=P0DTC5-1\nMADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV\nTLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL\nNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK\nLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ\n\n\n>sp|P0DTC4-1|VEMP_SARS2 Isoform 1 of Envelope small membrane protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=E PE=1 SV=1 CANONICAL=P0DTC4-1\nMYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS\nRVKNLNSSRVPDLLV\n\n\n>sp|P0DTC3-1|AP3A_SARS2 Isoform 1 of ORF3a protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN= PE=1 SV=1 CANONICAL=P0DTC3-1\nMDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSAS\nKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINF\nVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPIS\nEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEP\nEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL\n\n\n</pre>"
    },
    "readme": "Name\n   - SARS-CoV2 Protein Isoform sequences (UniProtKB)\n\nVersion\n   - 1.10.6\n\nCreated on\n  - 2020-04-02T22:33:42.595609\n\nModified on\n   - 2020-04-29T18:24:30.587295\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Protein Isoform sequences (UniProtKB) dataset contains sarscov2 [taxid:2697049] protein fasta sequences for the sarscov2 isoform accessions from the UniProtKB database. The dataset is derived from 2020_01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all sarscov2 isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-sars-cov-2.nt\n   Output Subdomain\n      Name: sarscov2_protein_allsequences.fasta\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_allsequences.fasta\n      Name: sarscov2_protein_allsequences.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_allsequences.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"123404\"",
    "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/sarscov2_protein_allsequences.fasta"
}