{ "bcoid": "GLY_000121", "title": "Human UniProtKB Xref Pfam", "description": "The Human UniProtKB Xref Pfam contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_pfam.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Pfam cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O75818-1...", "protein_xref..." ], [ "P30613-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "O75818-1", "protein_xref_pfam", "PF08584", "Ribonuc_P_40" ], [ "P30613-1", "protein_xref_pfam", "PF00224", "PK" ], [ "P30613-1", "protein_xref_pfam", "PF02887", "PK_C" ], [ "P05093-1", "protein_xref_pfam", "PF00067", "p450" ], [ "A0A1W2PQ27-1", "protein_xref_pfam", "PF04722", "Ssu72" ], [ "Q8TEU7-1", "protein_xref_pfam", "PF00618", "RasGEF_N" ], [ "Q8TEU7-1", "protein_xref_pfam", "PF00788", "RA" ], [ "Q8TEU7-1", "protein_xref_pfam", "PF00595", "PDZ" ], [ "Q8TEU7-1", "protein_xref_pfam", "PF00617", "RasGEF" ], [ "Q8TEU7-1", "protein_xref_pfam", "PF00027", "cNMP_binding" ], [ "P09471-1", "protein_xref_pfam", "PF00503", "G-alpha" ], [ "Q92994-1", "protein_xref_pfam", "PF00382", "TFIIB" ], [ "Q7RTN6-1", "protein_xref_pfam", "PF00069", "Pkinase" ], [ "O75962-1", "protein_xref_pfam", "PF00018", "SH3_1" ], [ "O75962-1", "protein_xref_pfam", "PF00169", "PH" ], [ "O75962-1", "protein_xref_pfam", "PF00621", "RhoGEF" ], [ "O75962-1", "protein_xref_pfam", "PF00435", "Spectrin" ], [ "O75962-1", "protein_xref_pfam", "PF07679", "I-set" ], [ "P23919-1", "protein_xref_pfam", "PF02223", "Thymidylate_kin" ], [ "Q8NHX4-1", "protein_xref_pfam", "PF15662", "SPATA3" ], [ "Q8NHX9-1", "protein_xref_pfam", "PF00520", "Ion_trans" ], [ "H3BTG2-1", "protein_xref_pfam", "PF17671", "DUF5531" ], [ "P10242-1", "protein_xref_pfam", "PF00249", "Myb_DNA-binding" ], [ "P10242-1", "protein_xref_pfam", "PF07988", "LMSTEN" ], [ "Q9GZW8-1", "protein_xref_pfam", "PF04103", "CD20" ], [ "Q9C0H2-1", "protein_xref_pfam", "PF04906", "Tweety" ], [ "Q9C0H5-1", "protein_xref_pfam", "PF00620", "RhoGAP" ], [ "Q9C0H5-1", "protein_xref_pfam", "PF00784", "MyTH4" ], [ "Q9C0H6-1", "protein_xref_pfam", "PF00651", "BTB" ], [ "Q9C0H6-1", "protein_xref_pfam", "PF01344", "Kelch_1" ], [ "Q9C0H6-1", "protein_xref_pfam", "PF07707", "BACK" ], [ "Q9C0H9-5", "protein_xref_pfam", "PF03915", "AIP3" ], [ "Q8N6H7-1", "protein_xref_pfam", "PF01412", "ArfGap" ], [ "Q96J66-1", "protein_xref_pfam", "PF00005", "ABC_tran" ], [ "Q96J66-1", "protein_xref_pfam", "PF00664", "ABC_membrane" ], [ "Q9BTE7-1", "protein_xref_pfam", "PF03556", "Cullin_binding" ], [ "Q96J65-1", "protein_xref_pfam", "PF00005", "ABC_tran" ], [ "Q96J65-1", "protein_xref_pfam", "PF00664", "ABC_membrane" ], [ "Q9BUZ4-1", "protein_xref_pfam", "PF00097", "zf-C3HC4" ], [ "Q8NC06-1", "protein_xref_pfam", "PF00887", "ACBP" ], [ "Q8IYT4-1", "protein_xref_pfam", "PF00004", "AAA" ], [ "A6NC51-1", "protein_xref_pfam", "PF10277", "Frag1" ], [ "Q8NBW4-1", "protein_xref_pfam", "PF01490", "Aa_trans" ], [ "Q9NYS7-1", "protein_xref_pfam", "PF00400", "WD40" ], [ "Q9NYS7-1", "protein_xref_pfam", "PF07525", "SOCS_box" ], [ "P40424-1", "protein_xref_pfam", "PF00046", "Homeodomain" ], [ "P40424-1", "protein_xref_pfam", "PF03792", "PBC" ], [ "P40425-1", "protein_xref_pfam", "PF00046", "Homeodomain" ], [ "P40425-1", "protein_xref_pfam", "PF03792", "PBC" ], [ "P40426-1", "protein_xref_pfam", "PF00046", "Homeodomain" ], [ "P40426-1", "protein_xref_pfam", "PF03792", "PBC" ], [ "P40429-1", "protein_xref_pfam", "PF00572", "Ribosomal_L13" ], [ "O14513-1", "protein_xref_pfam", "PF15246", "NCKAP5" ], [ "P03891-1", "protein_xref_pfam", "PF06444", "NADH_dehy_S2_C" ], [ "P03891-1", "protein_xref_pfam", "PF00361", "Proton_antipo_M" ], [ "Q15326-1", "protein_xref_pfam", "PF00439", "Bromodomain" ], [ "Q15326-1", "protein_xref_pfam", "PF00855", "PWWP" ], [ "Q9H079-1", "protein_xref_pfam", "PF13925", "Katanin_con80" ], [ "P03897-1", "protein_xref_pfam", "PF00507", "Oxidored_q4" ], [ "P02768-1", "protein_xref_pfam", "PF00273", "Serum_albumin" ], [ "Q9UGJ0-1", "protein_xref_pfam", "PF00571", "CBS" ], [ "P35749-1", "protein_xref_pfam", "PF00063", "Myosin_head" ], [ "P35749-1", "protein_xref_pfam", "PF02736", "Myosin_N" ], [ "P02760-1", "protein_xref_pfam", "PF00014", "Kunitz_BPTI" ], [ "P02760-1", "protein_xref_pfam", "PF00061", "Lipocalin" ], [ "P02763-1", "protein_xref_pfam", "PF00061", "Lipocalin" ], [ "P02765-1", "protein_xref_pfam", "PF00031", "Cystatin" ], [ "P82921-1", "protein_xref_pfam", "PF01165", "Ribosomal_S21" ], [ "P02766-1", "protein_xref_pfam", "PF00576", "Transthyretin" ], [ "Q4G0P3-1", "protein_xref_pfam", "PF15780", "ASH" ], [ "P43146-1", "protein_xref_pfam", "PF07679", "I-set" ], [ "A0A494C086-1", "protein_xref_pfam", "PF11357", "Spy1" ], [ "Q86W25-1", "protein_xref_pfam", "PF02758", "PYRIN" ], [ "Q86W25-1", "protein_xref_pfam", "PF13516", "LRR_6" ], [ "Q86W25-1", "protein_xref_pfam", "PF05729", "NACHT" ], [ "Q86W25-1", "protein_xref_pfam", "PF17776", "NLRC4_HD2" ], [ "Q86W25-1", "protein_xref_pfam", "PF17779", "NOD2_WH" ], [ "Q9Y2T1-1", "protein_xref_pfam", "PF00615", "RGS" ], [ "Q9Y2T1-1", "protein_xref_pfam", "PF16646", "AXIN1_TNKS_BD" ], [ "P49789-1", "protein_xref_pfam", "PF01230", "HIT" ], [ "Q9P2J5-1", "protein_xref_pfam", "PF00133", "tRNA-synt_1" ], [ "Q9P2J5-1", "protein_xref_pfam", "PF08264", "Anticodon_1" ], [ "P13804-1", "protein_xref_pfam", "PF00766", "ETF_alpha" ], [ "P13804-1", "protein_xref_pfam", "PF01012", "ETF" ] ] }, "readme": "Name\n - Human UniProtKB Xref Pfam\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-03-15T15:58:30.083377\n\nModified on\n - 2020-04-10T11:39:12.484631\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref Pfam contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to Pfam database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - Pfam is a database of protein families that includes their annotations and multiple sequence alignments generated using hidden Markov models.\n\nDescription Domain\n Keywords\n - protein family\n - Pfam\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Pfam database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_pfam.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_pfam.csv\n Name: human_protein_xref_pfam.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_pfam.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_xref_pfam.csv" }