{ "bcoid": "GLY_000033", "title": "Human Protein Information (UniProtKB)", "description": "The Human Protein Information dataset contains human [taxid:9606] UniProtKB canonical accessions with ...", "filename": "human_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9H422-1...", "HIPK3_HUMAN..." ], [ "P24387-1...", "CRHBP_HUMAN..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "Q9H422-1", "HIPK3_HUMAN", "133743", "1215" ], [ "P24387-1", "CRHBP_HUMAN", "36144", "322" ], [ "Q9NQV6-3", "PRD10_HUMAN", "130136", "1147" ], [ "Q9BZW8-1", "CD244_HUMAN", "41616", "370" ], [ "O14519-1", "CDKA1_HUMAN", "12365", "115" ], [ "Q9HB96-1", "FANCE_HUMAN", "58711", "536" ], [ "P49771-1", "FLT3L_HUMAN", "26416", "235" ], [ "P35251-1", "RFC1_HUMAN", "128255", "1148" ], [ "P09430-1", "STP1_HUMAN", "6424", "55" ], [ "A0A2R8YCJ5-1", "SIM41_HUMAN", "9345", "93" ], [ "Q6UVK1-1", "CSPG4_HUMAN", "250537", "2322" ], [ "H7C350-1", "CC188_HUMAN", "43548", "402" ], [ "Q30KQ1-1", "DB133_HUMAN", "7213", "61" ], [ "Q8N239-1", "KLH34_HUMAN", "70612", "644" ], [ "A6NNY8-1", "UBP27_HUMAN", "49630", "438" ], [ "P51684-1", "CCR6_HUMAN", "42494", "374" ], [ "Q07001-1", "ACHD_HUMAN", "58895", "517" ], [ "Q8N6N7-1", "ACBD7_HUMAN", "9790", "88" ], [ "Q9H607-1", "OCEL1_HUMAN", "29404", "264" ], [ "P61009-1", "SPCS3_HUMAN", "20313", "180" ], [ "Q07654-1", "TFF3_HUMAN", "10181", "94" ], [ "P20585-1", "MSH3_HUMAN", "127412", "1137" ], [ "Q9NT22-1", "EMIL3_HUMAN", "82647", "766" ], [ "A0FGR9-1", "ESYT3_HUMAN", "100035", "886" ], [ "P01258-1", "CALC_HUMAN", "15467", "141" ], [ "Q96SF2-1", "TCPQM_HUMAN", "59388", "557" ], [ "Q8WUY1-1", "THEM6_HUMAN", "23865", "208" ], [ "Q3SXP7-1", "SHSL1_HUMAN", "22573", "199" ], [ "Q9Y6Q5-1", "AP1M2_HUMAN", "48108", "423" ], [ "Q96CU9-1", "FXRD1_HUMAN", "53812", "486" ], [ "Q8NGF1-1", "O52R1_HUMAN", "34943", "315" ], [ "Q13733-1", "AT1A4_HUMAN", "114166", "1029" ], [ "O75600-1", "KBL_HUMAN", "45285", "419" ], [ "Q8N831-1", "TSYL6_HUMAN", "45874", "410" ], [ "A6NGU5-1", "GGT3_HUMAN", "61502", "568" ], [ "A4IF30-1", "S35F4_HUMAN", "57809", "521" ], [ "P09601-1", "HMOX1_HUMAN", "32819", "288" ], [ "Q9NPH0-1", "PPA6_HUMAN", "48886", "428" ], [ "Q9UQB3-1", "CTND2_HUMAN", "132656", "1225" ], [ "Q13956-1", "CNCG_HUMAN", "9074", "83" ], [ "Q2T9J0-1", "TYSD1_HUMAN", "59309", "566" ], [ "Q9NY97-1", "B3GN2_HUMAN", "46022", "397" ], [ "P0C843-1", "CI014_HUMAN", "12082", "101" ], [ "Q9Y3N9-1", "OR2W1_HUMAN", "36101", "320" ], [ "Q5GAN6-1", "RNS10_HUMAN", "24008", "216" ], [ "P17030-1", "ZNF25_HUMAN", "53545", "456" ], [ "Q9BXI2-1", "ORNT2_HUMAN", "32580", "301" ], [ "A0PJE2-1", "DHR12_HUMAN", "35146", "317" ], [ "Q5VY09-1", "IER5_HUMAN", "33704", "327" ], [ "P0C6C1-1", "AN34C_HUMAN", "58256", "535" ], [ "Q86YR5-1", "GPSM1_HUMAN", "74510", "675" ], [ "P36575-1", "ARRC_HUMAN", "42778", "388" ], [ "Q969J2-1", "ZKSC4_HUMAN", "61579", "545" ], [ "Q5VVC0-1", "SPO16_HUMAN", "20418", "180" ], [ "P43631-1", "KI2S2_HUMAN", "33502", "304" ], [ "O76009-1", "KT33A_HUMAN", "45940", "404" ], [ "P60413-1", "KR10C_HUMAN", "25107", "245" ], [ "O60431-1", "OR1I1_HUMAN", "39297", "355" ], [ "P0CG42-1", "F157B_HUMAN", "43129", "384" ], [ "Q70EK8-1", "UBP53_HUMAN", "120806", "1073" ], [ "P78386-1", "KRT85_HUMAN", "55802", "507" ], [ "Q8WWF8-1", "CAPSL_HUMAN", "24229", "208" ], [ "Q14156-1", "EFR3A_HUMAN", "92924", "821" ], [ "Q9UK55-1", "ZPI_HUMAN", "50707", "444" ], [ "Q5VXM1-1", "CDCP2_HUMAN", "48752", "449" ], [ "Q9BRA2-1", "TXD17_HUMAN", "13941", "123" ], [ "P78560-1", "CRADD_HUMAN", "22745", "199" ], [ "Q16585-1", "SGCB_HUMAN", "34777", "318" ], [ "Q9H0M0-1", "WWP1_HUMAN", "105202", "922" ], [ "P35659-1", "DEK_HUMAN", "42674", "375" ], [ "P15812-1", "CD1E_HUMAN", "43626", "388" ], [ "Q9GZN0-1", "GPR88_HUMAN", "40246", "384" ], [ "Q8NHS3-1", "MFSD8_HUMAN", "57628", "518" ], [ "Q8TEJ3-1", "SH3R3_HUMAN", "92776", "882" ], [ "A0PK00-1", "T120B_HUMAN", "40246", "339" ], [ "Q8WUN7-1", "UBTD2_HUMAN", "26190", "234" ], [ "P55916-1", "UCP3_HUMAN", "34216", "312" ], [ "Q8IWF6-1", "DEN6A_HUMAN", "69575", "608" ], [ "Q8N1L9-1", "BATF2_HUMAN", "29398", "274" ], [ "Q8ND23-1", "CARL3_HUMAN", "150230", "1372" ], [ "P10606-1", "COX5B_HUMAN", "13696", "129" ], [ "Q9C0B1-1", "FTO_HUMAN", "58282", "505" ], [ "Q96BZ4-1", "PLD4_HUMAN", "55626", "506" ], [ "O95661-1", "DIRA3_HUMAN", "25861", "229" ] ] }, "readme": "Name\n - Human Protein Information (UniProtKB)\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-01-23T17:21:05.900608\n\nModified on\n - 2020-04-10T11:27:03.338813\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Information dataset contains human [taxid:9606] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.10.6/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_info_uniprotkb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_info_uniprotkb.csv\n Name: human_protein_info_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_info_uniprotkb.csv" }