{ "bcoid": "GLY_000231", "title": "Rat Phosphorylation Sites (UniProtKB)", "description": "The Rat Phosphorylation Sites (UniProtKB) dataset contains rat [taxid:10116] UniProtKB canonical accessions ...", "filename": "rat_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "A0A0G2JUG7-1...", "924..." ], [ "P12711-1...", "351..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "A0A0G2JUG7-1", "924", "Ser", "", "", "protein_xref_uniprotkb", "A0A0G2JUG7", "protein_xref_uniprotkb", "A0A0G2JUG7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P12711-1", "351", "Ser", "", "", "protein_xref_uniprotkb", "P12711", "protein_xref_uniprotkb", "P12711", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35433-1", "502", "Ser", "", "", "protein_xref_uniprotkb", "O35433", "protein_xref_uniprotkb", "O35433", "Phosphoserine", "Phosphoserine; by PKC/PRKCE", "" ], [ "P10686-1", "1221", "Ser", "", "", "protein_xref_uniprotkb", "G3V845", "protein_xref_uniprotkb", "G3V845", "Phosphoserine", "Phosphoserine", "ECO_0000256" ], [ "P04177-1", "19", "Ser", "", "", "protein_xref_uniprotkb", "P04177", "protein_xref_uniprotkb", "P04177", "Phosphoserine", "Phosphoserine; by CaMK2", "" ], [ "P18666-1", "19", "Thr", "", "", "protein_xref_uniprotkb", "P18666", "protein_xref_uniprotkb", "P18666", "Phosphothreonine", "Phosphothreonine; by MLCK and ZIPK/DAPK3", "" ], [ "D3ZHV2-1", "57", "Ser", "", "", "protein_xref_uniprotkb", "D3ZHV2", "protein_xref_uniprotkb", "D3ZHV2", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P11497-1", "57", "Thr", "", "", "protein_xref_uniprotkb", "P11497", "protein_xref_uniprotkb", "P11497", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q9QZR6-1", "125", "Thr", "", "", "protein_xref_uniprotkb", "Q9QZR6", "protein_xref_uniprotkb", "Q9QZR6", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q5M9H0-1", "366", "Ser", "", "", "protein_xref_uniprotkb", "Q5M9H0", "protein_xref_uniprotkb", "Q5M9H0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P17325-1", "252", "Ser", "", "", "protein_xref_uniprotkb", "P17325", "protein_xref_uniprotkb", "P17325", "Phosphoserine", "Phosphoserine; by GSK3-beta", "" ], [ "A0A0G2JUG7-1", "252", "Ser", "", "", "protein_xref_uniprotkb", "A0A0G2JUG7", "protein_xref_uniprotkb", "A0A0G2JUG7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "B4F7E7-1", "84", "Ser", "", "", "protein_xref_uniprotkb", "B4F7E7", "protein_xref_uniprotkb", "B4F7E7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JHY7-1", "117", "Thr", "", "", "protein_xref_uniprotkb", "Q9JHY7", "protein_xref_uniprotkb", "Q9JHY7", "Phosphothreonine", "Phosphothreonine; by AURKB", "" ], [ "Q8VHF0-1", "419", "Ser", "", "", "protein_xref_uniprotkb", "Q8VHF0", "protein_xref_uniprotkb", "Q8VHF0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35433-1", "116", "Ser", "", "", "protein_xref_uniprotkb", "O35433", "protein_xref_uniprotkb", "O35433", "Phosphoserine", "Phosphoserine; by PKA and PKD", "" ], [ "G3V9H8-1", "1097", "Tyr", "", "", "protein_xref_uniprotkb", "G3V9H8", "protein_xref_uniprotkb", "G3V9H8", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q9Z270-1", "219", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z270", "protein_xref_uniprotkb", "Q9Z270", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "F1LNJ2-1", "2136", "Ser", "", "", "protein_xref_uniprotkb", "F1LNJ2", "protein_xref_uniprotkb", "F1LNJ2", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "F1LNJ2-1", "2005", "Ser", "", "", "protein_xref_uniprotkb", "F1LNJ2", "protein_xref_uniprotkb", "F1LNJ2", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "F1LTE0-1", "1826", "Ser", "", "", "protein_xref_uniprotkb", "F1LTE0", "protein_xref_uniprotkb", "F1LTE0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "F1LNJ2-1", "2134", "Thr", "", "", "protein_xref_uniprotkb", "F1LNJ2", "protein_xref_uniprotkb", "F1LNJ2", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P34926-1", "898", "Ser", "", "", "protein_xref_uniprotkb", "P34926", "protein_xref_uniprotkb", "P34926", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35889-1", "1335", "Ser", "", "", "protein_xref_uniprotkb", "O35889", "protein_xref_uniprotkb", "O35889", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JKS6-1", "3561", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JKS6-1", "3522", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "D3ZHV2-1", "3368", "Thr", "", "", "protein_xref_uniprotkb", "D3ZHV2", "protein_xref_uniprotkb", "D3ZHV2", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "D3ZHV2-1", "5375", "Ser", "", "", "protein_xref_uniprotkb", "D3ZHV2", "protein_xref_uniprotkb", "D3ZHV2", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JKS6-1", "2511", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P15205-1", "1785", "Ser", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P11497-1", "2152", "Thr", "", "", "protein_xref_uniprotkb", "P11497", "protein_xref_uniprotkb", "P11497", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P15205-1", "1794", "Ser", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P15205-1", "1789", "Tyr", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "Q9JKS6-1", "4311", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "G3V928-1", "4461", "Thr", "", "", "protein_xref_uniprotkb", "G3V928", "protein_xref_uniprotkb", "G3V928", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P15205-1", "2407", "Ser", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "G3V928-1", "4521", "Ser", "", "", "protein_xref_uniprotkb", "G3V928", "protein_xref_uniprotkb", "G3V928", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "G3V928-1", "4524", "Ser", "", "", "protein_xref_uniprotkb", "G3V928", "protein_xref_uniprotkb", "G3V928", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JKS6-1", "4308", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JKS6-1", "3565", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JKS6-1", "3388", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JKS6-1", "4609", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q62696-1", "574", "Ser", "", "", "protein_xref_uniprotkb", "Q62696", "protein_xref_uniprotkb", "Q62696", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "G3V9H8-1", "901", "Tyr", "", "", "protein_xref_uniprotkb", "G3V9H8", "protein_xref_uniprotkb", "G3V9H8", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P15205-1", "901", "Thr", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P34058-1", "297", "Thr", "", "", "protein_xref_uniprotkb", "P34058", "protein_xref_uniprotkb", "P34058", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q5RKH0-1", "539", "Ser", "", "", "protein_xref_uniprotkb", "Q5RKH0", "protein_xref_uniprotkb", "Q5RKH0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P21707-1", "229", "Tyr", "", "", "protein_xref_uniprotkb", "P21707", "protein_xref_uniprotkb", "P21707", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "Q63604-1", "701", "Tyr", "", "", "protein_xref_uniprotkb", "Q63604", "protein_xref_uniprotkb", "Q63604", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q9QXN1-1", "153", "Thr", "", "", "protein_xref_uniprotkb", "Q9QXN1", "protein_xref_uniprotkb", "Q9QXN1", "Phosphothreonine", "Phosphothreonine; by NLK", "" ], [ "Q9JLA3-1", "1277", "Ser", "", "", "protein_xref_uniprotkb", "Q9JLA3", "protein_xref_uniprotkb", "Q9JLA3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8K3Y6-1", "262", "Ser", "", "", "protein_xref_uniprotkb", "Q8K3Y6", "protein_xref_uniprotkb", "Q8K3Y6", "Phosphoserine", "Phosphoserine; by GSK3-beta", "" ], [ "P08050-1", "262", "Ser", "", "", "protein_xref_uniprotkb", "P08050", "protein_xref_uniprotkb", "P08050", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P16638-1", "458", "Ser", "", "", "protein_xref_uniprotkb", "P16638", "protein_xref_uniprotkb", "P16638", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P63142-1", "458", "Tyr", "", "", "protein_xref_uniprotkb", "P63142", "protein_xref_uniprotkb", "P63142", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000305" ], [ "P63142-1", "458", "Tyr", "", "", "protein_xref_pubmed", "21602278", "protein_xref_uniprotkb", "P63142", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000305" ], [ "D3ZS28-1", "992", "Thr", "", "", "protein_xref_uniprotkb", "D3ZS28", "protein_xref_uniprotkb", "D3ZS28", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P04764-1", "263", "Ser", "", "", "protein_xref_uniprotkb", "P04764", "protein_xref_uniprotkb", "P04764", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "G3V928-1", "4508", "Tyr", "", "", "protein_xref_uniprotkb", "G3V928", "protein_xref_uniprotkb", "G3V928", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "Q5U2Y3-1", "409", "Ser", "", "", "protein_xref_uniprotkb", "Q5U2Y3", "protein_xref_uniprotkb", "Q5U2Y3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P0C1X8-1", "14", "Ser", "", "", "protein_xref_uniprotkb", "P0C1X8", "protein_xref_uniprotkb", "P0C1X8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9EPJ0-1", "14", "Ser", "", "", "protein_xref_uniprotkb", "Q9EPJ0", "protein_xref_uniprotkb", "Q9EPJ0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "B4F7E7-1", "14", "Ser", "", "", "protein_xref_uniprotkb", "B4F7E7", "protein_xref_uniprotkb", "B4F7E7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P14408-1", "233", "Thr", "", "", "protein_xref_uniprotkb", "P14408", "protein_xref_uniprotkb", "P14408", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "F1LTE0-1", "1460", "Ser", "", "", "protein_xref_uniprotkb", "F1LTE0", "protein_xref_uniprotkb", "F1LTE0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q63627-1", "722", "Ser", "", "", "protein_xref_uniprotkb", "Q63627", "protein_xref_uniprotkb", "Q63627", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35815-1", "272", "Ser", "", "", "protein_xref_uniprotkb", "O35815", "protein_xref_uniprotkb", "O35815", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P22449-1", "313", "Ser", "", "", "protein_xref_uniprotkb", "P22449", "protein_xref_uniprotkb", "P22449", "Phosphoserine", "Phosphoserine; by AMPK", "" ], [ "Q62915-1", "313", "Ser", "", "", "protein_xref_uniprotkb", "Q62915", "protein_xref_uniprotkb", "Q62915", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P13437-1", "333", "Ser", "", "", "protein_xref_uniprotkb", "P13437", "protein_xref_uniprotkb", "P13437", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P17325-1", "58", "Ser", "", "", "protein_xref_uniprotkb", "P17325", "protein_xref_uniprotkb", "P17325", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35889-1", "1337", "Thr", "", "", "protein_xref_uniprotkb", "O35889", "protein_xref_uniprotkb", "O35889", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q63623-1", "6", "Thr", "", "", "protein_xref_uniprotkb", "Q63623", "protein_xref_uniprotkb", "Q63623", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "O08984-1", "123", "Thr", "", "", "protein_xref_uniprotkb", "O08984", "protein_xref_uniprotkb", "O08984", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P16638-1", "450", "Ser", "", "", "protein_xref_uniprotkb", "P16638", "protein_xref_uniprotkb", "P16638", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P16638-1", "450", "Ser", "", "", "protein_xref_pubmed", "2176822", "protein_xref_uniprotkb", "P16638", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q6AXT7-1", "133", "Ser", "", "", "protein_xref_uniprotkb", "Q6AXT7", "protein_xref_uniprotkb", "Q6AXT7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O08835-1", "133", "Ser", "", "", "protein_xref_uniprotkb", "O08835", "protein_xref_uniprotkb", "O08835", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O08984-1", "133", "Ser", "", "", "protein_xref_uniprotkb", "O08984", "protein_xref_uniprotkb", "O08984", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9Z327-1", "856", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z327", "protein_xref_uniprotkb", "Q9Z327", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P11497-1", "1226", "Thr", "", "", "protein_xref_uniprotkb", "P11497", "protein_xref_uniprotkb", "P11497", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "D3ZS28-1", "385", "Thr", "", "", "protein_xref_uniprotkb", "D3ZS28", "protein_xref_uniprotkb", "D3ZS28", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q63604-1", "706", "Tyr", "", "", "protein_xref_uniprotkb", "Q63604", "protein_xref_uniprotkb", "Q63604", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P39052-1", "231", "Tyr", "", "", "protein_xref_uniprotkb", "P39052", "protein_xref_uniprotkb", "P39052", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000305" ] ] }, "readme": "Name\n - Rat Phosphorylation Sites (UniProtKB)\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-09-06T14:06:38.959200\n\nModified on\n - 2020-04-10T11:53:53.248846\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Phosphorylation Sites (UniProtKB) dataset contains rat [taxid:10116] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-rattus-norvegicus.nt\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: rat_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: rat_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv" }