>>Priority reported 1|GLYG-1153|Implement API changes for batch search feedback 1|GLYG-1631|API changes for abundance data 1|GLYG-1625|Search extension to support compositions strings in global search 1|GLYG-1626|Search extension to support compositions strings in glycan simple search 1|GLYG-1650|glycan ID namespace init api changes >>Priority not reported 1|GLYG-1630|API changes for search result explaination function 1|GLYG-XXXX|https://api.tst.glygen.org/protein/detail/P0DTC2-1 1|GLYG-XXXX|isoform alignment for O75531-1 1|GLYG-1639|API changes for glycan category in protein in global search result >>Priorty not reported with blocker 0|GLYG-1634|API changes for reaction data 0|GLYG-1637|API changes fro glycan pathway information 0|GLYG-1629|Implement new use case API >> 1|GLYG-xxxx|New usecase API: give N-linked sites with SNV within 3 aa of Asn 1|GLYG-xxxx|New usecase API: give proteins & sites with Cys or a pattern at +X of a glycosite 1|GLYG-xxxx|Default values for enums in supersearch 1|GLYG-xxxx|Make glycation to be enum on supersearch init (1.10.3 API release) 1|GLYG-xxxx|Add protein and site information for the expression section of the publication 1|GLYG-xxxx|Consider empty abundance entries in publications/expression 1|GLYG-xxxx|All condition should appear in the formula for scoring explanation 1|GLYG-1641|API changes for toleranze input on site search (not clear, maybe doable now) 1|GLYG-1429|Evalutation of implementation of Asynchronous API calls 0|GLYG-1229|Discuss data caching and cleanup with Dacian 1|GLYG-1638|API changes for multi concept supersearch 1|GLYG-xxxx|Bionic download is not right, remove ID and make it unique 1|GLYG-xxxx|Bionic sequencs should not have Xxx (check next data iteration update) >>Now I am not giving bionic sequences if composition contains Xxx 1|GLYG-xxxx|recover term value by removing escapes when doing global search 1|GLYG-xxxx|add "Binding Glycans" section for both protein and glycoprotein in the globalsearch summary table 1|GLYG-xxxx|make neighbor categories consistent with snv_flag,glycosylation_flag .... 1|GLYG-xxxx|check this site query, and make sure up_seq interpretation is right 1|GLYG-xxxx|grits and glycowworkbench download issues 1|GLYG-xxxx|change upstream/downstream indexes (longest pep query is 8) 1|GLYG-xxxx|stop taking regular expressions (take like 2|TXR) 1|GLYG-XXX|try to find a non-glycoprotein interacting with a glycan Q15113-1,4,G16235VG Q15113-1,4,G19059PI Q9BZV3-1,10,G16235VG Q96GW7-1,7,G16235VG P98066-1,2,G16235VG P36363-1,1,G46732TY P07996-1,172,G19059PI Q91V88-1,0,G03536SO P12111-1,83,G16235VG P61148-1,0,G46732TY P38567-1,6,G16235VG P09038-4,0,G46732TY P00441-1,3,G19059PI P14210-1,68,G19059PI P13611-1,323,G16235VG P37237-1,2,G46732TY P55067-1,8,G16235VG P02649-1,23,G19059PI 1|GLYG-XXX|byonic download has a problem (try searching with mass range 700-2030) 1|GLYG-XXX|protein/site search/list has a problem 1|GLYG-XXX|descripancy on the result number vs shown on yellow labels for glycan 0|GLYG-XXX|supersearch_init is not working 0|GLYG-XXX|redundant annotation for P07202-1 0|GLYG-XXX|Super search init does not contain the "neighbors.categories" field supported from site search. 0|GLYG-XXX|the following queries are not working properly { "concept_query_list": [
 { "query": {
 "aggregator": "$and", 
 "unaggregated_list": [
 { "operator": "$eq", 
 "path": "neighbors.categories", 
 "order": 0, 
 "string_value": "glycation_flag"
 }, 
 {
 "operator": "$lte", 
 "path": "neighbors.distance", 
 "numeric_value": 2, 
 "order": 1
 }
 ], 
 "aggregated_list": []
 }, 
 "concept": "site"
 }
 ]
 } 0|GLYG-XXX| First query, Why is P02545-1 : 613 not found? { "concept_query_list": [ { "query": { "aggregator": "$and", "unaggregated_list": [ { "operator": "$eq", "path": "site_seq", "order": 0, "string_value": "S" }, { "operator": "$eq", "path": "neighbors.categories", "order": 1, "string_value": "phosphorylation_flag" }, { "operator": "$gte", "path": "neighbors.distance", "numeric_value": 100, "order": 2 }, { "operator": "$eq", "path": "glycosylation_flag", "order": 3, "string_value": "true" }, { "operator": "$eq", "path": "phosphorylation_flag", "order": 4, "string_value": "true" } ], "aggregated_list": [] }, "concept": "site" } ] } 0|GLYG-XXX|Why P61073-1 site 18 in the result. { "concept_query_list": [ { "query": { "aggregator": "$and", "unaggregated_list": [ { "operator": "$eq", "path": "site_seq", "order": 0, "string_value": "S" }, { "operator": "$eq", "path": "neighbors.categories", "order": 1, "string_value": "phosphorylation_flag" }, { "operator": "$eq", "path": "neighbors.distance", "numeric_value": 2, "order": 2 }, { "operator": "$eq", "path": "glycosylation_flag", "order": 3, "string_value": "true" }, { "operator": "$eq", "path": "phosphorylation_flag", "order": 4, "string_value": "true" } ], "aggregated_list": [] }, "concept": "site" } ] }