{ "bcoid": "GLY_000117", "title": "Human UniProtKB Xref PANTHER", "description": "The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O75818-1...", "protein_xref..." ], [ "P30613-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "O75818-1", "protein_xref_panther", "PTHR15396", "PTHR15396" ], [ "P30613-1", "protein_xref_panther", "PTHR11817", "PTHR11817" ], [ "A0A1W2PQ27-1", "protein_xref_panther", "PTHR20383", "PTHR20383" ], [ "Q8TEU7-1", "protein_xref_panther", "PTHR23113", "PTHR23113" ], [ "P09471-1", "protein_xref_panther", "PTHR10218", "PTHR10218" ], [ "Q92994-1", "protein_xref_panther", "PTHR11618:SF4", "PTHR11618:SF4" ], [ "Q92994-1", "protein_xref_panther", "PTHR11618", "PTHR11618" ], [ "P23769-1", "protein_xref_panther", "PTHR10071:SF149", "PTHR10071:SF149" ], [ "P23769-1", "protein_xref_panther", "PTHR10071", "PTHR10071" ], [ "O75962-1", "protein_xref_panther", "PTHR22826:SF104", "PTHR22826:SF104" ], [ "Q8NHX4-1", "protein_xref_panther", "PTHR22234", "PTHR22234" ], [ "Q8NHX9-1", "protein_xref_panther", "PTHR46768", "PTHR46768" ], [ "H3BTG2-1", "protein_xref_panther", "PTHR39412", "PTHR39412" ], [ "Q9GZW8-1", "protein_xref_panther", "PTHR23320", "PTHR23320" ], [ "Q9GZW8-1", "protein_xref_panther", "PTHR23320:SF8", "PTHR23320:SF8" ], [ "Q9C0H2-1", "protein_xref_panther", "PTHR12424", "PTHR12424" ], [ "Q9C0H9-5", "protein_xref_panther", "PTHR22741:SF5", "PTHR22741:SF5" ], [ "Q96J66-1", "protein_xref_panther", "PTHR24223:SF168", "PTHR24223:SF168" ], [ "Q9BTE7-1", "protein_xref_panther", "PTHR12281", "PTHR12281" ], [ "Q96J65-1", "protein_xref_panther", "PTHR24223:SF10", "PTHR24223:SF10" ], [ "Q6UW68-1", "protein_xref_panther", "PTHR46916", "PTHR46916" ], [ "P40429-1", "protein_xref_panther", "PTHR11545", "PTHR11545" ], [ "P35442-1", "protein_xref_panther", "PTHR10199:SF10", "PTHR10199:SF10" ], [ "Q9H2I8-1", "protein_xref_panther", "PTHR46282", "PTHR46282" ], [ "O14513-1", "protein_xref_panther", "PTHR21740", "PTHR21740" ], [ "Q9H079-1", "protein_xref_panther", "PTHR14682", "PTHR14682" ], [ "P03897-1", "protein_xref_panther", "PTHR11058", "PTHR11058" ], [ "P02768-1", "protein_xref_panther", "PTHR11385", "PTHR11385" ], [ "O94916-1", "protein_xref_panther", "PTHR12533", "PTHR12533" ], [ "O94916-1", "protein_xref_panther", "PTHR12533:SF10", "PTHR12533:SF10" ], [ "Q9Y237-1", "protein_xref_panther", "PTHR45995", "PTHR45995" ], [ "Q9UGJ0-1", "protein_xref_panther", "PTHR13780:SF122", "PTHR13780:SF122" ], [ "P02760-1", "protein_xref_panther", "PTHR46676", "PTHR46676" ], [ "P82921-1", "protein_xref_panther", "PTHR21109", "PTHR21109" ], [ "P02766-1", "protein_xref_panther", "PTHR10395", "PTHR10395" ], [ "P02766-1", "protein_xref_panther", "PTHR10395:SF12", "PTHR10395:SF12" ], [ "Q4G0P3-1", "protein_xref_panther", "PTHR23053", "PTHR23053" ], [ "P43146-1", "protein_xref_panther", "PTHR44170:SF8", "PTHR44170:SF8" ], [ "A0A494C086-1", "protein_xref_panther", "PTHR31156", "PTHR31156" ], [ "Q9Y2T1-1", "protein_xref_panther", "PTHR46102", "PTHR46102" ], [ "Q9BTE0-1", "protein_xref_panther", "PTHR13256", "PTHR13256" ], [ "Q6E0U4-1", "protein_xref_panther", "PTHR36881", "PTHR36881" ], [ "Q96Q35-1", "protein_xref_panther", "PTHR21707", "PTHR21707" ], [ "Q9P2J5-1", "protein_xref_panther", "PTHR45794", "PTHR45794" ], [ "Q9NQU5-1", "protein_xref_panther", "PTHR45832:SF3", "PTHR45832:SF3" ], [ "H0YL14-1", "protein_xref_panther", "PTHR18884:SF108", "PTHR18884:SF108" ], [ "P31749-1", "protein_xref_panther", "PTHR24351:SF200", "PTHR24351:SF200" ], [ "O43399-1", "protein_xref_panther", "PTHR19307", "PTHR19307" ], [ "Q9Y2H2-1", "protein_xref_panther", "PTHR31792", "PTHR31792" ], [ "P36402-1", "protein_xref_panther", "PTHR10373", "PTHR10373" ], [ "P36402-1", "protein_xref_panther", "PTHR10373:SF33", "PTHR10373:SF33" ], [ "P06744-1", "protein_xref_panther", "PTHR11469", "PTHR11469" ], [ "Q96L93-1", "protein_xref_panther", "PTHR24115", "PTHR24115" ], [ "Q969W1-1", "protein_xref_panther", "PTHR12246", "PTHR12246" ], [ "Q86YW0-1", "protein_xref_panther", "PTHR10336", "PTHR10336" ], [ "Q86YW0-1", "protein_xref_panther", "PTHR10336:SF29", "PTHR10336:SF29" ], [ "P29353-1", "protein_xref_panther", "PTHR10337:SF2", "PTHR10337:SF2" ], [ "Q9BZG8-1", "protein_xref_panther", "PTHR10762", "PTHR10762" ], [ "Q6NUK4-1", "protein_xref_panther", "PTHR12300", "PTHR12300" ], [ "P00738-1", "protein_xref_panther", "PTHR24255:SF27", "PTHR24255:SF27" ], [ "Q8WWY8-1", "protein_xref_panther", "PTHR11610", "PTHR11610" ], [ "P01236-1", "protein_xref_panther", "PTHR11417", "PTHR11417" ], [ "Q04837-1", "protein_xref_panther", "PTHR10302", "PTHR10302" ], [ "Q8N865-1", "protein_xref_panther", "PTHR31393", "PTHR31393" ], [ "Q9UQB3-1", "protein_xref_panther", "PTHR10372", "PTHR10372" ], [ "P09001-1", "protein_xref_panther", "PTHR11229", "PTHR11229" ], [ "Q14568-1", "protein_xref_panther", "PTHR11528", "PTHR11528" ], [ "Q9H967-1", "protein_xref_panther", "PTHR14773:SF0", "PTHR14773:SF0" ], [ "Q14563-1", "protein_xref_panther", "PTHR11036", "PTHR11036" ], [ "Q14566-1", "protein_xref_panther", "PTHR11630", "PTHR11630" ], [ "P19440-1", "protein_xref_panther", "PTHR11686", "PTHR11686" ], [ "Q9NR90-1", "protein_xref_panther", "PTHR11176:SF8", "PTHR11176:SF8" ], [ "Q9NR90-1", "protein_xref_panther", "PTHR11176", "PTHR11176" ], [ "Q9Y265-1", "protein_xref_panther", "PTHR11093", "PTHR11093" ], [ "Q9Y265-1", "protein_xref_panther", "PTHR11093:SF6", "PTHR11093:SF6" ], [ "Q9Y547-1", "protein_xref_panther", "PTHR33906", "PTHR33906" ], [ "Q96BT3-1", "protein_xref_panther", "PTHR46904", "PTHR46904" ], [ "Q6ZMG9-1", "protein_xref_panther", "PTHR12560", "PTHR12560" ], [ "Q86VY4-1", "protein_xref_panther", "PTHR11875", "PTHR11875" ], [ "Q86VY9-1", "protein_xref_panther", "PTHR31815", "PTHR31815" ], [ "Q99569-1", "protein_xref_panther", "PTHR10372", "PTHR10372" ], [ "Q99569-1", "protein_xref_panther", "PTHR10372:SF8", "PTHR10372:SF8" ], [ "P41250-1", "protein_xref_panther", "PTHR10745", "PTHR10745" ], [ "O15078-1", "protein_xref_panther", "PTHR18879", "PTHR18879" ] ] }, "readme": "Name\n - Human UniProtKB Xref PANTHER\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-03-15T15:04:33.347577\n\nModified on\n - 2020-04-10T11:38:03.333354\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_panther.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_panther.csv\n Name: human_protein_xref_panther.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_panther.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_xref_panther.csv" }