{ "bcoid": "GLY_000127", "title": "Human UniProtKB Xref RefSeq", "description": "The Human [taxid:9606] UniprotKB Xref RefSeq contains human UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_refseq.csv", "filetype": "csv", "categories": { "status": "Reviewed" }, "minitable": { "content": [ [ "Q8TBF5-1...", "NP_060331.3..." ], [ "Q9NQ79-1...", "NP_060528.3..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8TBF5-1", "NP_060331.3", "NP_060331.3" ], [ "Q9NQ79-1", "NP_060528.3", "NP_060528.3" ], [ "Q8IZF5-1", "NP_001138640.1", "NP_001138640.1" ], [ "P30613-1", "NP_000289.1", "NP_000289.1" ], [ "Q5H9L4-1", "NP_079161.3", "NP_079161.3" ], [ "Q9BZL4-1", "NP_060077.1", "NP_060077.1" ], [ "Q9NVL1-1", "NP_060642.2", "NP_060642.2" ], [ "Q9NQ75-1", "NP_001157588.1", "NP_001157588.1" ], [ "P20936-1", "NP_002881.1", "NP_002881.1" ], [ "Q8NFX7-1", "NP_001291405.1", "NP_001291405.1" ], [ "Q9UM21-1", "NP_036346.1", "NP_036346.1" ], [ "Q496A3-1", "NP_659463.1", "NP_659463.1" ], [ "Q70EL4-1", "NP_694942.3", "NP_694942.3" ], [ "Q8TBF2-1", "NP_689584.2", "NP_689584.2" ], [ "Q15573-1", "NP_001188465.1", "NP_001188465.1" ], [ "Q15572-1", "XP_005256283.1", "XP_005256283.1" ], [ "Q9BQP9-1", "NP_848561.2", "NP_848561.2" ], [ "P23919-1", "NP_036277.2", "NP_036277.2" ], [ "Q9NXR8-1", "NP_061944.2", "NP_061944.2" ], [ "Q9C0H2-1", "NP_079526.1", "NP_079526.1" ], [ "Q9C0H5-1", "NP_001295136.1", "NP_001295136.1" ], [ "Q4VXU2-1", "NP_001118228.1", "NP_001118228.1" ], [ "Q9C0H6-1", "NP_061990.2", "NP_061990.2" ], [ "Q9NXR1-2", "NP_001137451.1", "NP_001137451.1" ], [ "Q00537-1", "NP_002586.2", "NP_002586.2" ], [ "Q00536-1", "NP_006192.1", "NP_006192.1" ], [ "Q9NXR5-1", "NP_060134.2", "NP_060134.2" ], [ "Q96J66-1", "NP_115972.2", "NP_115972.2" ], [ "Q9UBM8-1", "NP_037376.2", "NP_037376.2" ], [ "Q9H2V7-1", "NP_001135920.1", "NP_001135920.1" ], [ "O00241-1", "NP_006056.2", "NP_006056.2" ], [ "O00716-1", "NP_001940.1", "NP_001940.1" ], [ "Q8IX01-1", "NP_001017392.2", "NP_001017392.2" ], [ "Q9UBM1-1", "NP_009100.2", "NP_009100.2" ], [ "A8MTA8-1", "NP_001157782.1", "NP_001157782.1" ], [ "P24522-1", "NP_001915.1", "NP_001915.1" ], [ "Q13835-1", "NP_000290.2", "NP_000290.2" ], [ "A0AVF1-1", "NP_079202.2", "NP_079202.2" ], [ "P40424-1", "NP_002576.1", "NP_002576.1" ], [ "P40426-1", "NP_006186.1", "NP_006186.1" ], [ "Q8IZK6-1", "NP_694991.2", "NP_694991.2" ], [ "P51991-1", "NP_001317178.1", "NP_001317178.1" ], [ "Q13838-1", "NP_004631.1", "NP_004631.1" ], [ "O00337-1", "NP_001274691.1", "NP_001274691.1" ], [ "Q8TDW7-3", "NP_001008781.2", "NP_001008781.2" ], [ "Q5M775-1", "NP_001028725.1", "NP_001028725.1" ], [ "P48960-1", "NP_510966.1", "NP_510966.1" ], [ "P02768-1", "NP_000468.1", "NP_000468.1" ], [ "P05386-1", "NP_000994.1", "NP_000994.1" ], [ "P24863-1", "NP_005181.2", "NP_005181.2" ], [ "P08559-1", "NP_000275.1", "NP_000275.1" ], [ "Q7L266-1", "NP_001077395.1", "NP_001077395.1" ], [ "Q9UJ70-1", "NP_060037.3", "NP_060037.3" ], [ "Q15165-2", "NP_000296.2", "NP_000296.2" ], [ "Q9UJ78-4", "NP_001136156.1", "NP_001136156.1" ], [ "O75449-1", "NP_008975.1", "NP_008975.1" ], [ "P35579-1", "NP_002464.1", "NP_002464.1" ], [ "O15254-1", "NP_003492.2", "NP_003492.2" ], [ "Q86WA8-1", "NP_113678.2", "NP_113678.2" ], [ "P60153-1", "NP_001001673.2", "NP_001001673.2" ], [ "Q8N1G0-1", "NP_001291692.1", "NP_001291692.1" ], [ "O15259-1", "NP_997064.2", "NP_997064.2" ], [ "P41180-1", "XP_006713852.1", "XP_006713852.1" ], [ "Q86XA0-1", "NP_001073979.3", "NP_001073979.3" ], [ "P29401-1", "NP_001055.1", "NP_001055.1" ], [ "Q5VWT5-1", "NP_001004303.3", "NP_001004303.3" ], [ "Q9H0S4-1", "NP_057439.2", "NP_057439.2" ], [ "P07900-1", "NP_005339.3", "NP_005339.3" ], [ "O14776-1", "NP_006697.2", "NP_006697.2" ], [ "O00330-1", "NP_003468.2", "NP_003468.2" ], [ "Q96CS2-1", "NP_612452.1", "NP_612452.1" ], [ "Q9P219-1", "NP_001073883.2", "NP_001073883.2" ], [ "Q9P218-1", "NP_065933.2", "NP_065933.2" ], [ "Q5W111-1", "NP_065189.1", "NP_065189.1" ], [ "Q96CS7-1", "NP_001094093.1", "NP_001094093.1" ], [ "Q01113-1", "NP_002177.2", "NP_002177.2" ], [ "Q9UK17-1", "NP_004971.2", "NP_004971.2" ], [ "Q9P212-1", "NP_057425.3", "NP_057425.3" ], [ "Q92833-1", "NP_004964.2", "NP_004964.2" ], [ "Q92832-1", "NP_006148.2", "NP_006148.2" ], [ "Q92830-1", "NP_066564.2", "NP_066564.2" ], [ "Q969K7-1", "NP_277039.1", "NP_277039.1" ], [ "Q969K4-1", "NP_742024.1", "NP_742024.1" ], [ "Q92838-1", "NP_001390.1", "NP_001390.1" ] ] }, "readme": "Name\n - Human UniProtKB Xref RefSeq\n\nVersion\n - 1.0.13\n\nCreated on\n - 2019-03-15T16:20:41.396963\n\nModified on\n - 2019-04-08T12:24:45.660821\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Leyla Garcia [ljgarcia@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human [taxid:9606] UniprotKB Xref RefSeq contains human UniProtKB canonical accessions cross-referenced to RefSeq database accessions/identifiers\n - NCBI RefSeq is a comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.\n - The dataset is derived from 2018-11 UniProt release. The dataset is contributed by EMBL-EB-UniProt and processed by GlyGen. If you use this dataset please provide proper attribution to EMBL-EB-UniProt and GlyGen\n\nDescription Domain\n Keywords\n - protein sequence\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to NCBI RefSeq database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-9606-homo-sapiens-2018-11.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/uniprot-proteome-9606-homo-sapiens-2018-11.nt\n Output Subdomain\n Name: human_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/human_protein_xref_refseq.csv\n Name: human_protein_xref_refseq.stat.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/human_protein_xref_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"9742\"\n Name: \"database_label\"\n Description: \"\"\n Unique Values: \"9742\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"9742\"", "downloadurl": "/ln2data/releases/data/v-1.0.13/reviewed/human_protein_xref_refseq.csv" }