{
    "bcoid": "GLY_000392",
    "title": "Human Protein Names (NCBI RefSeq)",
    "description": "The Human Protein Names (NCBI RefSeq) dataset contains human [taxid:9606] protein names (primary and ...",
    "filename": "human_protein_proteinnames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "Homo sapiens",
        "molecule": "Protein",
        "tags": "Protein Names",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P30613-1...",
                "NP_000289.1..."
            ],
            [
                "P30613-1...",
                "NP_000289.1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                }
            ],
            [
                "P30613-1",
                "NP_000289.1",
                "pyruvate kinase PKLR isoform 1"
            ],
            [
                "P30613-1",
                "NP_000289.1",
                "pyruvate kinase type L; pyruvate kinase, liver and blood cell; pyruvate kinase 1; pyruvate kinase isozyme R/L; R-type/L-type pyruvate kinase; red cell/liver pyruvate kinase; pyruvate kinase isozymes R/L; pyruvate kinase isozymes L/R; pyruvate kinase PKLR; pyruvate kinase, liver and RBC"
            ],
            [
                "P30613-1",
                "NP_000289",
                "pyruvate kinase PKLR isoform 1"
            ],
            [
                "P30613-1",
                "NP_000289",
                "pyruvate kinase type L; pyruvate kinase, liver and blood cell; pyruvate kinase 1; pyruvate kinase isozyme R/L; R-type/L-type pyruvate kinase; red cell/liver pyruvate kinase; pyruvate kinase isozymes R/L; pyruvate kinase isozymes L/R; pyruvate kinase PKLR; pyruvate kinase, liver and RBC"
            ],
            [
                "P23919-1",
                "NP_001158503.1",
                "thymidylate kinase isoform 2"
            ],
            [
                "P23919-1",
                "NP_001158503.1",
                "deoxythymidylate kinase (thymidylate kinase); dTMP kinase"
            ],
            [
                "P23919-1",
                "NP_001158503",
                "thymidylate kinase isoform 2"
            ],
            [
                "P23919-1",
                "NP_001158503",
                "deoxythymidylate kinase (thymidylate kinase); dTMP kinase"
            ],
            [
                "Q8NHX4-1",
                "NP_620712.2",
                "spermatogenesis-associated protein 3"
            ],
            [
                "Q8NHX4-1",
                "NP_620712.2",
                "testis and spermatogenesis cell apoptosis related gene 1; testis spermatocyte apoptosis-related protein 1; testis and spermatogenesis cell-related protein 1"
            ],
            [
                "Q8NHX4-1",
                "NP_620712",
                "spermatogenesis-associated protein 3"
            ],
            [
                "Q8NHX4-1",
                "NP_620712",
                "testis and spermatogenesis cell apoptosis related gene 1; testis spermatocyte apoptosis-related protein 1; testis and spermatogenesis cell-related protein 1"
            ],
            [
                "Q8NHX9-1",
                "NP_620714.2",
                "two pore calcium channel protein 2"
            ],
            [
                "Q8NHX9-1",
                "NP_620714.2",
                "voltage-dependent calcium channel protein TPC2"
            ],
            [
                "Q8NHX9-1",
                "NP_620714",
                "two pore calcium channel protein 2"
            ],
            [
                "Q8NHX9-1",
                "NP_620714",
                "voltage-dependent calcium channel protein TPC2"
            ],
            [
                "H3BTG2-1",
                "NP_001229450.1",
                "testis-expressed protein 46 precursor"
            ],
            [
                "H3BTG2-1",
                "NP_001229450.1",
                "uncharacterized protein C1orf234; testis-expressed protein 46"
            ],
            [
                "H3BTG2-1",
                "NP_001229450",
                "testis-expressed protein 46 precursor"
            ],
            [
                "H3BTG2-1",
                "NP_001229450",
                "uncharacterized protein C1orf234; testis-expressed protein 46"
            ],
            [
                "Q9C0H2-1",
                "NP_079526.1",
                "protein tweety homolog 3"
            ],
            [
                "Q9C0H2-1",
                "NP_079526.1",
                "hTTY3; tweety homolog 3"
            ],
            [
                "Q9C0H2-1",
                "NP_079526",
                "protein tweety homolog 3"
            ],
            [
                "Q9C0H2-1",
                "NP_079526",
                "hTTY3; tweety homolog 3"
            ],
            [
                "Q9C0H5-1",
                "NP_001295136.1",
                "rho GTPase-activating protein 39 isoform 1"
            ],
            [
                "Q9C0H5-1",
                "NP_001295136.1",
                "crossGAP homolog; RhoGAP93B homolog"
            ],
            [
                "Q9C0H5-1",
                "NP_001295136",
                "rho GTPase-activating protein 39 isoform 1"
            ],
            [
                "Q9C0H5-1",
                "NP_001295136",
                "crossGAP homolog; RhoGAP93B homolog"
            ],
            [
                "Q9C0H6-1",
                "NP_061990.2",
                "kelch-like protein 4 isoform 1"
            ],
            [
                "Q9C0H6-1",
                "NP_061990.2",
                "kelch-like protein 4"
            ],
            [
                "Q9C0H6-1",
                "NP_061990",
                "kelch-like protein 4 isoform 1"
            ],
            [
                "Q9C0H6-1",
                "NP_061990",
                "kelch-like protein 4"
            ],
            [
                "Q9C0H9-5",
                "NP_079524.2",
                "SRC kinase signaling inhibitor 1"
            ],
            [
                "Q9C0H9-5",
                "NP_079524.2",
                "SNAP25-interacting protein; p140Cap; P130Cas-associated protein; SNAP-25-interacting protein"
            ],
            [
                "Q9C0H9-5",
                "NP_079524",
                "SRC kinase signaling inhibitor 1"
            ],
            [
                "Q9C0H9-5",
                "NP_079524",
                "SNAP25-interacting protein; p140Cap; P130Cas-associated protein; SNAP-25-interacting protein"
            ],
            [
                "Q96J66-1",
                "NP_115972.2",
                "ATP-binding cassette sub-family C member 11 isoform a"
            ],
            [
                "Q96J66-1",
                "NP_115972.2",
                "ATP-binding cassette, sub-family C (CFTR/MRP), member 11; multi-resistance protein 8; ATP-binding cassette transporter MRP8; ATP-binding cassette protein C11; multidrug resistance-associated protein 8; ATP-binding cassette transporter sub-family C member 11; ATP-binding cassette sub-family C member 11"
            ],
            [
                "Q96J66-1",
                "NP_115972",
                "ATP-binding cassette sub-family C member 11 isoform a"
            ],
            [
                "Q96J66-1",
                "NP_115972",
                "ATP-binding cassette, sub-family C (CFTR/MRP), member 11; multi-resistance protein 8; ATP-binding cassette transporter MRP8; ATP-binding cassette protein C11; multidrug resistance-associated protein 8; ATP-binding cassette transporter sub-family C member 11; ATP-binding cassette sub-family C member 11"
            ],
            [
                "Q96J65-1",
                "NP_150229.2",
                "multidrug resistance-associated protein 9"
            ],
            [
                "Q96J65-1",
                "NP_150229.2",
                "ATP-binding cassette, sub-family C (CFTR/MRP), member 12; ATP-binding cassette transporter sub-family C member 12; ATP-binding cassette sub-family C member 12"
            ],
            [
                "Q96J65-1",
                "NP_150229",
                "multidrug resistance-associated protein 9"
            ],
            [
                "Q96J65-1",
                "NP_150229",
                "ATP-binding cassette, sub-family C (CFTR/MRP), member 12; ATP-binding cassette transporter sub-family C member 12; ATP-binding cassette sub-family C member 12"
            ],
            [
                "Q8NC06-1",
                "XP_016880588.1",
                "acyl-CoA-binding domain-containing protein 4 isoform X14"
            ],
            [
                "Q8NC06-1",
                "XP_016880588",
                "acyl-CoA-binding domain-containing protein 4 isoform X14"
            ],
            [
                "Q8NBW4-1",
                "NP_001269358.1",
                "sodium-coupled neutral amino acid transporter 9 isoform 4"
            ],
            [
                "Q8NBW4-1",
                "NP_001269358.1",
                "putative sodium-coupled neutral amino acid transporter 9; up-regulated in lung cancer 11"
            ],
            [
                "Q8NBW4-1",
                "NP_001269358",
                "sodium-coupled neutral amino acid transporter 9 isoform 4"
            ],
            [
                "Q8NBW4-1",
                "NP_001269358",
                "putative sodium-coupled neutral amino acid transporter 9; up-regulated in lung cancer 11"
            ],
            [
                "Q9NYS7-1",
                "NP_001265486.1",
                "WD repeat and SOCS box-containing protein 2 isoform 1"
            ],
            [
                "Q9NYS7-1",
                "NP_001265486.1",
                "WSB-2; CS box-containing WD protein; WD repeat and SOCS box-containing protein 2"
            ],
            [
                "Q9NYS7-1",
                "NP_001265486",
                "WD repeat and SOCS box-containing protein 2 isoform 1"
            ],
            [
                "Q9NYS7-1",
                "NP_001265486",
                "WSB-2; CS box-containing WD protein; WD repeat and SOCS box-containing protein 2"
            ],
            [
                "P40424-1",
                "NP_001191892.1",
                "pre-B-cell leukemia transcription factor 1 isoform 3"
            ],
            [
                "P40424-1",
                "NP_001191892.1",
                "pre-B-cell leukemia transcription factor 1; pre-B-cell leukemia homeobox 1; homeobox protein PRL; homeobox protein PBX1"
            ],
            [
                "P40424-1",
                "NP_001191892",
                "pre-B-cell leukemia transcription factor 1 isoform 3"
            ],
            [
                "P40424-1",
                "NP_001191892",
                "pre-B-cell leukemia transcription factor 1; pre-B-cell leukemia homeobox 1; homeobox protein PRL; homeobox protein PBX1"
            ],
            [
                "P40425-1",
                "NP_002577.2",
                "pre-B-cell leukemia transcription factor 2"
            ],
            [
                "P40425-1",
                "NP_002577.2",
                "homeobox 12; pre-B-cell leukemia homeobox 2; homeobox protein PBX2; XXbac-BPG300A18.13"
            ],
            [
                "P40425-1",
                "NP_002577",
                "pre-B-cell leukemia transcription factor 2"
            ],
            [
                "P40425-1",
                "NP_002577",
                "homeobox 12; pre-B-cell leukemia homeobox 2; homeobox protein PBX2; XXbac-BPG300A18.13"
            ],
            [
                "P40426-1",
                "NP_001128250.1",
                "pre-B-cell leukemia transcription factor 3 isoform 2"
            ],
            [
                "P40426-1",
                "NP_001128250.1",
                "pre-B-cell leukemia transcription factor 3; pre-B-cell leukemia homeobox 3; homeobox protein PBX3"
            ],
            [
                "P40426-1",
                "NP_001128250",
                "pre-B-cell leukemia transcription factor 3 isoform 2"
            ],
            [
                "P40426-1",
                "NP_001128250",
                "pre-B-cell leukemia transcription factor 3; pre-B-cell leukemia homeobox 3; homeobox protein PBX3"
            ],
            [
                "P40429-1",
                "NP_001257420.1",
                "60S ribosomal protein L13a isoform 2"
            ],
            [
                "P40429-1",
                "NP_001257420.1",
                "60S ribosomal protein L13a; 23 kDa highly basic protein; tissue specific transplantation antigen 1; large ribosomal subunit protein uL13; epididymis secretory sperm binding protein"
            ],
            [
                "P40429-1",
                "NP_001257420",
                "60S ribosomal protein L13a isoform 2"
            ],
            [
                "P40429-1",
                "NP_001257420",
                "60S ribosomal protein L13a; 23 kDa highly basic protein; tissue specific transplantation antigen 1; large ribosomal subunit protein uL13; epididymis secretory sperm binding protein"
            ],
            [
                "Q9H2I8-1",
                "NP_114413.1",
                "leucine-rich melanocyte differentiation-associated protein isoform 2"
            ],
            [
                "Q9H2I8-1",
                "NP_114413.1",
                "leucine-rich repeat-containing protein C10orf11; leucine-rich melanocyte differentiation-associated protein"
            ],
            [
                "Q9H2I8-1",
                "NP_114413",
                "leucine-rich melanocyte differentiation-associated protein isoform 2"
            ],
            [
                "Q9H2I8-1",
                "NP_114413",
                "leucine-rich repeat-containing protein C10orf11; leucine-rich melanocyte differentiation-associated protein"
            ],
            [
                "P03891-1",
                "YP_003024027.1",
                "NADH dehydrogenase subunit 2"
            ],
            [
                "P03891-1",
                "YP_003024027",
                "NADH dehydrogenase subunit 2"
            ],
            [
                "P03897-1",
                "YP_003024033.1",
                "NADH dehydrogenase subunit 3"
            ],
            [
                "P03897-1",
                "YP_003024033",
                "NADH dehydrogenase subunit 3"
            ],
            [
                "P02768-1",
                "NP_000468.1",
                "albumin preproprotein"
            ],
            [
                "P02768-1",
                "NP_000468.1",
                "serum albumin"
            ],
            [
                "P02768-1",
                "NP_000468",
                "albumin preproprotein"
            ],
            [
                "P02768-1",
                "NP_000468",
                "serum albumin"
            ],
            [
                "P02760-1",
                "NP_001624.1",
                "protein AMBP preproprotein"
            ],
            [
                "P02760-1",
                "NP_001624.1",
                "inter-alpha-trypsin inhibitor light chain; bikunin; growth-inhibiting protein 19; uristatin; protein HC; complex-forming glycoprotein heterogeneous in charge; uronic-acid-rich protein; trypstatin; protein AMBP"
            ]
        ]
    },
    "readme": "Name\n   - Human Protein Names (NCBI RefSeq)\n\nVersion\n   - 1.10.6\n\nCreated on\n  - 2020-03-15T13:26:46.282740\n\nModified on\n   - 2020-04-10T11:49:01.913927\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Protein Names (NCBI RefSeq) dataset contains human [taxid:9606] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_9606.gpff\n      URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_9606.gpff\n      Name: human_protein_xref_refseq.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_refseq.csv\n   Output Subdomain\n      Name: human_protein_proteinnames_refseq.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_proteinnames_refseq.csv\n      Name: human_protein_proteinnames_refseq.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_proteinnames_refseq.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"123404\"",
    "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_proteinnames_refseq.csv"
}