{ "bcoid": "GLY_000140", "title": "Human Glycan Citations", "description": "Publication data for the PMID's sourced from UniCarbKB", "filename": "human_glycan_citations.csv", "filetype": "csv", "categories": { "status": "Reviewed" }, "minitable": { "content": [ [ "G57321FI...", "16174741..." ], [ "G36123IU...", "2481651..." ] ], "headers": [ "glytoucan_ac...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_acc" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" } ], [ "G57321FI", "16174741", "Distinct functional units of the Golgi complex in Drosophila cells.", "Proceedings of the National Academy of Sciences of the United States of America", "2005 Sep 20" ], [ "G36123IU", "2481651", "Expression of TAG-72 in normal colon, transitional mucosa, and colon cancer.", "International journal of cancer", "1989 Dec 15" ], [ "G36123IU", "8667623", "Immunohistochemical expression of sialyl Tn, sialyl Lewis a, sialyl Lewis a-b-, and sialyl Lewis x in primary tumor and metastatic lymph nodes in human gastric cancer.", "Journal of surgical oncology", "1996 Jul" ], [ "G00051MO", "15182935", "Expression of cell surface Lewis X and Y antigens and FUT4 mRNA is increased in Jurkat cells undergoing apoptosis.", "Biochimica et biophysica acta", "2004 Jun 11" ], [ "G45827GY", "3514610", "Structures of glycosphingolipids isolated from human embryonal carcinoma cells. The presence of mono- and disialosyl glycolipids with blood group type 1 sequence.", "The Journal of biological chemistry", "1986 Apr 15" ], [ "G00031MO", "11501845", "Expression of mucin-associated carbohydrate core antigens in esophageal squamous cell carcinomas.", "Anticancer research", "2001 May-Jun" ], [ "G36123IU", "11501845", "Expression of mucin-associated carbohydrate core antigens in esophageal squamous cell carcinomas.", "Anticancer research", "2001 May-Jun" ], [ "G78818SP", "10350354", "A specific loss of C-series gangliosides in pancreas of streptozotocin-induced diabetic rats.", "Life sciences", "1999" ], [ "G74121RX", "8780713", "Cloning and expression of cDNA for O-acetylation of GD3 ganglioside.", "Biochemical and biophysical research communications", "1996 Aug 23" ], [ "G00052MO", "2665636", "The tumor-associated antigens BR55-2, GA73-3 and GICA 19-9 in normal and corresponding neoplastic human tissues, especially gastrointestinal tissues.", "Anticancer research", "1989 Mar-Apr" ], [ "G02657AK", "2159145", "Human monoclonal antibody with dual GM2/GD2 specificity derived from an immunized melanoma patient.", "Proceedings of the National Academy of Sciences of the United States of America", "1990 May" ], [ "G56478LD", "2159145", "Human monoclonal antibody with dual GM2/GD2 specificity derived from an immunized melanoma patient.", "Proceedings of the National Academy of Sciences of the United States of America", "1990 May" ], [ "G00054MO", "7684905", "Specific expression of a complex sialyl Lewis X antigen on high endothelial venules of human lymph nodes: possible candidate for L-selectin ligand.", "Biochemical and biophysical research communications", "1993 May 28" ], [ "G80722US", "7684905", "Specific expression of a complex sialyl Lewis X antigen on high endothelial venules of human lymph nodes: possible candidate for L-selectin ligand.", "Biochemical and biophysical research communications", "1993 May 28" ], [ "G49108TO", "16000877", "O-GlcNAc modification on IRS-1 and Akt2 by PUGNAc inhibits their phosphorylation and induces insulin resistance in rat primary adipocytes.", "Experimental & molecular medicine", "2005 Jun 30" ], [ "G37184KW", "9312075", "Expression cloning of rat cDNA encoding UDP-galactose:GD2 beta1,3-galactosyltransferase that determines the expression of GD1b/GM1/GA1.", "The Journal of biological chemistry", "1997 Oct 3" ], [ "G21856LC", "9312075", "Expression cloning of rat cDNA encoding UDP-galactose:GD2 beta1,3-galactosyltransferase that determines the expression of GD1b/GM1/GA1.", "The Journal of biological chemistry", "1997 Oct 3" ], [ "G36123IU", "12460925", "Vascular endothelial growth factor secretion by tumor-infiltrating macrophages essentially supports tumor angiogenesis, and IgG immune complexes potentiate the process.", "Cancer research", "2002 Dec 1" ], [ "G00054MO", "9790295", "Identification of sialyl Lewis-x in squamous cell carcinoma of the head and neck.", "Head & neck", "1998 Dec" ], [ "G49108TO", "16052526", "Role of O-linked beta-N-acetylglucosamine modification in the subcellular distribution of alpha4 phosphoprotein and Sp1 in rat lymphoma cells.", "Journal of cellular biochemistry", "2005 Oct 15" ], [ "G99315PE", "7797428", "Detection of a glycosphingolipid antigen in bladder cancer cells with monoclonal antibody MRG-1.", "The Histochemical journal", "1995 Mar" ], [ "G61459JW", "7809154", "Specificity analysis of blood group Lewis-y (Le(y)) antibodies generatedagainst synthetic and natural Le(y) determinants.", "Proceedings of the National Academy of Sciences of the United States of America", "1994 Dec 20" ], [ "G00052MO", "7809154", "Specificity analysis of blood group Lewis-y (Le(y)) antibodies generatedagainst synthetic and natural Le(y) determinants.", "Proceedings of the National Academy of Sciences of the United States of America", "1994 Dec 20" ], [ "G49108TO", "1629228", "The cytoskeletal protein talin is O-glycosylated.", "The Journal of biological chemistry", "1992 Jul 15" ], [ "G00059MO", "16476743", "Targeted disruption of Gb3/CD77 synthase gene resulted in the complete deletion of globo-series glycosphingolipids and loss of sensitivity to verotoxins.", "The Journal of biological chemistry", "2006 Apr 14" ], [ "G00054MO", "10200296", "Reconstitution of functional L-selectin ligands on a cultured human endothelial cell line by cotransfection of alpha1-->3 fucosyltransferase VII and newly cloned GlcNAcbeta:6-sulfotransferase cDNA.", "Proceedings of the National Academy of Sciences of the United States of America", "1999 Apr 13" ], [ "G80722US", "10200296", "Reconstitution of functional L-selectin ligands on a cultured human endothelial cell line by cotransfection of alpha1-->3 fucosyltransferase VII and newly cloned GlcNAcbeta:6-sulfotransferase cDNA.", "Proceedings of the National Academy of Sciences of the United States of America", "1999 Apr 13" ], [ "G00039MO", "16630548", "The wbnH gene of Escherichia coli O86:H2 encodes an alpha-1,3-N-acetylgalactosaminyl transferase involved in the O-repeating unit biosynthesis.", "Biochemical and biophysical research communications", "2006 Jun 2" ], [ "G57321FI", "16630548", "The wbnH gene of Escherichia coli O86:H2 encodes an alpha-1,3-N-acetylgalactosaminyl transferase involved in the O-repeating unit biosynthesis.", "Biochemical and biophysical research communications", "2006 Jun 2" ], [ "G43702JT", "12761550", "Chondroitin proteoglycans are involved in cell division of Caenorhabditis elegans.", "Nature", "2003 May 22" ], [ "G57321FI", "16251947", "Protein glycosylation: chaperone mutation in Tn syndrome.", "Nature", "2005 Oct 27" ], [ "G00068MO", "16239572", "Variations in Helicobacter pylori lipopolysaccharide to evade the innate immune component surfactant protein D.", "Infection and immunity", "2005 Nov" ], [ "G67988RO", "8978086", "The identification a novel gene required for lipopolysaccharide biosynthesis by Haemophilus influenzae RM7004, using transposon Tn916 mutagenesis.", "FEMS microbiology letters", "1996 Dec 15" ], [ "G58896AZ", "9414130", "Preparation of peptides which mimic glycosphingolipids by using phage peptide library and their modulation on beta-galactosidase activity.", "FEBS letters", "1997 Nov 24" ], [ "G06580KR", "9414130", "Preparation of peptides which mimic glycosphingolipids by using phage peptide library and their modulation on beta-galactosidase activity.", "FEBS letters", "1997 Nov 24" ], [ "G57321FI", "1422133", "Application of chemically desialylated and degalactosylated human glycophorin for induction and characterization of anti-Tn monoclonal antibodies.", "Glycoconjugate journal", "1992 Jun" ], [ "G36123IU", "15944793", "Simple mucin-type cancer associated antigens are pre-cancerous biomarkers during 1,2-dimethylhydrazine-induced rat colon carcinogenesis.", "Oncology reports", "2005 Jul" ], [ "G57321FI", "15944793", "Simple mucin-type cancer associated antigens are pre-cancerous biomarkers during 1,2-dimethylhydrazine-induced rat colon carcinogenesis.", "Oncology reports", "2005 Jul" ], [ "G49108TO", "14985449", "Identification of O-linked N-acetylglucosamine proteins in rat skeletal muscle using two-dimensional gel electrophoresis and mass spectrometry.", "Molecular & cellular proteomics : MCP", "2004 Jun" ], [ "G00058MO", "438154", "Developmental change and genetic defect in the carbohydrate structure of band 3 glycoprotein of human erythrocyte membrane.", "The Journal of biological chemistry", "1979 May 25" ], [ "G56045WU", "438154", "Developmental change and genetic defect in the carbohydrate structure of band 3 glycoprotein of human erythrocyte membrane.", "The Journal of biological chemistry", "1979 May 25" ], [ "G21856LC", "3667566", "Application of liposomes to generation of monoclonal antibody to glycosphingolipid: production of monoclonal antibody to GgOse4Cer.", "Journal of biochemistry", "1987 Jul" ], [ "G57321FI", "16091596", "Characterization of wheat germ agglutinin ligand on soluble glycoproteins in Caenorhabditis elegans.", "Journal of biochemistry", "2005 Aug" ], [ "G00053MO", "3162916", "Expression of CEA, CA125, CA19-9 and human milk fat globule membrane antigen in ovarian tumours.", "Journal of clinical pathology", "1988 Mar" ], [ "G00031MO", "9359491", "Stimulation of proliferation in human colon cancer cells by human monoclonal antibodies against the TF antigen (galactose beta1-3 N-acetyl-galactosamine).", "International journal of cancer", "1997 Nov 4" ], [ "G57321FI", "12146959", "Effect of glycosylation on MUC1 humoral immune recognition: NMR studies of MUC1 glycopeptide-antibody interactions.", "Biochemistry", "2002 Aug 6" ], [ "G00031MO", "15623485", "Distribution of HPV infection and tumour markers in cervical intraepithelial neoplasia from cone biopsies of Mozambican women.", "Journal of clinical pathology", "2005 Jan" ], [ "G36123IU", "8364861", "Predictive value of preoperative serum sialyl Tn antigen levels in prognosis of patients with gastric cancer.", "Cancer", "1993 Sep 15" ], [ "G00031MO", "2335739", "Expression patterns of the T antigen and the cryptic T antigen in rat fetuses: detection with the lectin amaranthin.", "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society", "1990 Jun" ], [ "G45058HZ", "2479468", "Five new epitope-defined monoclonal antibodies reactive with GM2 and human glioma and medulloblastoma cell lines.", "Cancer research", "1989 Dec 1" ], [ "G36123IU", "8625173", "Quantitative lectin-histochemical and immunohistochemical studies on the occurrence of alpha(2,3)- and alpha(2,6)-linked sialic acid residues in colorectal carcinomas. Relation to clinicopathologic features.", "Cancer", "1995 Sep 1" ], [ "G00051MO", "6187397", "My-1, the human myeloid-specific antigen detected by mouse monoclonal antibodies, is a sugar sequence found in lacto-N-fucopentaose III.", "Blood", "1983 May" ], [ "G57321FI", "7683697", "Persistent repression of a functional allele can be responsible for galactosyltransferase deficiency in Tn syndrome.", "The Journal of clinical investigation", "1993 May" ], [ "G49108TO", "12831837", "The transcription factor PDX-1 is post-translationally modified by O-linked N-acetylglucosamine and this modification is correlated with its DNA binding activity and insulin secretion in min6 beta-cells.", "Archives of biochemistry and biophysics", "2003 Jul 15" ], [ "G19059PI", "18316376", "Identification of chondroitin sulfate glucuronyltransferase as chondroitin synthase-3 involved in chondroitin polymerization: chondroitin polymerization is achieved by multiple enzyme complexes consisting of chondroitin synthase family members.", "The Journal of biological chemistry", "2008 Apr 25" ], [ "G00053MO", "2318868", "Occurrence of tetra- and pentasaccharides with the sialyl-Le(a) structure in human milk.", "The Journal of biological chemistry", "1990 Mar 25" ], [ "G49108TO", "15373830", "The tumor suppressor HIC1 (hypermethylated in cancer 1) is O-GlcNAc glycosylated.", "European journal of biochemistry", "2004 Oct" ], [ "G49108TO", "8999954", "A subpopulation of estrogen receptors are modified by O-linked N-acetylglucosamine.", "The Journal of biological chemistry", "1997 Jan 24" ], [ "G00031MO", "19496993", "Specific interaction of the legume lectins, concanavalin a and peanut agglutinin, with phycocyanin.", "Photochemistry and photobiology", "2009 Sep-Oct" ], [ "G36123IU", "8453646", "Expression of Sialyl-Tn antigens in normal squamous epithelium, dysplasia, and squamous cell carcinoma in the esophagus.", "Cancer research", "1993 Apr 1" ], [ "G00031MO", "11406562", "The role of Thomsen-Friedenreich antigen in adhesion of human breast and prostate cancer cells to the endothelium.", "Cancer research", "2001 Jun 15" ], [ "G00031MO", "10506931", "Immunoreactivity of Thomsen-Friedenreich (TF) antigen in human neoplasms: the importance of carrier-specific glycotope expression on MUC1.", "Histology and histopathology", "1999 Oct" ], [ "G57321FI", "19528665", "A newly generated functional antibody identifies Tn antigen as a novel determinant in the cancer cell-lymphatic endothelium interaction.", "Glycobiology", "2009 Oct" ], [ "G56478LD", "3167861", "Generation of two murine monoclonal antibodies that can discriminate N-glycolyl and N-acetyl neuraminic acid residues of GM2 gangliosides.", "Cancer research", "1988 Nov 1" ], [ "G00031MO", "7545084", "Monoclonal antibody BW835 defines a site-specific Thomsen-Friedenreich disaccharide linked to threonine within the VTSA motif of MUC1 tandem repeats.", "Cancer research", "1995 Sep 15" ], [ "G57321FI", "11882908", "MUC1 mucin and carbohydrate associated antigens as tumor markers in head and neck squamous cell carcinoma.", "Pathology oncology research : POR", "2001" ], [ "G00031MO", "11396208", "Immunohistochemical expression of T, Tn and sialyl-Tn antigens and clinical outcome in human breast carcinoma.", "Anticancer research", "2001 Mar-Apr" ], [ "G36123IU", "11396208", "Immunohistochemical expression of T, Tn and sialyl-Tn antigens and clinical outcome in human breast carcinoma.", "Anticancer research", "2001 Mar-Apr" ], [ "G57321FI", "11396208", "Immunohistochemical expression of T, Tn and sialyl-Tn antigens and clinical outcome in human breast carcinoma.", "Anticancer research", "2001 Mar-Apr" ], [ "G02657AK", "6385004", "Localization of the gangliosides GD2 and GD3 in adhesion plaques and on the surface of human melanoma cells.", "Proceedings of the National Academy of Sciences of the United States of America", "1984 Sep" ], [ "G98544DH", "6385004", "Localization of the gangliosides GD2 and GD3 in adhesion plaques and on the surface of human melanoma cells.", "Proceedings of the National Academy of Sciences of the United States of America", "1984 Sep" ], [ "G78818SP", "1695858", "c-pathway polysialogangliosides in the nervous tissue of vertebrates, reacting with the monoclonal antibody Q211.", "Brain research", "1990 May 28" ], [ "G00052MO", "11479278", "The fucosylated histo-blood group antigens H type 2 (blood group O, CD173) and Lewis Y (CD174) are expressed on CD34+ hematopoietic progenitors but absent on mature lymphocytes.", "Glycobiology", "2001 Aug" ], [ "G51056AN", "16310757", "Comparison of curdlan and its carboxymethylated derivative by means of Rheology, DSC, and AFM.", "Carbohydrate research", "2006 Jan 16" ], [ "G49108TO", "1371281", "Characterization and dynamics of O-linked glycosylation of human cytokeratin 8 and 18.", "The Journal of biological chemistry", "1992 Feb 25" ], [ "G36123IU", "11291879", "Circulating sialyl Lewis(x), sialyl Lewis(a), and sialyl Tn antigens in colorectal cancer patients: multivariate analysis of predictive factors for serum antigen levels.", "Journal of gastroenterology", "2001 Mar" ], [ "G45827GY", "6192330", "A marker of human foetal endoderm defined by a monoclonal antibody involves Type 1 blood group chains.", "Molecular immunology", "1983 Jun" ], [ "G00051MO", "6270685", "Monoclonal antibodies that demonstrate specificity for several types of human lung cancer.", "Proceedings of the National Academy of Sciences of the United States of America", "1981 Jul" ], [ "G02657AK", "6296843", "Identification of a human neuroectodermal tumor antigen (OFA-I-2) as ganglioside GD2.", "Proceedings of the National Academy of Sciences of the United States of America", "1982 Dec" ], [ "G39023AU", "3997830", "Lea-active heptaglycosylceramide, a hybrid of type 1 and type 2 chain, and the pattern of glycolipids with Lea, Leb, X (Lex), and Y (Ley) determinants in human blood cell membranes (ghosts). Evidence that type 2 chain can elongate repetitively but type 1 chain cannot.", "The Journal of biological chemistry", "1985 May 25" ], [ "G00051MO", "3997830", "Lea-active heptaglycosylceramide, a hybrid of type 1 and type 2 chain, and the pattern of glycolipids with Lea, Leb, X (Lex), and Y (Ley) determinants in human blood cell membranes (ghosts). Evidence that type 2 chain can elongate repetitively but type 1 chain cannot.", "The Journal of biological chemistry", "1985 May 25" ], [ "G37184KW", "8624728", "Developmental changes of ganglioside expressions in postnatal rat cerebellar cortex.", "Brain research", "1995 Nov 27" ], [ "G18625KA", "8624728", "Developmental changes of ganglioside expressions in postnatal rat cerebellar cortex.", "Brain research", "1995 Nov 27" ], [ "G74121RX", "8624728", "Developmental changes of ganglioside expressions in postnatal rat cerebellar cortex.", "Brain research", "1995 Nov 27" ] ] }, "readme": "Name\n - Human Glycan Citations\n\nVersion\n - 1.0.13\n\nCreated on\n - 2019-04-16T16:49:36.812969\n\nModified on\n - 2019-04-18T16:06:37.966754\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Brian Fotchman [bfochtman@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - Publication data for the PMID's sourced from UniCarbKB\n\nDescription Domain\n Keywords\n - citations\n\n Pipeline Steps\n - Step-0: The columns \"evidence\" and \"uniprotkb_acc_canonical\" was extracted from the source file and was sorted and made unique.\n - Step-1: The medline records for the PMIDs extracted from output file of step 2 were downloaded and data such as journal name, title and publication date was extracted.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/make-citations-table.py\n\n\n Software Prerequisites\n\nI/O Domain\n Input Subdomain\n Name: human_glycan_evidence.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/allrefs.txt\n Name: human_glycan_evidence.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/human_glycan_evidence.csv\n Output Subdomain\n Name: human_glycan_citations.csv\n URI: http://data.glygen.org/datasets/reviewed/human_glycan_citations.csv\n Name: human_glycan_evidence.csv\n URI: http://data.glygen.org/datasets/reviewed/human_glycan_citations.csv\n Name: human_glycan_citations.log\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/logs/human_glycan_citations.log\n Name: human_glycan_citations.stat.csv\n URI: http://data.glygen.org/datasets/reviewed/human_glycan_citations.stat.csv\n\nFields\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"598\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"792\"\n Name: \"glytoucan_acc\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"108\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"216\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"792\"", "downloadurl": "/ln2data/releases/data/v-1.0.13/reviewed/human_glycan_citations.csv" }