{ "bcoid": "GLY_000254", "title": "Mouse Phosphorylation Sites (UniProtKB)", "description": "The Mouse Phosphorylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical ...", "filename": "mouse_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Proteoform", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q4KUS2-1...", "239..." ], [ "Q9ERB0-1...", "212..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q4KUS2-1", "239", "Ser", "", "", "protein_xref_uniprotkb", "Q4KUS2", "protein_xref_uniprotkb", "Q4KUS2", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9ERB0-1", "212", "Ser", "", "", "protein_xref_uniprotkb", "Q9ERB0", "protein_xref_uniprotkb", "Q9ERB0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q3UJB9-1", "6", "Ser", "", "", "protein_xref_uniprotkb", "Q3UJB9", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q60592-1", "6", "Ser", "", "", "protein_xref_uniprotkb", "Q60592", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q5SVD0-1", "6", "Ser", "", "", "protein_xref_uniprotkb", "Q5SVD0", "protein_xref_uniprotkb", "Q5SVD0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8K2P6-1", "6", "Ser", "", "", "protein_xref_uniprotkb", "Q8K2P6", "protein_xref_uniprotkb", "Q8K2P6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9CW46-1", "6", "Ser", "", "", "protein_xref_uniprotkb", "Q9CW46", "protein_xref_uniprotkb", "Q9CW46", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9CQU3-1", "6", "Ser", "", "", "protein_xref_uniprotkb", "Q9CQU3", "protein_xref_uniprotkb", "Q9CQU3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q06986-1", "6", "Ser", "", "", "protein_xref_uniprotkb", "Q06986", "protein_xref_uniprotkb", "Q06986", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P70392-1", "736", "Ser", "", "", "protein_xref_uniprotkb", "P70392", "protein_xref_uniprotkb", "P70392", "Phosphoserine", "Phosphoserine; by CDK5", "" ], [ "O89090-1", "738", "Thr", "", "", "protein_xref_uniprotkb", "O89090", "protein_xref_uniprotkb", "O89090", "Phosphothreonine", "Phosphothreonine; by MAPK1, MAPK3 and MAPK8", "" ], [ "P29351-1", "64", "Tyr", "", "", "protein_xref_uniprotkb", "P29351", "protein_xref_uniprotkb", "P29351", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "O35099-1", "973", "Ser", "", "", "protein_xref_uniprotkb", "O35099", "protein_xref_uniprotkb", "O35099", "Phosphoserine", "Phosphoserine; by autocatalysis", "" ], [ "Q8VEK3-1", "243", "Ser", "", "", "protein_xref_uniprotkb", "Q8VEK3", "protein_xref_uniprotkb", "Q8VEK3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9QYY8-1", "243", "Ser", "", "", "protein_xref_uniprotkb", "Q9QYY8", "protein_xref_uniprotkb", "Q9QYY8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8BUN5-1", "418", "Ser", "", "", "protein_xref_uniprotkb", "Q8BUN5", "protein_xref_uniprotkb", "Q8BUN5", "Phosphoserine", "Phosphoserine; by CK1", "" ], [ "P47811-1", "16", "Thr", "", "", "protein_xref_uniprotkb", "P47811", "protein_xref_uniprotkb", "P47811", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q06986-1", "16", "Ser", "", "", "protein_xref_uniprotkb", "Q06986", "protein_xref_uniprotkb", "Q06986", "Phosphoserine", "Phosphoserine; by DYRK2", "" ], [ "O54829-1", "434", "Ser", "", "", "protein_xref_uniprotkb", "O54829", "protein_xref_uniprotkb", "O54829", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9D620-1", "434", "Ser", "", "", "protein_xref_uniprotkb", "Q9D620", "protein_xref_uniprotkb", "Q9D620", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P67778-1", "91", "Thr", "", "", "protein_xref_uniprotkb", "P67778", "protein_xref_uniprotkb", "P67778", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q9DBX1-1", "91", "Ser", "", "", "protein_xref_uniprotkb", "Q9DBX1", "protein_xref_uniprotkb", "Q9DBX1", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q6DFV3-1", "947", "Ser", "", "", "protein_xref_uniprotkb", "Q6DFV3", "protein_xref_uniprotkb", "Q6DFV3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P97393-1", "765", "Ser", "", "", "protein_xref_uniprotkb", "P97393", "protein_xref_uniprotkb", "P97393", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q3UJB9-1", "733", "Ser", "", "", "protein_xref_uniprotkb", "Q3UJB9", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9QXK2-1", "158", "Ser", "", "", "protein_xref_uniprotkb", "Q9QXK2", "protein_xref_uniprotkb", "Q9QXK2", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q7TNE3-1", "158", "Ser", "", "", "protein_xref_uniprotkb", "Q7TNE3", "protein_xref_uniprotkb", "Q7TNE3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35099-1", "965", "Ser", "", "", "protein_xref_uniprotkb", "O35099", "protein_xref_uniprotkb", "O35099", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O89090-1", "669", "Thr", "", "", "protein_xref_uniprotkb", "O89090", "protein_xref_uniprotkb", "O89090", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P35601-1", "163", "Ser", "", "", "protein_xref_uniprotkb", "P35601", "protein_xref_uniprotkb", "P35601", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8C0D4-1", "163", "Ser", "", "", "protein_xref_uniprotkb", "Q8C0D4", "protein_xref_uniprotkb", "Q8C0D4", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9ERB0-1", "163", "Ser", "", "", "protein_xref_uniprotkb", "Q9ERB0", "protein_xref_uniprotkb", "Q9ERB0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8CHD8-1", "938", "Ser", "", "", "protein_xref_uniprotkb", "Q8CHD8", "protein_xref_uniprotkb", "Q8CHD8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q5U5Q9-1", "140", "Ser", "", "", "protein_xref_uniprotkb", "Q5U5Q9", "protein_xref_uniprotkb", "Q5U5Q9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q61214-1", "140", "Tyr", "", "", "protein_xref_uniprotkb", "Q61214", "protein_xref_uniprotkb", "Q61214", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q03267-1", "140", "Thr", "", "", "protein_xref_uniprotkb", "Q03267", "protein_xref_uniprotkb", "Q03267", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q03267-1", "140", "Thr", "", "", "protein_xref_pubmed", "12464629", "protein_xref_uniprotkb", "Q03267", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q8BP92-1", "140", "Thr", "", "", "protein_xref_uniprotkb", "Q8BP92", "protein_xref_uniprotkb", "Q8BP92", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "O08547-1", "140", "Thr", "", "", "protein_xref_uniprotkb", "O08547", "protein_xref_uniprotkb", "O08547", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q8C4V1-1", "412", "Ser", "", "", "protein_xref_uniprotkb", "Q8C4V1", "protein_xref_uniprotkb", "Q8C4V1", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q3UJB9-1", "727", "Ser", "", "", "protein_xref_uniprotkb", "Q3UJB9", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8VDU5-1", "390", "Ser", "", "", "protein_xref_uniprotkb", "Q8VDU5", "protein_xref_uniprotkb", "Q8VDU5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P31750-1", "450", "Thr", "", "", "protein_xref_uniprotkb", "P31750", "protein_xref_uniprotkb", "P31750", "Phosphothreonine", "Phosphothreonine; by MTOR", "" ], [ "Q505F1-1", "461", "Ser", "", "", "protein_xref_uniprotkb", "Q505F1", "protein_xref_uniprotkb", "Q505F1", "Phosphoserine", "Phosphoserine; by PKC", "" ], [ "Q148V7-1", "54", "Ser", "", "", "protein_xref_uniprotkb", "Q148V7", "protein_xref_uniprotkb", "Q148V7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P48377-1", "54", "Ser", "", "", "protein_xref_uniprotkb", "P48377", "protein_xref_uniprotkb", "P48377", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8BKX1-1", "341", "Thr", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q03160-1", "341", "Tyr", "", "", "protein_xref_uniprotkb", "Q03160", "protein_xref_uniprotkb", "Q03160", "Phosphotyrosine", "Phosphotyrosine; by FAK1", "" ], [ "P59281-1", "403", "Ser", "", "", "protein_xref_uniprotkb", "P59281", "protein_xref_uniprotkb", "P59281", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9Z2D6-1", "116", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z2D6", "protein_xref_uniprotkb", "Q9Z2D6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q811M1-1", "51", "Ser", "", "", "protein_xref_uniprotkb", "Q811M1", "protein_xref_uniprotkb", "Q811M1", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P70698-1", "562", "Ser", "", "", "protein_xref_uniprotkb", "P70698", "protein_xref_uniprotkb", "P70698", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P25799-1", "755", "Ser", "", "", "protein_xref_uniprotkb", "P25799", "protein_xref_uniprotkb", "P25799", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P35922-1", "336", "Ser", "", "", "protein_xref_uniprotkb", "P35922", "protein_xref_uniprotkb", "P35922", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P48379-1", "411", "Ser", "", "", "protein_xref_uniprotkb", "P48379", "protein_xref_uniprotkb", "P48379", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8K1A5-1", "35", "Ser", "", "", "protein_xref_uniprotkb", "Q8K1A5", "protein_xref_uniprotkb", "Q8K1A5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8C796-1", "35", "Ser", "", "", "protein_xref_uniprotkb", "Q8C796", "protein_xref_uniprotkb", "Q8C796", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9Z1E3-1", "288", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z1E3", "protein_xref_uniprotkb", "Q9Z1E3", "Phosphoserine", "Phosphoserine; by CK2", "" ], [ "O54916-1", "288", "Tyr", "", "", "protein_xref_uniprotkb", "O54916", "protein_xref_uniprotkb", "O54916", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "Q9WTK5-1", "812", "Ser", "", "", "protein_xref_uniprotkb", "Q9WTK5", "protein_xref_uniprotkb", "Q9WTK5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "A2CG63-1", "1154", "Ser", "", "", "protein_xref_uniprotkb", "A2CG63", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8VC70-1", "108", "Ser", "", "", "protein_xref_uniprotkb", "Q8VC70", "protein_xref_uniprotkb", "Q8VC70", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q3UZ01-1", "108", "Ser", "", "", "protein_xref_uniprotkb", "Q3UZ01", "protein_xref_uniprotkb", "Q3UZ01", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O70551-1", "548", "Ser", "", "", "protein_xref_uniprotkb", "O70551", "protein_xref_uniprotkb", "O70551", "Phosphoserine", "Phosphoserine; by CK2", "" ], [ "Q8BKX1-1", "337", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P35922-1", "337", "Ser", "", "", "protein_xref_uniprotkb", "P35922", "protein_xref_uniprotkb", "P35922", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P35601-1", "162", "Thr", "", "", "protein_xref_uniprotkb", "P35601", "protein_xref_uniprotkb", "P35601", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "O54916-1", "162", "Ser", "", "", "protein_xref_uniprotkb", "O54916", "protein_xref_uniprotkb", "O54916", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q3UJB9-1", "1385", "Ser", "", "", "protein_xref_uniprotkb", "Q3UJB9", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q60592-1", "1385", "Ser", "", "", "protein_xref_uniprotkb", "Q60592", "protein_xref_uniprotkb", "Q60592", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P30999-1", "346", "Ser", "", "", "protein_xref_uniprotkb", "P30999", "protein_xref_uniprotkb", "P30999", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "E9Q4N7-1", "468", "Ser", "", "", "protein_xref_uniprotkb", "E9Q4N7", "protein_xref_uniprotkb", "E9Q4N7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35625-1", "468", "Ser", "", "", "protein_xref_uniprotkb", "O35625", "protein_xref_uniprotkb", "O35625", "Phosphoserine", "Phosphoserine; by CK1", "" ], [ "Q9CX84-1", "97", "Ser", "", "", "protein_xref_uniprotkb", "Q9CX84", "protein_xref_uniprotkb", "Q9CX84", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q3UJB9-1", "897", "Ser", "", "", "protein_xref_uniprotkb", "Q3UJB9", "protein_xref_uniprotkb", "Q3UJB9", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q32MG2-1", "88", "Ser", "", "", "protein_xref_uniprotkb", "Q32MG2", "protein_xref_uniprotkb", "Q32MG2", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q62432-1", "464", "Ser", "", "", "protein_xref_uniprotkb", "Q62432", "protein_xref_uniprotkb", "Q62432", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q62432-1", "464", "Ser", "", "", "protein_xref_uniprotkb", "Q62432", "protein_xref_uniprotkb", "Q62432", "Phosphoserine", "Phosphoserine", "ECO_0000255" ], [ "Q8BHN5-1", "464", "Ser", "", "", "protein_xref_uniprotkb", "Q8BHN5", "protein_xref_uniprotkb", "Q8BHN5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q60778-1", "19", "Ser", "", "", "protein_xref_uniprotkb", "Q60778", "protein_xref_uniprotkb", "Q60778", "Phosphoserine", "Phosphoserine; by RPS6KA1", "" ], [ "Q04863-1", "19", "Ser", "", "", "protein_xref_uniprotkb", "Q04863", "protein_xref_uniprotkb", "Q04863", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P61092-1", "19", "Ser", "", "", "protein_xref_uniprotkb", "P61092", "protein_xref_uniprotkb", "P61092", "Phosphoserine", "Phosphoserine; by ATM and ATR", "" ], [ "P25799-1", "935", "Ser", "", "", "protein_xref_uniprotkb", "P25799", "protein_xref_uniprotkb", "P25799", "Phosphoserine", "Phosphoserine; by IKKB", "" ], [ "Q91XC0-1", "89", "Ser", "", "", "protein_xref_uniprotkb", "Q91XC0", "protein_xref_uniprotkb", "Q91XC0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ] ] }, "readme": "Name\n - Mouse Phosphorylation Sites (UniProtKB)\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-09-06T14:06:38.981217\n\nModified on\n - 2020-04-10T12:46:17.110364\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Phosphorylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv" }