{ "bcoid": "GLY_000114", "title": "Mouse UniProtKB Xref OMA", "description": "The Mouse UniProtKB Xref OMA contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Oma cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_oma", "LMVLTFW", "" ], [ "Q8BH27-1", "protein_xref_oma", "HTSGLCL", "" ], [ "Q8BH26-1", "protein_xref_oma", "WVWATIF", "" ], [ "B2RXV4-1", "protein_xref_oma", "EKPQYPP", "" ], [ "P03899-1", "protein_xref_oma", "RFPVKYY", "" ], [ "Q9CWR0-1", "protein_xref_oma", "GRCACPH", "" ], [ "O35153-1", "protein_xref_oma", "IWASERW", "" ], [ "Q02853-1", "protein_xref_oma", "WTLGNHM", "" ], [ "P03893-1", "protein_xref_oma", "WVPEVTQ", "" ], [ "Q6DYE8-1", "protein_xref_oma", "WYLGQPI", "" ], [ "P36536-1", "protein_xref_oma", "IRPIEIF", "" ], [ "Q9R092-1", "protein_xref_oma", "DEAPMHI", "" ], [ "Q9QYH9-1", "protein_xref_oma", "ARAGYYY", "" ], [ "P52479-1", "protein_xref_oma", "FPQYIFG", "" ], [ "P02762-1", "protein_xref_oma", "YSQRWGN", "" ], [ "Q9QYH6-1", "protein_xref_oma", "AVCHPLP", "" ], [ "Q08AU7-1", "protein_xref_oma", "CTELCQL", "" ], [ "O35309-1", "protein_xref_oma", "GVRFQVH", "" ], [ "Q80YU0-1", "protein_xref_oma", "YPGSMFL", "" ], [ "Q61216-1", "protein_xref_oma", "QWMRPET", "" ], [ "Q5SRT8-1", "protein_xref_oma", "PAGCFDS", "" ], [ "P10852-1", "protein_xref_oma", "LHFPYVA", "" ], [ "P70419-1", "protein_xref_oma", "EYSAHHE", "" ], [ "Q9EP78-1", "protein_xref_oma", "ICSEPLC", "" ], [ "Q9EP79-1", "protein_xref_oma", "CIQILMA", "" ], [ "Q3URK3-1", "protein_xref_oma", "FHLKTES", "" ], [ "Q9EP72-1", "protein_xref_oma", "PYPLKMR", "" ], [ "Q9EP73-1", "protein_xref_oma", "CTFRRLG", "" ], [ "Q9EP71-1", "protein_xref_oma", "SHHECVK", "" ], [ "Q9EP75-1", "protein_xref_oma", "ECCTEMI", "" ], [ "Q8VF62-1", "protein_xref_oma", "NIMFITF", "" ], [ "Q8CHS4-1", "protein_xref_oma", "KYICTHP", "" ], [ "S4R213-1", "protein_xref_oma", "EYPCVLQ", "" ], [ "P53702-1", "protein_xref_oma", "YPSKFGT", "" ], [ "O08911-1", "protein_xref_oma", "PGRDYGH", "" ], [ "O08912-1", "protein_xref_oma", "VAEVWMC", "" ], [ "O08915-1", "protein_xref_oma", "WAMTDDE", "" ], [ "O08914-1", "protein_xref_oma", "MQPWKYD", "" ], [ "O08917-1", "protein_xref_oma", "QYDSEVK", "" ], [ "O08918-1", "protein_xref_oma", "CWDESES", "" ], [ "Q80WC1-1", "protein_xref_oma", "GELKCIS", "" ], [ "Q80WC7-1", "protein_xref_oma", "SDCKRNK", "" ], [ "Q9JHY4-1", "protein_xref_oma", "CCYYNCR", "" ], [ "Q9WTP3-1", "protein_xref_oma", "CFDMLLT", "" ], [ "Q8BYW1-1", "protein_xref_oma", "DVKPQGC", "" ], [ "Q8C0L9-1", "protein_xref_oma", "FNIEFKF", "" ], [ "Q8BTJ4-1", "protein_xref_oma", "KNCSSHM", "" ], [ "E9PYR1-1", "protein_xref_oma", "PNPAHWP", "" ], [ "P04760-1", "protein_xref_oma", "CVDACNL", "" ], [ "P59808-1", "protein_xref_oma", "VESWPRS", "" ], [ "F8VQK3-1", "protein_xref_oma", "QNWPNIH", "" ], [ "Q91UZ1-1", "protein_xref_oma", "PIKFQSF", "" ], [ "A2AT96-1", "protein_xref_oma", "MVYATTE", "" ], [ "Q9D387-1", "protein_xref_oma", "SEIHISW", "" ], [ "Q9D516-1", "protein_xref_oma", "ATQADGY", "" ], [ "Q9D517-1", "protein_xref_oma", "EQECANW", "" ], [ "Q9D513-1", "protein_xref_oma", "WGQRACV", "" ], [ "Q9D519-1", "protein_xref_oma", "SEIQIVC", "" ], [ "Q8K2M0-1", "protein_xref_oma", "NMREPVF", "" ], [ "P21661-1", "protein_xref_oma", "QQEGFNR", "" ], [ "O55087-1", "protein_xref_oma", "TLAPWQH", "" ], [ "P70331-1", "protein_xref_oma", "DMDCGIV", "" ], [ "F6ZPB0-1", "protein_xref_oma", "KKHCTMC", "" ], [ "Q9R210-1", "protein_xref_oma", "YMQQQRM", "" ], [ "Q8K2J4-1", "protein_xref_oma", "YSENRCN", "" ], [ "A0A0G2JEU8-1", "protein_xref_oma", "NMKESHS", "" ], [ "Q8CB67-1", "protein_xref_oma", "AINMKST", "" ], [ "Q80VU4-1", "protein_xref_oma", "TRCKAES", "" ], [ "Q8VC04-1", "protein_xref_oma", "NTYNICT", "" ], [ "P22727-1", "protein_xref_oma", "AVKLYMR", "" ], [ "Q8BGW1-1", "protein_xref_oma", "GKDFFTP", "" ], [ "Q8BGW0-1", "protein_xref_oma", "KVPVGCQ", "" ], [ "Q8BGW3-1", "protein_xref_oma", "GGEHTSD", "" ], [ "Q8BGW2-1", "protein_xref_oma", "PQDKETC", "" ], [ "Q8BGW4-1", "protein_xref_oma", "ALWQVDP", "" ], [ "Q8BGW6-1", "protein_xref_oma", "QSFEGSH", "" ], [ "Q8BGW9-1", "protein_xref_oma", "LVHKTPG", "" ], [ "Q8BGW8-1", "protein_xref_oma", "IGLNMDT", "" ], [ "Q497P3-1", "protein_xref_oma", "HYDQYDY", "" ], [ "Q91YJ5-1", "protein_xref_oma", "AYPVWTA", "" ], [ "A0A1B0GSZ2-1", "protein_xref_oma", "YRPVNIL", "" ], [ "Q8R1N3-1", "protein_xref_oma", "SFRRETI", "" ], [ "A2AAE1-1", "protein_xref_oma", "WKNVLYT", "" ], [ "Q3TNL8-1", "protein_xref_oma", "LPEGACH", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref OMA\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T12:40:33.108688\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref OMA contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_oma.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_oma.csv\n Name: mouse_protein_xref_oma.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_oma.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/mouse_protein_xref_oma.csv" }