{
    "object_id": "https://biocomputeobject.org/GLY_000084/1.0.13", 
    "license": "https://creativecommons.org/licenses/by/4.0/", 
    "contributors": [
        {
            "orcid": "", 
            "affiliation": "", 
            "contribution": [
                "createdBy"
            ], 
            "name": "Jeet Vora", 
            "email": "jeetvora@gwu.edu"
        }, 
        {
            "orcid": "", 
            "affiliation": "", 
            "contribution": [
                "createdBy"
            ], 
            "name": "Rahi Navelkar", 
            "email": "rsn13@gwu.edu"
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    ], 
    "created": "2019-01-23T17:21:05.953432", 
    "spec_version": "1.3.0", 
    "modified": "2019-02-19T14:12:58.828327", 
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }
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    "io_domain": {
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            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-9606-homo-sapiens-2018-11.nt", 
                    "filename": "uniprot-proteome-9606-homo-sapiens-2018-11.nt"
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            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/human_glyco-phenotype_disease_curation_list_v12-18-74.csv", 
                    "filename": "human_glyco-phenotype_disease_curation_list_v12-18-74.csv"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_idmapping.csv", 
                    "filename": "human_protein_idmapping.csv"
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        ], 
        "output_subdomain": [
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_disease.csv", 
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    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/", 
        "name": "Human Diseases", 
        "contributors": [
            {
                "affiliation": "The George Washington University", 
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                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
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            {
                "affiliation": "The George Washington University", 
                "contribution": [
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                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
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            {
                "affiliation": "The George Washington University", 
                "contribution": [
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                ], 
                "name": "Robel Kahsay", 
                "email": "rykahsay@gwu.edu"
            }, 
            {
                "affiliation": "Monarch Initiative - Oregon Health & Science University", 
                "contribution": [
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                ], 
                "name": "Jean-Philippe Gourdine", 
                "email": "gourdine@ohsu.edu"
            }
        ], 
        "created": "2019-01-23T17:21:05.953432", 
        "modified": "2019-04-23T15:37:06.441631", 
        "version": "1.0.13"
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        "keywords": [
            "disease", 
            "HPO", 
            "OMIM", 
            "Congenital Disorders of Glycosylation (CDG)", 
            "Monarch Initiative"
        ], 
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                "name": "extract-from-endpoint.py", 
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                "version": "1.0", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-9606-homo-sapiens-2018-11.nt", 
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                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/human_glyco-phenotype_disease_curation_list_v12-18-74.csv", 
                        "filename": "human_glyco-phenotype_disease_curation_list_v12-18-74.csv"
                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_idmapping.csv", 
                        "filename": "human_protein_idmapping.csv"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_disease.csv", 
                        "filename": "human_protein_disease.csv"
                    }
                ], 
                "prerequisite": [], 
                "description": "The script maps the mondo ids and omim phenotype ids to UniProtKB canonical accession to finally produce a csv file"
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [
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                "version": "2.7.5", 
                "name": "Python", 
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ], 
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py", 
                    "filename": "extract-from-endpoint.py"
                }
            }
        ]
    }, 
    "version": "1.0.5", 
    "error_domain": {
        "empirical_error": {}, 
        "algorithmic_error": {}, 
        "emperical_error": {}
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "The Human Diseases dataset contains list of human [taxid:9606] diseases as described by OMIM and Monarch Initiave database ", 
        "Online Mendelian Inheritance in Man (OMIM) is a continuously updated catalog of human genes and genetic disorders and traits, with a particular focus on the gene-phenotype relationship.", 
        "The Monarch Initiative is focused primarily on phenotype-related resources and brings in data associated with those phenotypes so that the users can begin to make connections among other biological entities of interest.", 
        "If you are using this dataset please give proper attribution to OMIM, Monarch Initiative, EMBL-EBI-UniProt and GlyGen"
    ], 
    "etag": "1d9146bfe0b94e6ef372957592402ec6", 
    "_id": {
        "$oid": "5c48e8d1f5c47b65ae4b5d3f"
    }, 
    "name": ""
}