{ "bcoid": "GLY_000113", "title": "Human UniProtKB Xref OMA", "description": "The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_oma.csv", "filetype": "csv", "categories": { "status": "Reviewed" }, "minitable": { "content": [ [ "Q8TBF4-1...", "AHNCARA..." ], [ "O60507-1...", "YLGRHAM..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8TBF4-1", "AHNCARA", "" ], [ "O60507-1", "YLGRHAM", "" ], [ "Q9NQ79-1", "YAIYIAN", "" ], [ "Q9NRQ5-1", "KLRGGQT", "" ], [ "Q8IZF5-1", "FGCLMDK", "" ], [ "P30613-1", "MEGPAGY", "" ], [ "Q5H9L4-1", "KQIHYME", "" ], [ "Q9BZL4-1", "NSEGPAQ", "" ], [ "Q9NVL1-1", "MESTWRW", "" ], [ "Q5QJ38-1", "FHKYARE", "" ], [ "Q9NQ75-1", "ELAFCRG", "" ], [ "P20930-1", "QDTIRGH", "" ], [ "P20933-1", "NIENHDT", "" ], [ "P20936-1", "EPYMEVV", "" ], [ "Q8NFX7-1", "IFAPHDE", "" ], [ "Q9UM21-1", "SSEDWMI", "" ], [ "Q496A3-1", "YPEQSKD", "" ], [ "P83859-1", "CRFRFGR", "" ], [ "P40617-1", "CFHIVIL", "" ], [ "Q70EL4-1", "WQQQQAH", "" ], [ "Q15573-1", "SYFWAKS", "" ], [ "Q15572-1", "QVVTCTV", "" ], [ "Q9BQP9-1", "HKEWFSA", "" ], [ "Q9H999-1", "HDLPTFI", "" ], [ "P23919-1", "FEGVDRC", "" ], [ "Q8NHX4-1", "PRAFCSC", "" ], [ "Q8NHX9-1", "PHPGWRP", "" ], [ "Q6ZNW5-1", "LCELAGH", "" ], [ "Q9NXR8-1", "DNCPYEW", "" ], [ "Q9C0H2-1", "LNADCCC", "" ], [ "Q9C0H5-1", "DEVNCMK", "" ], [ "Q4VXU2-1", "PIMSIRV", "" ], [ "Q9C0H6-1", "HFQANED", "" ], [ "H0YC42-1", "PFNFEQG", "" ], [ "Q9NXR1-2", "FRCICER", "" ], [ "Q00537-1", "MKHAYFR", "" ], [ "Q00536-1", "ELHFIFK", "" ], [ "Q9NXR5-1", "NLHYGHY", "" ], [ "Q96J66-1", "FEGVYYG", "" ], [ "Q9UBM8-1", "FNSSWRE", "" ], [ "O00716-1", "LLCPDEE", "" ], [ "Q9UBM1-1", "PFTEEIY", "" ], [ "A8MTA8-1", "HTYGHLT", "" ], [ "Q9UBM4-1", "FCDPEEH", "" ], [ "P24522-1", "QWVPIIN", "" ], [ "Q13835-1", "AVKKCPV", "" ], [ "Q7Z3T1-1", "NPRLCRG", "" ], [ "A0AVF1-1", "RCYIMNQ", "" ], [ "P40424-1", "STPNSAX", "" ], [ "P40425-1", "GAGQMYS", "" ], [ "Q8IZK6-1", "FLSCICC", "" ], [ "P28566-1", "PLSITYI", "" ], [ "P51991-1", "LMEGYAF", "" ], [ "Q13838-1", "HGLLQYY", "" ], [ "O00337-1", "HRWIVQT", "" ], [ "Q8TDW7-3", "GHLVTQV", "" ], [ "Q5M775-1", "IYLEHSP", "" ], [ "Q8WTV0-1", "ANGTDYP", "" ], [ "A0A075B6S2-1", "IQPLTET", "" ], [ "P08842-1", "TNWEGGI", "" ], [ "P03891-1", "HFWVPEV", "" ], [ "Q5VUR7-1", "YVEERIC", "" ], [ "P48960-1", "ICAFWKS", "" ], [ "P03897-1", "DAYECGI", "" ], [ "P02768-1", "HKECCHG", "" ], [ "A0A075B7E8-1", "MAVYYCT", "" ], [ "P20645-1", "SDWIMLI", "" ], [ "P05386-1", "ANQELAC", "" ], [ "P05387-1", "AFFNFTM", "" ], [ "P24863-1", "SSHHQQW", "" ], [ "P08559-1", "RRFEDKC", "" ], [ "J3KTE0-1", "QMAAPRK", "" ], [ "Q7L266-1", "GITGKWP", "" ], [ "P18075-1", "QISVYQV", "" ], [ "Q9UQ05-1", "RELRHIM", "" ], [ "Q9UJ70-1", "PMDYSVN", "" ], [ "Q9UJ71-1", "TWYSAEQ", "" ], [ "Q9UJ72-1", "FCGDYVQ", "" ], [ "O60508-1", "SGGYVCF", "" ], [ "Q15166-1", "YFTNFFL", "" ], [ "A0A075B6S4-1", "SEDFAMY", "" ], [ "Q9UJ78-4", "GTWPRIL", "" ], [ "Q86WA9-1", "HYEIYGP", "" ], [ "O75449-1", "YSDPKPH", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref OMA\n\nVersion\n - 1.0.13\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2019-04-23T17:19:52.926480\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Leyla Garcia [ljgarcia@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers\n - The OMA (\u201cOrthologous MAtrix\u201d) project is a method and database for the inference of orthologs among complete genomes.\n - The dataset is derived from 2018-11 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProt and GlyGen\n\nDescription Domain\n Keywords\n - ortholog\n - OMA\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-9606-homo-sapiens-2018-11.nt\n URI: http://data.glygen.org/datasets/source/uniprot-proteome-9606-homo-sapiens-2018-11.nt\n Name: human_protein_idmapping.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/human_protein_idmapping.csv\n Output Subdomain\n Name: human_protein_xref_oma.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/human_protein_xref_oma.csv\n Name: human_protein_xref_oma.stat.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/human_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"17328\"\n Name: \"database_label\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"17317\"", "downloadurl": "/ln2data/releases/data/v-1.0.13/reviewed/human_protein_xref_oma.csv" }