{
    "bcoid": "GLY_000394",
    "title": "Rat Protein Names (NCBI RefSeq)",
    "description": "The Rat Protein Names (NCBI RefSeq) dataset contains rat [taxid:10116] protein names (primary and other ...",
    "filename": "rat_protein_proteinnames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Protein",
        "tags": "Protein Names",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "D3ZB44-1...",
                "XP_006223048..."
            ],
            [
                "D3ZB44-1...",
                "XP_006223048..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                }
            ],
            [
                "D3ZB44-1",
                "XP_006223048.1",
                "zinc finger protein 324A"
            ],
            [
                "D3ZB44-1",
                "XP_006223048",
                "zinc finger protein 324A"
            ],
            [
                "D3ZB49-1",
                "XP_001056612.2",
                "oxidative stress-induced growth inhibitor 2 isoform X2"
            ],
            [
                "D3ZB49-1",
                "XP_001056612",
                "oxidative stress-induced growth inhibitor 2 isoform X2"
            ],
            [
                "D3ZB48-1",
                "NP_001101416.1",
                "protein Hook homolog 1"
            ],
            [
                "D3ZB48-1",
                "NP_001101416.1",
                "hook homolog 1"
            ],
            [
                "D3ZB48-1",
                "NP_001101416",
                "protein Hook homolog 1"
            ],
            [
                "D3ZB48-1",
                "NP_001101416",
                "hook homolog 1"
            ],
            [
                "Q5RJZ1-1",
                "XP_006235834.1",
                "regulator of telomere elongation helicase 1 isoform X1"
            ],
            [
                "Q5RJZ1-1",
                "XP_006235834",
                "regulator of telomere elongation helicase 1 isoform X1"
            ],
            [
                "Q0HA29-1",
                "NP_001041507.1",
                "nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2"
            ],
            [
                "Q0HA29-1",
                "NP_001041507.1",
                "nicotinamide mononucleotide adenylyltransferase 2; NMN adenylyltransferase 2; naMN adenylyltransferase 1; nicotinate-nucleotide adenylyltransferase 1; naMN adenylyltransferase 2; NMN/NaMN adenylyltransferase 2; nicotinate-nucleotide adenylyltransferase 2"
            ],
            [
                "Q0HA29-1",
                "NP_001041507",
                "nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2"
            ],
            [
                "Q0HA29-1",
                "NP_001041507",
                "nicotinamide mononucleotide adenylyltransferase 2; NMN adenylyltransferase 2; naMN adenylyltransferase 1; nicotinate-nucleotide adenylyltransferase 1; naMN adenylyltransferase 2; NMN/NaMN adenylyltransferase 2; nicotinate-nucleotide adenylyltransferase 2"
            ],
            [
                "A0A0G2JVG8-1",
                "NP_001000969.1",
                "olfactory receptor Olr410"
            ],
            [
                "A0A0G2JVG8-1",
                "NP_001000969.1",
                "olfactory receptor gene Olr410"
            ],
            [
                "A0A0G2JVG8-1",
                "NP_001000969",
                "olfactory receptor Olr410"
            ],
            [
                "A0A0G2JVG8-1",
                "NP_001000969",
                "olfactory receptor gene Olr410"
            ],
            [
                "Q99372-1",
                "NP_036854.1",
                "elastin precursor"
            ],
            [
                "Q99372-1",
                "NP_036854.1",
                "Tropoelastin"
            ],
            [
                "Q99372-1",
                "NP_036854",
                "elastin precursor"
            ],
            [
                "Q99372-1",
                "NP_036854",
                "Tropoelastin"
            ],
            [
                "A0A096MJY4-1",
                "XP_006224017.1",
                "myocyte-specific enhancer factor 2C isoform X1"
            ],
            [
                "A0A096MJY4-1",
                "XP_006224017",
                "myocyte-specific enhancer factor 2C isoform X1"
            ],
            [
                "A0A096MJY1-1",
                "XP_001077762.3",
                "glypican-6 isoform X2"
            ],
            [
                "A0A096MJY1-1",
                "XP_001077762",
                "glypican-6 isoform X2"
            ],
            [
                "A0A0G2KA92-1",
                "XP_006229432.1",
                "chromodomain-helicase-DNA-binding protein 2 isoform X2"
            ],
            [
                "A0A0G2KA92-1",
                "XP_006229432",
                "chromodomain-helicase-DNA-binding protein 2 isoform X2"
            ],
            [
                "A0A0G2K4P4-1",
                "NP_001128103.1",
                "basal body-orientation factor 1"
            ],
            [
                "A0A0G2K4P4-1",
                "NP_001128103.1",
                "coiled-coil domain containing 176"
            ],
            [
                "A0A0G2K4P4-1",
                "NP_001128103",
                "basal body-orientation factor 1"
            ],
            [
                "A0A0G2K4P4-1",
                "NP_001128103",
                "coiled-coil domain containing 176"
            ],
            [
                "Q5RJK6-1",
                "NP_001012131.1",
                "inositol polyphosphate 1-phosphatase"
            ],
            [
                "Q5RJK6-1",
                "NP_001012131",
                "inositol polyphosphate 1-phosphatase"
            ],
            [
                "Q62949-1",
                "NP_036967.1",
                "cortistatin preproprotein"
            ],
            [
                "Q62949-1",
                "NP_036967.1",
                "Preprocortistatin"
            ],
            [
                "Q62949-1",
                "NP_036967",
                "cortistatin preproprotein"
            ],
            [
                "Q62949-1",
                "NP_036967",
                "Preprocortistatin"
            ],
            [
                "P01946-1",
                "NP_001007723.1",
                "hemoglobin alpha, adult chain 2"
            ],
            [
                "P01946-1",
                "NP_001007723.1",
                "2-alpha-1 globin; 2-alpha globin; hemoglobin alpha 2 chain; globin c2; globin c3; Hemoglobin subunit alpha-1/2; Alpha-1/2-globin; Hemoglobin alpha-1/2 chain; hemoglobin, alpha 2"
            ],
            [
                "P01946-1",
                "NP_001007723",
                "hemoglobin alpha, adult chain 2"
            ],
            [
                "P01946-1",
                "NP_001007723",
                "2-alpha-1 globin; 2-alpha globin; hemoglobin alpha 2 chain; globin c2; globin c3; Hemoglobin subunit alpha-1/2; Alpha-1/2-globin; Hemoglobin alpha-1/2 chain; hemoglobin, alpha 2"
            ],
            [
                "Q5M9G9-1",
                "NP_001012154.1",
                "FAST kinase domain-containing protein 4"
            ],
            [
                "Q5M9G9-1",
                "NP_001012154.1",
                "protein TBRG4; transforming growth factor beta regulated gene 4"
            ],
            [
                "Q5M9G9-1",
                "NP_001012154",
                "FAST kinase domain-containing protein 4"
            ],
            [
                "Q5M9G9-1",
                "NP_001012154",
                "protein TBRG4; transforming growth factor beta regulated gene 4"
            ],
            [
                "O35152-1",
                "NP_062241.2",
                "BET1-like protein"
            ],
            [
                "O35152-1",
                "NP_062241.2",
                "GOS-15; Golgi soluble N-ethylmaleimide-sensitive factor attachment protein 15; golgi SNARE, 15 kD; vesicle transport protein GOS15; golgi SNARE with a size of 15 kDa; blocked early in transport 1 homolog like"
            ],
            [
                "O35152-1",
                "NP_062241",
                "BET1-like protein"
            ],
            [
                "O35152-1",
                "NP_062241",
                "GOS-15; Golgi soluble N-ethylmaleimide-sensitive factor attachment protein 15; golgi SNARE, 15 kD; vesicle transport protein GOS15; golgi SNARE with a size of 15 kDa; blocked early in transport 1 homolog like"
            ],
            [
                "P30936-1",
                "NP_598206.1",
                "somatostatin receptor type 3"
            ],
            [
                "P30936-1",
                "NP_598206.1",
                "SS3R; SSR-28; SS3-R; SS-3-R; somatostatin receptor 28; somatostatin receptor subtype 3"
            ],
            [
                "P30936-1",
                "NP_598206",
                "somatostatin receptor type 3"
            ],
            [
                "P30936-1",
                "NP_598206",
                "SS3R; SSR-28; SS3-R; SS-3-R; somatostatin receptor 28; somatostatin receptor subtype 3"
            ],
            [
                "O35158-1",
                "NP_059054.1",
                "cell adhesion molecule-related/down-regulated by oncogenes precursor"
            ],
            [
                "O35158-1",
                "NP_059054.1",
                "immunoglobulin superfamily member; cell adhesion molecule-related/down-regulated by oncogenes; Cdon homolog"
            ],
            [
                "O35158-1",
                "NP_059054",
                "cell adhesion molecule-related/down-regulated by oncogenes precursor"
            ],
            [
                "O35158-1",
                "NP_059054",
                "immunoglobulin superfamily member; cell adhesion molecule-related/down-regulated by oncogenes; Cdon homolog"
            ],
            [
                "P02761-1",
                "NP_671747.1",
                "major urinary protein precursor"
            ],
            [
                "P02761-1",
                "NP_671747.1",
                "major urinary protein; alpha-2u-globulin; alpha(2)-euglobulin; allergen n I; allergen Rat n I"
            ],
            [
                "P02761-1",
                "NP_671747",
                "major urinary protein precursor"
            ],
            [
                "P02761-1",
                "NP_671747",
                "major urinary protein; alpha-2u-globulin; alpha(2)-euglobulin; allergen n I; allergen Rat n I"
            ],
            [
                "P02764-1",
                "NP_445740.1",
                "alpha-1-acid glycoprotein precursor"
            ],
            [
                "P02764-1",
                "NP_445740.1",
                "alpha-1-acid glycoprotein"
            ],
            [
                "P02764-1",
                "NP_445740",
                "alpha-1-acid glycoprotein precursor"
            ],
            [
                "P02764-1",
                "NP_445740",
                "alpha-1-acid glycoprotein"
            ],
            [
                "P02767-1",
                "NP_036813.2",
                "transthyretin precursor"
            ],
            [
                "P02767-1",
                "NP_036813.2",
                "prealbumin, amyloidosis type I"
            ],
            [
                "P02767-1",
                "NP_036813",
                "transthyretin precursor"
            ],
            [
                "P02767-1",
                "NP_036813",
                "prealbumin, amyloidosis type I"
            ],
            [
                "D4A4W8-1",
                "NP_001099679.1",
                "brachyury protein"
            ],
            [
                "D4A4W8-1",
                "NP_001099679.1",
                "brachyury homolog; T brachyury transcription factor"
            ],
            [
                "D4A4W8-1",
                "NP_001099679",
                "brachyury protein"
            ],
            [
                "D4A4W8-1",
                "NP_001099679",
                "brachyury homolog; T brachyury transcription factor"
            ],
            [
                "D4A4W0-1",
                "NP_001000252.1",
                "olfactory receptor Olr338"
            ],
            [
                "D4A4W0-1",
                "NP_001000252.1",
                "olfactory receptor gene Olr338"
            ],
            [
                "D4A4W0-1",
                "NP_001000252",
                "olfactory receptor Olr338"
            ],
            [
                "D4A4W0-1",
                "NP_001000252",
                "olfactory receptor gene Olr338"
            ],
            [
                "D4A4W1-1",
                "XP_017443583.1",
                "membrane protein FAM174B isoform X1"
            ],
            [
                "D4A4W1-1",
                "XP_017443583",
                "membrane protein FAM174B isoform X1"
            ],
            [
                "F7EN52-1",
                "XP_006240610.1",
                "cholesterol 24-hydroxylase isoform X1"
            ],
            [
                "F7EN52-1",
                "XP_006240610",
                "cholesterol 24-hydroxylase isoform X1"
            ],
            [
                "D4A4W4-1",
                "NP_001102458.1",
                "epoxide hydrolase 3"
            ],
            [
                "D4A4W4-1",
                "NP_001102458.1",
                "abhydrolase domain containing 9"
            ]
        ]
    },
    "readme": "Name\n   - Rat Protein Names (NCBI RefSeq)\n\nVersion\n   - 1.10.6\n\nCreated on\n  - 2020-03-15T13:32:44.009025\n\nModified on\n   - 2020-03-16T11:19:19.372957\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Protein Names (NCBI RefSeq) dataset contains rat [taxid:10116] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_10116.gpff\n      URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_10116.gpff\n      Name: rat_protein_xref_refseq.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_refseq.csv\n   Output Subdomain\n      Name: rat_protein_proteinnames_refseq.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_proteinnames_refseq.csv\n      Name: rat_protein_proteinnames_refseq.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_proteinnames_refseq.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"123404\"",
    "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/rat_protein_proteinnames_refseq.csv"
}