{ "bcoid": "GLY_000407", "title": "Rat NCBI Protein Linkouts", "description": "The Rat NCBI Protein Linkouts contains rat [taxid:10116] NCBI RefSeq accessions with their corresponding ...", "filename": "rat_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "NCBI Linkouts", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "XP_006223048.1", "https://glygen.org/protein/D3ZB44", "", "", "", "" ], [ "10227", "Protein", "XP_006223048", "https://glygen.org/protein/D3ZB44", "", "", "", "" ], [ "10227", "Protein", "XP_001056612.2", "https://glygen.org/protein/D3ZB49", "", "", "", "" ], [ "10227", "Protein", "XP_001056612", "https://glygen.org/protein/D3ZB49", "", "", "", "" ], [ "10227", "Protein", "NP_001101416.1", "https://glygen.org/protein/D3ZB48", "", "", "", "" ], [ "10227", "Protein", "NP_001101416", "https://glygen.org/protein/D3ZB48", "", "", "", "" ], [ "10227", "Protein", "XP_006235834.1", "https://glygen.org/protein/Q5RJZ1", "", "", "", "" ], [ "10227", "Protein", "XP_006235834", "https://glygen.org/protein/Q5RJZ1", "", "", "", "" ], [ "10227", "Protein", "NP_001041507.1", "https://glygen.org/protein/Q0HA29", "", "", "", "" ], [ "10227", "Protein", "NP_001041507", "https://glygen.org/protein/Q0HA29", "", "", "", "" ], [ "10227", "Protein", "NP_001000969.1", "https://glygen.org/protein/A0A0G2JVG8", "", "", "", "" ], [ "10227", "Protein", "NP_001000969", "https://glygen.org/protein/A0A0G2JVG8", "", "", "", "" ], [ "10227", "Protein", "NP_036854.1", "https://glygen.org/protein/Q99372", "", "", "", "" ], [ "10227", "Protein", "NP_036854", "https://glygen.org/protein/Q99372", "", "", "", "" ], [ "10227", "Protein", "XP_006224017.1", "https://glygen.org/protein/A0A096MJY4", "", "", "", "" ], [ "10227", "Protein", "XP_006224017", "https://glygen.org/protein/A0A096MJY4", "", "", "", "" ], [ "10227", "Protein", "XP_001077762.3", "https://glygen.org/protein/A0A096MJY1", "", "", "", "" ], [ "10227", "Protein", "XP_001077762", "https://glygen.org/protein/A0A096MJY1", "", "", "", "" ], [ "10227", "Protein", "XP_006229432.1", "https://glygen.org/protein/A0A0G2KA92", "", "", "", "" ], [ "10227", "Protein", "XP_006229432", "https://glygen.org/protein/A0A0G2KA92", "", "", "", "" ], [ "10227", "Protein", "NP_001128103.1", "https://glygen.org/protein/A0A0G2K4P4", "", "", "", "" ], [ "10227", "Protein", "NP_001128103", "https://glygen.org/protein/A0A0G2K4P4", "", "", "", "" ], [ "10227", "Protein", "NP_001012131.1", "https://glygen.org/protein/Q5RJK6", "", "", "", "" ], [ "10227", "Protein", "NP_001012131", "https://glygen.org/protein/Q5RJK6", "", "", "", "" ], [ "10227", "Protein", "NP_036967.1", "https://glygen.org/protein/Q62949", "", "", "", "" ], [ "10227", "Protein", "NP_036967", "https://glygen.org/protein/Q62949", "", "", "", "" ], [ "10227", "Protein", "NP_001007723.1", "https://glygen.org/protein/P01946", "", "", "", "" ], [ "10227", "Protein", "NP_001007723", "https://glygen.org/protein/P01946", "", "", "", "" ], [ "10227", "Protein", "NP_001012154.1", "https://glygen.org/protein/Q5M9G9", "", "", "", "" ], [ "10227", "Protein", "NP_001012154", "https://glygen.org/protein/Q5M9G9", "", "", "", "" ], [ "10227", "Protein", "NP_062241.2", "https://glygen.org/protein/O35152", "", "", "", "" ], [ "10227", "Protein", "NP_062241", "https://glygen.org/protein/O35152", "", "", "", "" ], [ "10227", "Protein", "NP_598206.1", "https://glygen.org/protein/P30936", "", "", "", "" ], [ "10227", "Protein", "NP_598206", "https://glygen.org/protein/P30936", "", "", "", "" ], [ "10227", "Protein", "NP_059054.1", "https://glygen.org/protein/O35158", "", "", "", "" ], [ "10227", "Protein", "NP_059054", "https://glygen.org/protein/O35158", "", "", "", "" ], [ "10227", "Protein", "NP_671747.1", "https://glygen.org/protein/P02761", "", "", "", "" ], [ "10227", "Protein", "NP_671747", "https://glygen.org/protein/P02761", "", "", "", "" ], [ "10227", "Protein", "NP_445740.1", "https://glygen.org/protein/P02764", "", "", "", "" ], [ "10227", "Protein", "NP_445740", "https://glygen.org/protein/P02764", "", "", "", "" ], [ "10227", "Protein", "NP_036813.2", "https://glygen.org/protein/P02767", "", "", "", "" ], [ "10227", "Protein", "NP_036813", "https://glygen.org/protein/P02767", "", "", "", "" ], [ "10227", "Protein", "NP_001099679.1", "https://glygen.org/protein/D4A4W8", "", "", "", "" ], [ "10227", "Protein", "NP_001099679", "https://glygen.org/protein/D4A4W8", "", "", "", "" ], [ "10227", "Protein", "NP_001000252.1", "https://glygen.org/protein/D4A4W0", "", "", "", "" ], [ "10227", "Protein", "NP_001000252", "https://glygen.org/protein/D4A4W0", "", "", "", "" ], [ "10227", "Protein", "XP_017443583.1", "https://glygen.org/protein/D4A4W1", "", "", "", "" ], [ "10227", "Protein", "XP_017443583", "https://glygen.org/protein/D4A4W1", "", "", "", "" ], [ "10227", "Protein", "XP_006240610.1", "https://glygen.org/protein/F7EN52", "", "", "", "" ], [ "10227", "Protein", "XP_006240610", "https://glygen.org/protein/F7EN52", "", "", "", "" ], [ "10227", "Protein", "NP_001102458.1", "https://glygen.org/protein/D4A4W4", "", "", "", "" ], [ "10227", "Protein", "NP_001102458", "https://glygen.org/protein/D4A4W4", "", "", "", "" ], [ "10227", "Protein", "XP_008765859.2", "https://glygen.org/protein/D4A4W5", "", "", "", "" ], [ "10227", "Protein", "XP_008765859", "https://glygen.org/protein/D4A4W5", "", "", "", "" ], [ "10227", "Protein", "NP_001102977.1", "https://glygen.org/protein/D4A4W6", "", "", "", "" ], [ "10227", "Protein", "NP_001102977", "https://glygen.org/protein/D4A4W6", "", "", "", "" ], [ "10227", "Protein", "NP_001103026.1", "https://glygen.org/protein/D4A4W7", "", "", "", "" ], [ "10227", "Protein", "NP_001103026", "https://glygen.org/protein/D4A4W7", "", "", "", "" ], [ "10227", "Protein", "NP_001101765.1", "https://glygen.org/protein/G3V6I3", "", "", "", "" ], [ "10227", "Protein", "NP_001101765", "https://glygen.org/protein/G3V6I3", "", "", "", "" ], [ "10227", "Protein", "NP_570135.2", "https://glygen.org/protein/P21932", "", "", "", "" ], [ "10227", "Protein", "NP_570135", "https://glygen.org/protein/P21932", "", "", "", "" ], [ "10227", "Protein", "NP_001291542.1", "https://glygen.org/protein/Q8K4K5", "", "", "", "" ], [ "10227", "Protein", "NP_001291542", "https://glygen.org/protein/Q8K4K5", "", "", "", "" ], [ "10227", "Protein", "XP_006249914.1", "https://glygen.org/protein/G3V6I6", "", "", "", "" ], [ "10227", "Protein", "XP_006249914", "https://glygen.org/protein/G3V6I6", "", "", "", "" ], [ "10227", "Protein", "NP_001094281.1", "https://glygen.org/protein/G3V6I4", "", "", "", "" ], [ "10227", "Protein", "NP_001094281", "https://glygen.org/protein/G3V6I4", "", "", "", "" ], [ "10227", "Protein", "NP_001291463.1", "https://glygen.org/protein/P12749", "", "", "", "" ], [ "10227", "Protein", "NP_001291463", "https://glygen.org/protein/P12749", "", "", "", "" ], [ "10227", "Protein", "XP_006257121.1", "https://glygen.org/protein/O08812", "", "", "", "" ], [ "10227", "Protein", "XP_006257121", "https://glygen.org/protein/O08812", "", "", "", "" ], [ "10227", "Protein", "NP_058845.1", "https://glygen.org/protein/P39020", "", "", "", "" ], [ "10227", "Protein", "NP_058845", "https://glygen.org/protein/P39020", "", "", "", "" ], [ "10227", "Protein", "NP_001128321.1", "https://glygen.org/protein/A0A0G2K0T8", "", "", "", "" ], [ "10227", "Protein", "NP_001128321", "https://glygen.org/protein/A0A0G2K0T8", "", "", "", "" ], [ "10227", "Protein", "XP_006256483.1", "https://glygen.org/protein/Q6P6Q9", "", "", "", "" ], [ "10227", "Protein", "XP_006256483", "https://glygen.org/protein/Q6P6Q9", "", "", "", "" ], [ "10227", "Protein", "XP_008763246.1", "https://glygen.org/protein/P28648", "", "", "", "" ], [ "10227", "Protein", "XP_008763246", "https://glygen.org/protein/P28648", "", "", "", "" ], [ "10227", "Protein", "NP_001099870.1", "https://glygen.org/protein/D3ZVR6", "", "", "", "" ], [ "10227", "Protein", "NP_001099870", "https://glygen.org/protein/D3ZVR6", "", "", "", "" ], [ "10227", "Protein", "NP_036761.1", "https://glygen.org/protein/P01237", "", "", "", "" ], [ "10227", "Protein", "NP_036761", "https://glygen.org/protein/P01237", "", "", "", "" ] ] }, "readme": "Name\n - Rat NCBI Protein Linkouts\n\nVersion\n - 1.10.6\n\nCreated on\n - 2020-03-20T15:56:44.646296\n\nModified on\n - 2020-04-07T10:36:34.047702\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Rat NCBI Protein Linkouts contains rat [taxid:10116] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_ncbi_linkouts.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_ncbi_linkouts.csv\n Name: rat_protein_ncbi_linkouts.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/rat_protein_ncbi_linkouts.csv" }