{ "bcoid": "GLY_000031", "title": "Human Protein Alternative Name (UniProtKB)", "description": "The Human Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for human ...", "filename": "human_protein_altnames.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Alternative Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "Pyruvate kin..." ], [ "P30613-1...", "Pyruvate kin..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "P30613-1", "Pyruvate kinase isozymes L/R", "", "" ], [ "P30613-1", "Pyruvate kinase 1", "", "" ], [ "P30613-1", "R-type/L-type pyruvate kinase", "", "" ], [ "P30613-1", "Red cell/liver pyruvate kinase", "", "" ], [ "P23919-1", "dTMP kinase", "", "" ], [ "Q8NHX4-1", "Testis spermatocyte apoptosis-related protein 1", "", "" ], [ "Q8NHX4-1", "Testis and spermatogenesis cell-related protein 1", "", "" ], [ "Q8NHX9-1", "Voltage-dependent calcium channel protein TPC2", "", "" ], [ "Q9C0H9-5", "SNAP-25-interacting protein", "SNIP", "" ], [ "Q9C0H9-5", "p140Cap", "", "" ], [ "Q9C0H9-5", "p130Cas-associated protein", "", "" ], [ "Q96J66-1", "Multidrug resistance-associated protein 8", "", "" ], [ "Q9BTE7-1", "Defective in cullin neddylation protein 1-like protein", "", "" ], [ "Q96J65-1", "Multidrug resistance-associated protein 9", "", "" ], [ "Q9NYS7-1", "CS box-containing WD protein", "", "" ], [ "P40424-1", "Homeobox protein PBX1", "", "" ], [ "P40424-1", "Homeobox protein PRL", "", "" ], [ "P40425-1", "Protein G17", "", "" ], [ "P40425-1", "Homeobox protein PBX2", "", "" ], [ "P40426-1", "Homeobox protein PBX3", "", "" ], [ "P40429-1", "Large ribosomal subunit protein uL13", "", "" ], [ "P40429-1", "23 kDa highly basic protein", "", "" ], [ "P03891-1", "NADH dehydrogenase subunit 2", "", "" ], [ "P03897-1", "NADH dehydrogenase subunit 3", "", "" ], [ "P02760-1", "Uronic-acid-rich protein", "", "" ], [ "P02760-1", "Bikunin", "", "" ], [ "P02760-1", "HI-30", "", "" ], [ "P02760-1", "Alpha-1 microglycoprotein", "", "" ], [ "P02760-1", "Complex-forming glycoprotein heterogeneous in charge", "", "" ], [ "P02760-1", "EDC1", "", "" ], [ "P02763-1", "Orosomucoid-1", "OMD 1", "" ], [ "P02765-1", "Ba-alpha-2-glycoprotein", "", "" ], [ "P02765-1", "Alpha-2-Z-globulin", "", "" ], [ "P02765-1", "Fetuin-A", "", "" ], [ "P82921-1", "Mitochondrial small ribosomal subunit protein bS21m", "", "" ], [ "P02766-1", "Prealbumin", "", "" ], [ "P02766-1", "TBPA", "", "" ], [ "P02766-1", "ATTR", "", "" ], [ "Q9P2J5-1", "Leucyl-tRNA synthetase", "LeuRS", "" ], [ "H0YL14-1", "Herpes virus UL25-binding protein", "", "" ], [ "O43399-1", "Tumor protein D52-like 2", "", "" ], [ "Q9BXR3-1", "EnvK2 protein", "", "" ], [ "Q9BXR3-1", "HERV-K(HML-2.HOM) envelope protein", "", "" ], [ "Q9BXR3-1", "HERV-K108 envelope protein", "", "" ], [ "Q9BXR3-1", "Envelope polyprotein", "", "" ], [ "Q9BXR3-1", "HERV-K_7p22.1 provirus ancestral Env polyprotein", "", "" ], [ "Q9BXR3-1", "HERV-K(C7) envelope protein", "", "" ], [ "Q9BXR3-1", "Central open reading frame", "c-orf", "" ], [ "Q9BXR3-1", "Central open reading frame", "cORF", "" ], [ "Q9BXR3-1", "Rev-like protein", "", "" ], [ "Q9BXR3-1", "HERV-K108 Rec protein", "", "" ], [ "Q9BXR3-1", "HERV-K_7p22.1 provirus Rec protein", "", "" ], [ "Q9BXR3-1", "Endogenous retrovirus K protein 6", "", "" ], [ "Q9BXR3-1", "HERV-K(C7) Rec protein", "", "" ], [ "Q9BXR3-1", "HERV-K(HML-2.HOM) Rec protein", "", "" ], [ "Q9BXR3-1", "Rev/Rex homolog", "", "" ], [ "Q9BXR3-1", "K-Rev", "", "" ], [ "Q5VVP1-1", "Protein FAM75A6", "", "" ], [ "Q9BZG1-1", "Ras-related protein Rab-39", "", "" ], [ "Q9BZG1-1", "Ras-related protein Rah", "", "" ], [ "Q9BZG2-1", "Acid phosphatase 4", "", "" ], [ "Q9BZG8-1", "Ovarian cancer-associated gene 1 protein", "", "" ], [ "Q9BZG8-1", "S-adenosyl-L-methionine:L-histidine 3-amino-3-carboxypropyltransferase 1", "", "" ], [ "Q9BZG8-1", "Diphthamide biosynthesis protein 1", "", "" ], [ "Q9BZG8-1", "Diphtheria toxin resistance protein 1", "", "" ], [ "P09001-1", "Mitochondrial large ribosomal subunit protein uL3m", "", "" ], [ "Q14568-1", "Heat shock protein HSP 90-alpha A2 pseudogene", "", "" ], [ "Q14568-1", "Heat shock 90 kDa protein 1 alpha-like 3", "", "" ], [ "Q14563-1", "Semaphorin III", "Sema III", "" ], [ "Q14562-1", "RNA helicase HRH1", "", "" ], [ "Q14562-1", "DEAH box protein 8", "", "" ], [ "Q14566-1", "p105MCM", "", "" ], [ "A6NIR3-1", "Centaurin-gamma-like family member 2", "", "" ], [ "Q6ZMG9-1", "LAG1 longevity assurance homolog 6", "", "" ], [ "P41250-1", "Glycine--tRNA ligase", "", "" ], [ "P19075-1", "Tumor-associated antigen CO-029", "", "" ], [ "P19075-1", "Transmembrane 4 superfamily member 3", "", "" ], [ "O60729-1", "CDC14 cell division cycle 14 homolog B", "", "" ], [ "Q8WUF8-1", "Protein FAM172A", "", "" ], [ "Q8WUF5-1", "Inhibitor of ASPP protein", "Protein iASPP", "" ], [ "Q8WUF5-1", "PPP1R13B-like protein", "", "" ], [ "Q8WUF5-1", "NFkB-interacting protein 1", "", "" ], [ "Q96BT3-1", "Interphase centromere complex protein 22", "", "" ], [ "Q96BT7-1", "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ABH8", "", "2.1.1.229" ] ] }, "readme": "Name\n - Human Protein Alternative Name (UniProtKB)\n\nVersion\n - 1.10.6\n\nCreated on\n - 2019-01-23T17:21:05.898547\n\nModified on\n - 2020-04-10T11:26:42.330163\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for human [taxid:9606] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.10.6/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_altnames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_altnames.csv\n Name: human_protein_altnames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.10.6/reviewed/human_protein_altnames.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"123404\"", "downloadurl": "/ln2data/releases/data/v-1.10.6/reviewed/human_protein_altnames.csv" }