{ "bcoid": "GLY_000115", "title": "Human UniProtKB Xref OrthoDB", "description": "The Human UniProtKB Xref OrthoDB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_orthodb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Orthodb cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q8NHX4-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_orthodb", "933620at2759", "" ], [ "Q8NHX4-1", "protein_xref_orthodb", "1513172at2759", "" ], [ "Q8NHX9-1", "protein_xref_orthodb", "761764at2759", "" ], [ "H3BTG2-1", "protein_xref_orthodb", "1553813at2759", "" ], [ "Q9C0H2-1", "protein_xref_orthodb", "725378at2759", "" ], [ "Q9C0H5-1", "protein_xref_orthodb", "1123653at2759", "" ], [ "Q9C0H6-1", "protein_xref_orthodb", "709680at2759", "" ], [ "Q9C0H9-5", "protein_xref_orthodb", "65773at2759", "" ], [ "Q96J65-1", "protein_xref_orthodb", "138195at2759", "" ], [ "Q8NC06-1", "protein_xref_orthodb", "1546859at2759", "" ], [ "Q8NBW4-1", "protein_xref_orthodb", "941044at2759", "" ], [ "Q9NYS7-1", "protein_xref_orthodb", "805365at2759", "" ], [ "P40424-1", "protein_xref_orthodb", "804740at2759", "" ], [ "P40425-1", "protein_xref_orthodb", "804740at2759", "" ], [ "P40429-1", "protein_xref_orthodb", "1312756at2759", "" ], [ "Q9H2I8-1", "protein_xref_orthodb", "1133053at2759", "" ], [ "P03891-1", "protein_xref_orthodb", "1153818at2759", "" ], [ "P03897-1", "protein_xref_orthodb", "575561at2759", "" ], [ "P02768-1", "protein_xref_orthodb", "1377476at2759", "" ], [ "P02760-1", "protein_xref_orthodb", "1090505at2759", "" ], [ "P02763-1", "protein_xref_orthodb", "1025450at2759", "" ], [ "P02765-1", "protein_xref_orthodb", "913381at2759", "" ], [ "P82921-1", "protein_xref_orthodb", "1512634at2759", "" ], [ "P02766-1", "protein_xref_orthodb", "720138at2759", "" ], [ "Q6E0U4-1", "protein_xref_orthodb", "917254at2759", "" ], [ "Q9P2J5-1", "protein_xref_orthodb", "75155at2759", "" ], [ "H0YL14-1", "protein_xref_orthodb", "1491213at2759", "" ], [ "Q9P2J8-1", "protein_xref_orthodb", "1318335at2759", "" ], [ "O43399-1", "protein_xref_orthodb", "1225782at2759", "" ], [ "Q5VVP1-1", "protein_xref_orthodb", "1095565at2759", "" ], [ "Q9BZG1-1", "protein_xref_orthodb", "1048146at2759", "" ], [ "Q9BZG2-1", "protein_xref_orthodb", "1221585at2759", "" ], [ "Q9BZG8-1", "protein_xref_orthodb", "750182at2759", "" ], [ "Q8N865-1", "protein_xref_orthodb", "1113879at2759", "" ], [ "Q9UQB3-1", "protein_xref_orthodb", "233858at2759", "" ], [ "Q6NX49-1", "protein_xref_orthodb", "1318335at2759", "" ], [ "P09001-1", "protein_xref_orthodb", "1269775at2759", "" ], [ "P53708-1", "protein_xref_orthodb", "743479at2759", "" ], [ "Q6NX45-1", "protein_xref_orthodb", "1318335at2759", "" ], [ "Q9H967-1", "protein_xref_orthodb", "753973at2759", "" ], [ "Q14563-1", "protein_xref_orthodb", "297290at2759", "" ], [ "Q14562-1", "protein_xref_orthodb", "354219at2759", "" ], [ "Q14566-1", "protein_xref_orthodb", "266497at2759", "" ], [ "Q14565-1", "protein_xref_orthodb", "877394at2759", "" ], [ "Q9Y265-1", "protein_xref_orthodb", "752343at2759", "" ], [ "A6NIR3-1", "protein_xref_orthodb", "751525at2759", "" ], [ "Q6ZMG9-1", "protein_xref_orthodb", "987268at2759", "" ], [ "Q86VY4-1", "protein_xref_orthodb", "1191764at2759", "" ], [ "Q86VY9-1", "protein_xref_orthodb", "564629at2759", "" ], [ "P19075-1", "protein_xref_orthodb", "1205716at2759", "" ], [ "O60729-1", "protein_xref_orthodb", "1357618at2759", "" ], [ "A6NCL1-1", "protein_xref_orthodb", "966768at2759", "" ], [ "Q8WUF5-1", "protein_xref_orthodb", "1041229at2759", "" ], [ "Q96BT7-1", "protein_xref_orthodb", "996085at2759", "" ], [ "Q96M96-1", "protein_xref_orthodb", "652460at2759", "" ], [ "Q99519-1", "protein_xref_orthodb", "652179at2759", "" ], [ "O15417-1", "protein_xref_orthodb", "11077at2759", "" ], [ "Q96RU3-1", "protein_xref_orthodb", "348563at2759", "" ], [ "Q96RU2-1", "protein_xref_orthodb", "194025at2759", "" ], [ "Q96RU8-1", "protein_xref_orthodb", "1362510at2759", "" ], [ "Q9ULV4-1", "protein_xref_orthodb", "552726at2759", "" ], [ "Q9Y5A7-1", "protein_xref_orthodb", "1339766at2759", "" ], [ "Q9Y5A6-1", "protein_xref_orthodb", "1318335at2759", "" ], [ "Q13643-1", "protein_xref_orthodb", "642235at2759", "" ], [ "Q13642-2", "protein_xref_orthodb", "642235at2759", "" ], [ "Q13641-1", "protein_xref_orthodb", "785938at2759", "" ], [ "Q9Y5A9-1", "protein_xref_orthodb", "1523251at2759", "" ], [ "Q02127-1", "protein_xref_orthodb", "1194348at2759", "" ], [ "Q6ZRV2-1", "protein_xref_orthodb", "84242at2759", "" ], [ "Q5T6X5-1", "protein_xref_orthodb", "119538at2759", "" ], [ "A8MZ59-2", "protein_xref_orthodb", "1417936at2759", "" ], [ "Q9Y3T6-1", "protein_xref_orthodb", "844916at2759", "" ], [ "P16520-1", "protein_xref_orthodb", "704786at2759", "" ], [ "Q8NCJ5-1", "protein_xref_orthodb", "1106989at2759", "" ], [ "Q9Y296-1", "protein_xref_orthodb", "1504863at2759", "" ], [ "Q9Y297-1", "protein_xref_orthodb", "666965at2759", "" ], [ "Q9Y295-1", "protein_xref_orthodb", "754662at2759", "" ], [ "Q6ICB4-1", "protein_xref_orthodb", "1329965at2759", "" ], [ "Q6ICB0-1", "protein_xref_orthodb", "1214552at2759", "" ], [ "P35070-1", "protein_xref_orthodb", "1401257at2759", "" ], [ "P61289-1", "protein_xref_orthodb", "1251022at2759", "" ], [ "O75420-1", "protein_xref_orthodb", "412069at2759", "" ], [ "O75425-1", "protein_xref_orthodb", "1197131at2759", "" ], [ "O75427-1", "protein_xref_orthodb", "378148at2759", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref OrthoDB\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-03-15T14:55:58.596936\n\nModified on\n - 2020-04-10T11:37:34.729582\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref OrthoDB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology.\n\nDescription Domain\n Keywords\n - orthologs\n - OrthoDB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_orthodb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_orthodb.csv\n Name: human_protein_xref_orthodb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_orthodb.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_xref_orthodb.csv" }