{ "bcoid": "GLY_000099", "title": "Human UniProtKB Xref ChEMBL", "description": "The Human UniprotKB Xref ChEMBL contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_chembl.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Chembl cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "P23919-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_chembl", "CHEMBL1075126", "" ], [ "P23919-1", "protein_xref_chembl", "CHEMBL4388", "" ], [ "Q9C0H9-5", "protein_xref_chembl", "CHEMBL2150836", "" ], [ "Q96J66-1", "protein_xref_chembl", "CHEMBL2073702", "" ], [ "P03891-1", "protein_xref_chembl", "CHEMBL2363065", "" ], [ "P03897-1", "protein_xref_chembl", "CHEMBL2363065", "" ], [ "P02768-1", "protein_xref_chembl", "CHEMBL3253", "" ], [ "P02763-1", "protein_xref_chembl", "CHEMBL4285", "" ], [ "P02765-1", "protein_xref_chembl", "CHEMBL4295694", "" ], [ "P02766-1", "protein_xref_chembl", "CHEMBL3194", "" ], [ "Q9P2J5-1", "protein_xref_chembl", "CHEMBL3258", "" ], [ "Q14566-1", "protein_xref_chembl", "CHEMBL4296011", "" ], [ "Q99519-1", "protein_xref_chembl", "CHEMBL2726", "" ], [ "Q96RU2-1", "protein_xref_chembl", "CHEMBL2157853", "" ], [ "Q96RU8-1", "protein_xref_chembl", "CHEMBL4524042", "" ], [ "Q13641-1", "protein_xref_chembl", "CHEMBL3712934", "" ], [ "Q9Y5A9-1", "protein_xref_chembl", "CHEMBL4295992", "" ], [ "Q02127-1", "protein_xref_chembl", "CHEMBL1966", "" ], [ "Q5T6X5-1", "protein_xref_chembl", "CHEMBL4523873", "" ], [ "Q9Y294-1", "protein_xref_chembl", "CHEMBL3392950", "" ], [ "P61289-1", "protein_xref_chembl", "CHEMBL4296023", "" ], [ "Q99619-1", "protein_xref_chembl", "CHEMBL3325308", "" ], [ "O00505-1", "protein_xref_chembl", "CHEMBL4523119", "" ], [ "Q8IYD1-1", "protein_xref_chembl", "CHEMBL4105974", "" ], [ "Q9UI09-1", "protein_xref_chembl", "CHEMBL2363065", "" ], [ "P24903-1", "protein_xref_chembl", "CHEMBL4523986", "" ], [ "P37088-1", "protein_xref_chembl", "CHEMBL1791", "" ], [ "Q00975-1", "protein_xref_chembl", "CHEMBL4478", "" ], [ "Q96RJ0-1", "protein_xref_chembl", "CHEMBL5857", "" ], [ "Q9UKX5-1", "protein_xref_chembl", "CHEMBL5883", "" ], [ "Q9UKX2-1", "protein_xref_chembl", "CHEMBL4295980", "" ], [ "P45983-1", "protein_xref_chembl", "CHEMBL2276", "" ], [ "Q9HB55-1", "protein_xref_chembl", "CHEMBL5792", "" ], [ "Q9UEF7-1", "protein_xref_chembl", "CHEMBL4523485", "" ], [ "Q9H237-1", "protein_xref_chembl", "CHEMBL1255163", "" ], [ "Q8WUI4-1", "protein_xref_chembl", "CHEMBL2716", "" ], [ "Q9NQB0-1", "protein_xref_chembl", "CHEMBL3038511", "" ], [ "O14578-1", "protein_xref_chembl", "CHEMBL5579", "" ], [ "Q9Y315-1", "protein_xref_chembl", "CHEMBL4295988", "" ], [ "P43003-1", "protein_xref_chembl", "CHEMBL3085", "" ], [ "P43007-1", "protein_xref_chembl", "CHEMBL2315", "" ], [ "P43005-1", "protein_xref_chembl", "CHEMBL2721", "" ], [ "P43004-1", "protein_xref_chembl", "CHEMBL4973", "" ], [ "Q9NPI8-1", "protein_xref_chembl", "CHEMBL2157856", "" ], [ "Q9NPI1-1", "protein_xref_chembl", "CHEMBL3085622", "" ], [ "Q05397-1", "protein_xref_chembl", "CHEMBL2695", "" ], [ "Q14249-1", "protein_xref_chembl", "CHEMBL3804749", "" ], [ "Q14247-1", "protein_xref_chembl", "CHEMBL4295820", "" ], [ "Q14242-1", "protein_xref_chembl", "CHEMBL4183", "" ], [ "Q14240-1", "protein_xref_chembl", "CHEMBL4105952", "" ], [ "P29120-1", "protein_xref_chembl", "CHEMBL3182", "" ], [ "Q86VH2-1", "protein_xref_chembl", "CHEMBL3879867", "" ], [ "P16298-1", "protein_xref_chembl", "CHEMBL5278", "" ], [ "P29122-1", "protein_xref_chembl", "CHEMBL2951", "" ], [ "Q13564-1", "protein_xref_chembl", "CHEMBL2016431", "" ], [ "Q13563-1", "protein_xref_chembl", "CHEMBL5465", "" ], [ "Q8NE63-1", "protein_xref_chembl", "CHEMBL1075167", "" ], [ "O00204-1", "protein_xref_chembl", "CHEMBL1743297", "" ], [ "O00206-1", "protein_xref_chembl", "CHEMBL5255", "" ], [ "Q6P1M0-1", "protein_xref_chembl", "CHEMBL4327", "" ], [ "O43598-1", "protein_xref_chembl", "CHEMBL3351218", "" ], [ "O43592-1", "protein_xref_chembl", "CHEMBL4105803", "" ], [ "Q86X55-3", "protein_xref_chembl", "CHEMBL5406", "" ], [ "Q6P988-1", "protein_xref_chembl", "CHEMBL3714531", "" ], [ "Q99518-1", "protein_xref_chembl", "CHEMBL3542432", "" ], [ "O60583-1", "protein_xref_chembl", "CHEMBL4523631", "" ], [ "P01042-1", "protein_xref_chembl", "CHEMBL3638337", "" ], [ "O00590-1", "protein_xref_chembl", "CHEMBL4105988", "" ], [ "P09693-1", "protein_xref_chembl", "CHEMBL2364168", "" ], [ "Q9P1Z3-1", "protein_xref_chembl", "CHEMBL1795173", "" ], [ "O60894-1", "protein_xref_chembl", "CHEMBL2107838", "" ], [ "O60894-1", "protein_xref_chembl", "CHEMBL2111189", "" ], [ "O60895-1", "protein_xref_chembl", "CHEMBL2364173", "" ], [ "O60895-1", "protein_xref_chembl", "CHEMBL2109232", "" ], [ "P42229-1", "protein_xref_chembl", "CHEMBL5403", "" ], [ "Q99788-1", "protein_xref_chembl", "CHEMBL3540", "" ], [ "P42224-1", "protein_xref_chembl", "CHEMBL6101", "" ], [ "P42226-1", "protein_xref_chembl", "CHEMBL5401", "" ], [ "P19404-1", "protein_xref_chembl", "CHEMBL2363065", "" ], [ "O14976-1", "protein_xref_chembl", "CHEMBL4355", "" ], [ "O14975-1", "protein_xref_chembl", "CHEMBL4326", "" ], [ "P15313-1", "protein_xref_chembl", "CHEMBL3217", "" ], [ "Q02880-1", "protein_xref_chembl", "CHEMBL3396", "" ], [ "P21757-1", "protein_xref_chembl", "CHEMBL5811", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref ChEMBL\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-03-15T12:09:44.596916\n\nModified on\n - 2020-04-10T11:33:38.480380\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniprotKB Xref ChEMBL contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to ChEMBL database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - ChEMBL or ChEMBLdb is a manually curated chemical database of bioactive molecules with drug-like properties.\n\nDescription Domain\n Keywords\n - bioactivity\n - ChEMBL\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to ChEMBL database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_chembl.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_chembl.csv\n Name: human_protein_xref_chembl.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_chembl.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_xref_chembl.csv" }