{ "bcoid": "GLY_000090", "title": "Human UniProtKB Xref Bgee", "description": "The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_bgee.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Bgee", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O75818-1...", "protein_xref..." ], [ "Q14697-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "O75818-1", "protein_xref_bgee", "ENSG00000124787", "Expressed in left adrenal gland and 208 other tissues" ], [ "Q14697-1", "protein_xref_bgee", "ENSG00000089597", "Expressed in stromal cell of endometrium and 246 other tissues" ], [ "P30613-1", "protein_xref_bgee", "ENSG00000143627", "Expressed in liver and 139 other tissues" ], [ "Q8TEU7-1", "protein_xref_bgee", "ENSG00000158987", "Expressed in corpus callosum and 219 other tissues" ], [ "Q92994-1", "protein_xref_bgee", "ENSG00000185024", "Expressed in sural nerve and 184 other tissues" ], [ "P23769-1", "protein_xref_bgee", "ENSG00000179348", "Expressed in endometrium and 234 other tissues" ], [ "O75962-1", "protein_xref_bgee", "ENSG00000038382", "Expressed in stomach and 233 other tissues" ], [ "P23919-1", "protein_xref_bgee", "ENSG00000168393", "Expressed in ventricular zone and 191 other tissues" ], [ "Q8NHX4-1", "protein_xref_bgee", "ENSG00000173699", "Expressed in testis and 94 other tissues" ], [ "Q8NHX9-1", "protein_xref_bgee", "ENSG00000162341", "Expressed in amniotic fluid and 198 other tissues" ], [ "H3BTG2-1", "protein_xref_bgee", "ENSG00000227868", "Expressed in left testis and 103 other tissues" ], [ "Q92614-1", "protein_xref_bgee", "ENSG00000196535", "Expressed in gastrocnemius and 118 other tissues" ], [ "P10242-1", "protein_xref_bgee", "ENSG00000118513", "Expressed in oviduct epithelium and 147 other tissues" ], [ "Q9GZW8-1", "protein_xref_bgee", "ENSG00000166927", "Expressed in spleen and 170 other tissues" ], [ "Q9C0H2-1", "protein_xref_bgee", "ENSG00000136295", "Expressed in ventricular zone and 182 other tissues" ], [ "Q9C0H5-1", "protein_xref_bgee", "ENSG00000147799", "Expressed in sural nerve and 163 other tissues" ], [ "Q9C0H6-1", "protein_xref_bgee", "ENSG00000102271", "Expressed in corpus callosum and 129 other tissues" ], [ "Q9C0H9-5", "protein_xref_bgee", "ENSG00000277363", "Expressed in cerebellar vermis and 151 other tissues" ], [ "Q8N6H7-1", "protein_xref_bgee", "ENSG00000149182", "Expressed in stomach and 239 other tissues" ], [ "Q96J66-1", "protein_xref_bgee", "ENSG00000121270", "Expressed in sural nerve and 89 other tissues" ], [ "Q9BTE7-1", "protein_xref_bgee", "ENSG00000137692", "Expressed in secondary oocyte and 217 other tissues" ], [ "Q96J65-1", "protein_xref_bgee", "ENSG00000140798", "Expressed in testis and 59 other tissues" ], [ "P25705-1", "protein_xref_bgee", "ENSG00000152234", "Expressed in parietal pleura and 253 other tissues" ], [ "Q6UW68-1", "protein_xref_bgee", "ENSG00000105518", "Expressed in right lobe of liver and 212 other tissues" ], [ "Q9BUZ4-1", "protein_xref_bgee", "ENSG00000076604", "Expressed in adult mammalian kidney and 221 other tissues" ], [ "Q8NC06-1", "protein_xref_bgee", "ENSG00000181513", "Expressed in right lobe of liver and 172 other tissues" ], [ "Q8IYT4-1", "protein_xref_bgee", "ENSG00000167216", "Expressed in sural nerve and 143 other tissues" ], [ "P10242-1", "protein_xref_bgee", "ENSG00000118513", "Expressed in oviduct epithelium and 147 other tissues" ], [ "A6NC51-1", "protein_xref_bgee", "ENSG00000180061", "Expressed in duodenum and 108 other tissues" ], [ "Q13829-1", "protein_xref_bgee", "ENSG00000109079", "Expressed in right lobe of liver and 246 other tissues" ], [ "Q8NBW4-1", "protein_xref_bgee", "ENSG00000177058", "Expressed in secondary oocyte and 200 other tissues" ], [ "Q9NYS7-1", "protein_xref_bgee", "ENSG00000176871", "Expressed in dorsolateral prefrontal cortex and 250 other tissues" ], [ "P40424-1", "protein_xref_bgee", "ENSG00000185630", "Expressed in endocervix and 249 other tissues" ], [ "P40425-1", "protein_xref_bgee", "ENSG00000204304", "Expressed in left lobe of thyroid gland and 233 other tissues" ], [ "P40426-1", "protein_xref_bgee", "ENSG00000167081", "Expressed in intestine and 224 other tissues" ], [ "P40429-1", "protein_xref_bgee", "ENSG00000142541", "Expressed in left ovary and 113 other tissues" ], [ "Q9H2I8-1", "protein_xref_bgee", "ENSG00000148655", "Expressed in muscle tissue and 188 other tissues" ], [ "P03891-1", "protein_xref_bgee", "ENSG00000198763", "Expressed in left adrenal gland and 114 other tissues" ], [ "Q15326-1", "protein_xref_bgee", "ENSG00000015171", "Expressed in cauda epididymis and 264 other tissues" ], [ "Q9H079-1", "protein_xref_bgee", "ENSG00000134152", "Expressed in placenta and 228 other tissues" ], [ "P03897-1", "protein_xref_bgee", "ENSG00000198840", "Expressed in muscle layer of sigmoid colon and 118 other tissues" ], [ "P02768-1", "protein_xref_bgee", "ENSG00000163631", "Expressed in right lobe of liver and 133 other tissues" ], [ "P02760-1", "protein_xref_bgee", "ENSG00000106927", "Expressed in liver and 114 other tissues" ], [ "P02763-1", "protein_xref_bgee", "ENSG00000229314", "Expressed in liver and 115 other tissues" ], [ "P02765-1", "protein_xref_bgee", "ENSG00000145192", "Expressed in liver and 133 other tissues" ], [ "P82921-1", "protein_xref_bgee", "ENSG00000266472", "Expressed in metanephros and 225 other tissues" ], [ "Q9Y228-1", "protein_xref_bgee", "ENSG00000009790", "Expressed in granulocyte and 172 other tissues" ], [ "P02766-1", "protein_xref_bgee", "ENSG00000118271", "Expressed in pigmented layer of retina and 148 other tissues" ], [ "Q9H6T0-1", "protein_xref_bgee", "ENSG00000103067", "Expressed in lower esophagus mucosa and 184 other tissues" ], [ "O95208-1", "protein_xref_bgee", "ENSG00000072134", "Expressed in corpus callosum and 236 other tissues" ], [ "Q4G0P3-1", "protein_xref_bgee", "ENSG00000157423", "Expressed in bronchial epithelial cell and 149 other tissues" ], [ "P43146-1", "protein_xref_bgee", "ENSG00000187323", "Expressed in forebrain and 115 other tissues" ], [ "Q86W25-1", "protein_xref_bgee", "ENSG00000173572", "Expressed in oocyte and 10 other tissues" ], [ "Q9Y2T1-1", "protein_xref_bgee", "ENSG00000168646", "Expressed in female gonad and 188 other tissues" ], [ "Q9BTE0-1", "protein_xref_bgee", "ENSG00000109065", "Expressed in left adrenal gland and 232 other tissues" ], [ "P49640-1", "protein_xref_bgee", "ENSG00000106038", "Expressed in lymph node and 180 other tissues" ], [ "Q6E0U4-1", "protein_xref_bgee", "ENSG00000161249", "Expressed in skin of leg and 164 other tissues" ], [ "Q96Q35-1", "protein_xref_bgee", "ENSG00000155749", "Expressed in testis and 129 other tissues" ], [ "P49789-1", "protein_xref_bgee", "ENSG00000189283", "Expressed in pigmented layer of retina and 150 other tissues" ], [ "Q9P2J5-1", "protein_xref_bgee", "ENSG00000133706", "Expressed in kidney and 237 other tissues" ], [ "P13804-1", "protein_xref_bgee", "ENSG00000140374", "Expressed in oocyte and 246 other tissues" ], [ "Q5ZPR3-1", "protein_xref_bgee", "ENSG00000103855", "Expressed in stromal cell of endometrium and 201 other tissues" ], [ "Q9NQU5-1", "protein_xref_bgee", "ENSG00000137843", "Expressed in prefrontal cortex and 119 other tissues" ], [ "H0YL14-1", "protein_xref_bgee", "ENSG00000238227", "Expressed in stomach and 197 other tissues" ], [ "Q9BVP2-1", "protein_xref_bgee", "ENSG00000163938", "Expressed in urinary bladder and 237 other tissues" ], [ "Q9GZS3-1", "protein_xref_bgee", "ENSG00000140395", "Expressed in pituitary gland and 241 other tissues" ], [ "Q9HBL0-1", "protein_xref_bgee", "ENSG00000079308", "Expressed in blood vessel layer and 255 other tissues" ], [ "P31749-1", "protein_xref_bgee", "ENSG00000142208", "Expressed in left adrenal gland and 233 other tissues" ], [ "Q9P2J8-1", "protein_xref_bgee", "ENSG00000197566", "Expressed in sural nerve and 190 other tissues" ], [ "O43399-1", "protein_xref_bgee", "ENSG00000101150", "Expressed in blood and 240 other tissues" ], [ "Q9Y2H2-1", "protein_xref_bgee", "ENSG00000198825", "Expressed in pons and 239 other tissues" ], [ "P36402-1", "protein_xref_bgee", "ENSG00000081059", "Expressed in thymus and 249 other tissues" ], [ "Q96L93-1", "protein_xref_bgee", "ENSG00000089177", "Expressed in sural nerve and 221 other tissues" ], [ "Q969W1-1", "protein_xref_bgee", "ENSG00000171307", "Expressed in parotid gland and 213 other tissues" ], [ "Q9Y2Q1-1", "protein_xref_bgee", "ENSG00000197134", "Expressed in testis and 125 other tissues" ], [ "Q86YW0-1", "protein_xref_bgee", "ENSG00000139151", "Expressed in sperm and 86 other tissues" ], [ "P29353-1", "protein_xref_bgee", "ENSG00000160691", "Expressed in left coronary artery and 246 other tissues" ], [ "Q5VVP1-1", "protein_xref_bgee", "ENSG00000185775", "Expressed in right testis and 9 other tissues" ], [ "Q86SE5-1", "protein_xref_bgee", "ENSG00000184672", "Expressed in frontal cortex and 143 other tissues" ], [ "Q9BZG1-1", "protein_xref_bgee", "ENSG00000109113", "Expressed in metanephros and 207 other tissues" ], [ "Q9BZG2-1", "protein_xref_bgee", "ENSG00000142513", "Expressed in amniotic fluid and 125 other tissues" ], [ "Q9BZG8-1", "protein_xref_bgee", "ENSG00000108963", "Expressed in pituitary gland and 114 other tissues" ], [ "Q6NUK4-1", "protein_xref_bgee", "ENSG00000165476", "Expressed in epithelial cell of pancreas and 225 other tissues" ], [ "P00738-1", "protein_xref_bgee", "ENSG00000257017", "Expressed in liver and 219 other tissues" ] ] }, "readme": "Name\n - Human UniProtKB Xref Bgee\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T11:31:45.477452\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n Keywords\n - gene expression\n - Bgee\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_bgee.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_bgee.csv\n Name: human_protein_xref_bgee.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_bgee.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_xref_bgee.csv" }