{ "bcoid": "GLY_000395", "title": "Human Protein Submitted Names (UniProtKB)", "description": "The Human Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for human [taxid:9606] ...", "filename": "human_protein_submittednames.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Submitted Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O75818-1...", "Ribonuclease..." ], [ "Q14697-1...", "Neutral alph..." ] ], "headers": [ "uniprotkb_ca...", "submitted_na..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "submitted_name_full" }, { "type": "string", "label": "submitted_name_short" }, { "type": "string", "label": "ec_name" } ], [ "O75818-1", "Ribonuclease P protein subunit p40", "", "" ], [ "Q14697-1", "Neutral alpha-glucosidase AB", "", "" ], [ "Q9Y6K5-1", "2'-5'-oligoadenylate synthase 3", "", "" ], [ "P05093-1", "Steroid 17-alpha-hydroxylase/17,20 lyase", "", "" ], [ "Q8TEU7-1", "Rap guanine nucleotide exchange factor 6", "", "" ], [ "Q8TEU7-1", "cDNA FLJ53249, highly similar to Rap guanine nucleotide exchange factor 6", "", "" ], [ "P14136-1", "Glial fibrillary acidic protein", "", "" ], [ "P09471-1", "Guanine nucleotide-binding protein G(o) subunit alpha", "", "" ], [ "Q92994-1", "BRF1 protein", "", "" ], [ "Q92994-1", "Transcription factor IIIB 90 kDa subunit", "", "" ], [ "P23769-1", "Endothelial transcription factor GATA-2", "", "" ], [ "Q7RTN6-1", "STE20-related kinase adapter protein alpha", "", "" ], [ "Q92614-1", "Unconventional myosin-XVIIIa", "", "" ], [ "P10242-1", "Transcriptional activator Myb", "", "" ], [ "Q9GZW8-1", "Membrane-spanning 4-domains subfamily A member 7", "", "" ], [ "Q8N6H7-1", "ADP-ribosylation factor GTPase-activating protein 2", "", "" ], [ "P25705-1", "ATP synthase subunit alpha, mitochondrial", "", "" ], [ "Q6UW68-1", "Transmembrane protein 205", "", "" ], [ "Q9BUZ4-1", "TNF receptor-associated factor 4", "", "" ], [ "Q8NC06-1", "Acyl-CoA-binding domain-containing protein 4", "", "" ], [ "Q8NC06-1", "Acyl-CoA binding domain containing 4 isoform 4", "", "" ], [ "Q8NC06-1", "Acyl-Coenzyme A binding domain containing 4, isoform CRA_b", "", "" ], [ "Q8IYT4-1", "Katanin p60 ATPase-containing subunit A-like 2", "", "" ], [ "P10242-1", "Transcriptional activator Myb", "", "" ], [ "A6NC51-1", "Modulator of macroautophagy TMEM150B", "", "" ], [ "Q13829-1", "BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2", "", "" ], [ "Q8NBW4-1", "cDNA FLJ16675 fis, clone TKIDN2005956, weakly similar to Putative amino-acid permease F13H10.3", "", "" ], [ "Q8NBW4-1", "Sodium-coupled neutral amino acid transporter 9", "", "" ], [ "Q92538-1", "Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1", "", "" ], [ "P11310-1", "Medium-chain-specific acyl-CoA dehydrogenase, mitochondrial", "", "" ], [ "P35442-1", "Thrombospondin-2", "", "" ], [ "O14513-1", "Nck-associated protein 5", "", "" ], [ "Q15326-1", "Zinc finger MYND domain-containing protein 11", "", "" ], [ "Q9H079-1", "KATNB1-like protein 1", "", "" ], [ "O94916-1", "Nuclear factor of-activated T-cells 5", "", "" ], [ "Q9UGJ0-1", "5'-AMP-activated protein kinase subunit gamma-2", "", "" ], [ "P35749-1", "Myosin-11", "", "" ], [ "Q9Y228-1", "TRAF3-interacting JNK-activating modulator", "", "" ], [ "Q9NXE4-1", "Sphingomyelin phosphodiesterase 4", "", "" ], [ "Q9H6T0-1", "Epithelial-splicing regulatory protein 2", "", "" ], [ "O95208-1", "Epsin-2", "", "" ], [ "Q4G0P3-1", "Hydrocephalus-inducing protein homolog", "", "" ], [ "P43146-1", "Netrin receptor DCC", "", "" ], [ "Q86W25-1", "NACHT, LRR and PYD domains-containing protein 13", "", "" ], [ "Q9Y2T1-1", "Axin-2", "", "" ], [ "Q9BTE0-1", "N-acetyltransferase 9", "", "" ], [ "P49640-1", "Homeobox even-skipped homolog protein 1", "", "" ], [ "Q6E0U4-1", "Dermokine", "", "" ], [ "Q96Q35-1", "Flagellum-associated coiled-coil domain-containing protein 1", "", "" ], [ "Q9Y4J8-1", "Dystrobrevin alpha", "", "" ], [ "P49789-1", "Bis(5'-adenosyl)-triphosphatase", "", "" ], [ "P13804-1", "Electron transfer flavoprotein subunit alpha, mitochondrial", "", "" ], [ "Q5ZPR3-1", "CD276 antigen", "", "" ], [ "Q9BVP2-1", "Guanine nucleotide-binding protein-like 3", "", "" ], [ "Q9GZS3-1", "WD repeat-containing protein 61", "", "" ], [ "Q9UBX1-1", "Cathepsin F", "", "" ], [ "Q9HBL0-1", "Tensin-1", "", "" ], [ "P31749-1", "RAC-alpha serine/threonine-protein kinase", "", "" ], [ "Q9Y2H2-1", "Phosphatidylinositide phosphatase SAC2", "", "" ], [ "P36402-1", "Transcription factor 7", "", "" ], [ "P06744-1", "Glucose-6-phosphate isomerase", "", "" ], [ "Q96L93-1", "Kinesin-like protein KIF16B", "", "" ], [ "Q9Y2Q1-1", "Zinc finger protein 257", "", "" ], [ "P29353-1", "SHC-transforming protein 1", "", "" ], [ "Q86SE5-1", "RNA-binding Raly-like protein", "", "" ], [ "P00738-1", "Haptoglobin", "", "" ], [ "Q8WWY8-1", "Lipase member H", "", "" ], [ "Q8WWY8-1", "Mutant lipase H", "", "" ], [ "Q96BU1-1", "S100P-binding protein", "", "" ], [ "Q9UQB3-1", "Catenin delta-2", "", "" ], [ "P29122-1", "Proprotein convertase subtilisin/kexin type 6", "", "" ], [ "P19440-1", "Glutathione hydrolase 1 proenzyme", "", "" ], [ "Q9NR90-1", "Deleted in azoospermia protein 3", "", "" ], [ "Q8NCB2-1", "CaM kinase-like vesicle-associated protein", "", "" ], [ "Q9Y547-1", "Chromosome 1 open reading frame 41, isoform CRA_b", "", "" ], [ "Q9Y547-1", "Intraflagellar transport protein 25 homolog", "", "" ], [ "Q8N720-1", "Zinc finger protein 655", "", "" ], [ "Q96BT3-1", "Centromere protein T", "", "" ], [ "Q9Y653-1", "Adhesion G-protein-coupled receptor G1", "", "" ], [ "Q6P996-1", "Pyridoxal-dependent decarboxylase domain-containing protein 1", "", "" ], [ "Q99569-1", "Plakophilin-4", "", "" ], [ "Q8NEZ5-1", "F-box only protein 22", "", "" ], [ "P32004-1", "Neural cell adhesion molecule L1", "", "" ], [ "Q9NVL8-1", "Uncharacterized protein CCDC198", "", "" ] ] }, "readme": "Name\n - Human Protein Submitted Names (UniProtKB)\n\nVersion\n - 1.10.6\n\nCreated on\n - 2020-03-15T13:38:29.540245\n\nModified on\n - 2020-04-10T11:49:36.985464\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for human [taxid:9606] UniProtKB/TrEMBL proteins accessions. In UniProt, UniProtKB/TrEMBL entries usually have 'Submitted name' which may later be improved by automatic annotation procedures but if not, it remains as provided by the submitter until the entry is manually annotated and integrated to UniProtKB/Swiss-Prot. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein submitted name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB submitted names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_submittednames.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_submittednames.csv\n Name: human_protein_submittednames.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_submittednames.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_submittednames.csv" }