{ "bcoid": "GLY_000087", "title": "Human Protein Recommended Names (UniProtKB)", "description": "The Human Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for human ...", "filename": "human_protein_recnames.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Recommended Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "Pyruvate kin..." ], [ "A0A1W2PQ27-1...", "RNA polymera..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "P30613-1", "Pyruvate kinase PKLR", "", "2.7.1.40" ], [ "A0A1W2PQ27-1", "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "", "3.1.3.16" ], [ "O75962-1", "Non-specific serine/threonine protein kinase", "", "2.7.11.1" ], [ "P23919-1", "Thymidylate kinase", "", "2.7.4.9" ], [ "Q8NHX4-1", "Spermatogenesis-associated protein 3", "", "" ], [ "Q8NHX9-1", "Two pore calcium channel protein 2", "", "" ], [ "H3BTG2-1", "Testis-expressed protein 46", "", "" ], [ "Q9C0H2-1", "Protein tweety homolog 3", "hTTY3", "" ], [ "Q9C0H5-1", "Rho GTPase-activating protein 39", "", "" ], [ "Q9C0H6-1", "Kelch-like protein 4", "", "" ], [ "Q9C0H9-5", "SRC kinase signaling inhibitor 1", "", "" ], [ "Q96J66-1", "ATP-binding cassette sub-family C member 11", "", "7.6.2.2" ], [ "Q96J66-1", "ATP-binding cassette sub-family C member 11", "", "7.6.2.3" ], [ "Q9BTE7-1", "DCN1-like protein", "", "" ], [ "Q96J65-1", "ATP-binding cassette sub-family C member 12", "", "" ], [ "Q9NYS7-1", "WD repeat and SOCS box-containing protein 2", "WSB-2", "" ], [ "P40424-1", "Pre-B-cell leukemia transcription factor 1", "", "" ], [ "P40425-1", "Pre-B-cell leukemia transcription factor 2", "", "" ], [ "P40426-1", "Pre-B-cell leukemia transcription factor 3", "", "" ], [ "P40429-1", "60S ribosomal protein L13a", "", "" ], [ "Q9H2I8-1", "Leucine-rich melanocyte differentiation-associated protein", "", "" ], [ "P03891-1", "NADH-ubiquinone oxidoreductase chain 2", "", "7.1.1.2" ], [ "P03897-1", "NADH-ubiquinone oxidoreductase chain 3", "", "7.1.1.2" ], [ "P02768-1", "Albumin", "", "" ], [ "Q9Y237-1", "Peptidylprolyl isomerase", "", "5.2.1.8" ], [ "P02760-1", "Protein AMBP", "", "" ], [ "P02763-1", "Alpha-1-acid glycoprotein 1", "AGP 1", "" ], [ "P02765-1", "Alpha-2-HS-glycoprotein", "", "" ], [ "P82921-1", "28S ribosomal protein S21, mitochondrial", "MRP-S21", "" ], [ "P82921-1", "28S ribosomal protein S21, mitochondrial", "S21mt", "" ], [ "P02766-1", "Transthyretin", "", "" ], [ "A0A494C086-1", "Putative speedy protein E21", "", "" ], [ "Q9P2J5-1", "Leucine--tRNA ligase, cytoplasmic", "", "6.1.1.4" ], [ "Q9NQU5-1", "Non-specific serine/threonine protein kinase", "", "2.7.11.1" ], [ "H0YL14-1", "Transmembrane protein 250", "", "" ], [ "Q9P2J8-1", "Zinc finger protein 624", "", "" ], [ "O43399-1", "Tumor protein D54", "hD54", "" ], [ "Q9BXR3-1", "Endogenous retrovirus group K member 6 Env polyprotein", "", "" ], [ "Q9BXR3-1", "Endogenous retrovirus group K member 6 Rec protein", "", "" ], [ "Q969W1-1", "Palmitoyltransferase", "", "2.3.1.225" ], [ "Q86YW0-1", "Phosphoinositide phospholipase C", "", "3.1.4.11" ], [ "Q5VVP1-1", "Spermatogenesis-associated protein 31A6", "", "" ], [ "Q9BZG1-1", "Ras-related protein Rab-34", "", "" ], [ "Q9BZG2-1", "Testicular acid phosphatase", "", "3.1.3.2" ], [ "Q9BZG8-1", "2-(3-amino-3-carboxypropyl)histidine synthase subunit 1", "", "2.5.1.108" ], [ "Q6NUK4-1", "Receptor expression-enhancing protein 3", "", "" ], [ "P01236-1", "Prolactin", "PRL", "" ], [ "Q04837-1", "Single-stranded DNA-binding protein, mitochondrial", "", "" ], [ "Q8N865-1", "Uncharacterized protein C7orf31", "", "" ], [ "Q6NX49-1", "Zinc finger protein 544", "", "" ], [ "P09001-1", "39S ribosomal protein L3, mitochondrial", "L3mt", "" ], [ "P09001-1", "39S ribosomal protein L3, mitochondrial", "MRP-L3", "" ], [ "P53708-1", "Integrin alpha-8", "", "" ], [ "Q6NX45-1", "Zinc finger protein 774", "", "" ], [ "Q9H963-1", "Putative zinc finger protein 702", "", "" ], [ "Q14568-1", "Heat shock protein HSP 90-alpha A2", "", "" ], [ "Q9H967-1", "WD repeat-containing protein 76", "", "" ], [ "Q14563-1", "Semaphorin-3A", "", "" ], [ "Q14562-1", "ATP-dependent RNA helicase DHX8", "", "3.6.4.13" ], [ "Q14566-1", "DNA replication licensing factor MCM6", "", "3.6.4.12" ], [ "Q14565-1", "Meiotic recombination protein DMC1/LIM15 homolog", "", "" ], [ "Q9Y265-1", "RuvB-like helicase", "", "3.6.4.12" ], [ "A6NIR3-1", "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5", "AGAP-5", "" ], [ "Q6ZMG9-1", "Ceramide synthase 6", "CerS6", "2.3.1.-" ], [ "Q86VY4-1", "Testis-specific Y-encoded-like protein 5", "TSPY-like protein 5", "" ], [ "Q86VY9-1", "Transmembrane protein 200A", "", "" ], [ "Q15046-1", "Lysyl-tRNA synthetase", "", "" ], [ "P41250-1", "Diadenosine tetraphosphate synthetase", "", "6.1.1.14" ], [ "P01215-1", "Glycoprotein hormones alpha chain", "", "" ], [ "P19075-1", "Tetraspanin-8", "Tspan-8", "" ], [ "Q7L592-1", "Protein arginine methyltransferase NDUFAF7", "", "2.1.1.320" ], [ "O60729-1", "Dual specificity protein phosphatase CDC14B", "", "3.1.3.48" ], [ "O60729-1", "Dual specificity protein phosphatase CDC14B", "", "3.1.3.16" ], [ "Q6ZT12-1", "E3 ubiquitin-protein ligase", "", "2.3.2.27" ], [ "A6NCL1-1", "Geminin coiled-coil domain-containing protein 1", "", "" ], [ "Q8WUF8-1", "Cotranscriptional regulator FAM172A", "", "" ], [ "Q9NQ48-1", "Leucine zipper transcription factor-like protein 1", "", "" ], [ "Q96BT1-1", "Putative uncharacterized protein C3orf49", "", "" ], [ "Q8WUF5-1", "RelA-associated inhibitor", "", "" ], [ "Q96BT3-1", "Centromere protein T", "CENP-T", "" ], [ "Q96BT7-1", "Alkylated DNA repair protein alkB homolog 8", "", "" ], [ "Q2M2Z5-1", "Centrosomal protein kizuna", "", "" ], [ "Q99519-1", "Sialidase-1", "", "3.2.1.18" ], [ "O15417-1", "Trinucleotide repeat-containing gene 18 protein", "", "" ] ] }, "readme": "Name\n - Human Protein Recommended Names (UniProtKB)\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-01-23T17:21:05.956673\n\nModified on\n - 2020-04-10T11:30:02.137726\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for human [taxid:9606] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.10.6/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_recnames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_recnames.csv\n Name: human_protein_recnames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_recnames.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_recnames.csv" }