{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/allrefs.txt", 
                    "filename": "human_glycan_evidence.csv"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/human_glycan_evidence.csv", 
                    "filename": "human_glycan_evidence.csv"
                }
            }
        ], 
        "output_subdomain": [
            {
                "mediatype": "", 
                "uri": {
                    "uri": "http://data.glygen.org/datasets/reviewed/human_glycan_citations.csv", 
                    "filename": "human_glycan_citations.csv"
                }
            }, 
            {
                "mediatype": "", 
                "uri": {
                    "uri": "http://data.glygen.org/datasets/reviewed/human_glycan_citations.csv", 
                    "filename": "human_glycan_evidence.csv"
                }
            }, 
            {
                "mediatype": "", 
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/logs/human_glycan_citations.log", 
                    "filename": "human_glycan_citations.log"
                }
            }, 
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/datasets/reviewed/human_glycan_citations.stat.csv", 
                    "filename": "human_glycan_citations.stat.csv"
                }
            }
        ]
    }, 
    "spec_version": "1.3.0", 
    "object_id": "https://biocomputeobject.org/GLY_000140/1.0.13", 
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }
                ]
            }
        }
    ], 
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/", 
        "name": "Human Glycan Citations", 
        "contributors": [
            {
                "affiliation": "George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
            }, 
            {
                "affiliation": "George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
            }, 
            {
                "affiliation": "George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Brian Fotchman", 
                "email": "bfochtman@gwu.edu"
            }
        ], 
        "created": "2019-04-16T16:49:36.812969", 
        "modified": "2019-04-18T16:06:37.966754", 
        "version": "1.0.13"
    }, 
    "description_domain": {
        "keywords": [
            "citations"
        ], 
        "pipeline_steps": [
            {
                "name": "Linux", 
                "step_number": 0, 
                "version": "", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/allrefs.txt", 
                        "filename": "allrefs.txt"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/human_glycan_evidence.csv", 
                        "filename": "human_glycan_evidence.csv"
                    }
                ], 
                "prerequisite": [
                    {
                        "name": "", 
                        "uri": {
                            "uri": "", 
                            "filename": ""
                        }
                    }
                ], 
                "description": "The columns \"evidence\" and \"uniprotkb_acc_canonical\" was extracted from the source file and was sorted and made unique."
            }, 
            {
                "name": "python", 
                "step_number": 1, 
                "version": "", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/human_glycan_evidence.csv", 
                        "filename": "human_glycan_evidence.csv"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_glycan_citations.csv", 
                        "filename": "human_glycan_citations.csv"
                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/logs/human_glycan_citations.log", 
                        "filename": "human_glycan_citations.log"
                    }
                ], 
                "prerequisite": [], 
                "description": "The medline records for the PMIDs extracted from output file of step 2 were downloaded and data such as journal name, title and publication date was extracted."
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [], 
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/make-citations-table.py", 
                    "filename": "make-citations-table.py"
                }
            }
        ]
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "Publication data for the PMID's sourced from UniCarbKB"
    ], 
    "etag": "e400173f4d7750b16b487fa5847ed9c0", 
    "_id": {
        "$oid": "5cb63fe0f5c47b114b15fef6"
    }
}