{
    "object_id": "https://biocomputeobject.org/GLY_000028/1.0.13", 
    "license": "https://creativecommons.org/licenses/by/4.0/", 
    "contributors": [
        {
            "orcid": "", 
            "affiliation": "", 
            "contribution": [
                "createdBy"
            ], 
            "name": "Jeet Vora", 
            "email": "jeetvora@gwu.edu"
        }, 
        {
            "orcid": "", 
            "affiliation": "", 
            "contribution": [
                "createdBy"
            ], 
            "name": "Rahi Navelkar", 
            "email": "rsn13@gwu.edu"
        }
    ], 
    "created": "2019-01-23T17:21:05.895453", 
    "spec_version": "1.3.0", 
    "modified": "2019-02-21T11:48:47.500173", 
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }
                ]
            }
        }
    ], 
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/human_protein_expression_normal.csv", 
                    "filename": "human_protein_expression_normal.csv"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_idmapping.csv", 
                    "filename": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_idmapping.csv"
                }
            }
        ], 
        "output_subdomain": [
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_expression_normal.csv", 
                    "filename": "human_protein_expression_normal.csv"
                }
            }, 
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/reviewed/human_protein_expression_normal.stat.csv", 
                    "filename": "human_protein_expression_normal.stat.csv"
                }
            }
        ]
    }, 
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/", 
        "name": "Gene Expression (Normal)", 
        "contributors": [
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Robel Kahsay", 
                "email": "rykahsay@gwu.edu"
            }, 
            {
                "affiliation": "BioXpress - The George Washington University", 
                "contribution": [
                    "contributedBy"
                ], 
                "name": "BioXpress - Hayley Dingerdissen", 
                "email": "hmhamilt@gwmail.gwu.edu"
            }
        ], 
        "created": "2019-01-23T17:21:05.895453", 
        "modified": "2019-04-23T14:29:35.985132", 
        "version": "1.0.13"
    }, 
    "description_domain": {
        "keywords": [
            "normal gene expression", 
            "BioXpress", 
            "UBERON"
        ], 
        "pipeline_steps": [
            {
                "name": "extract-from-csv.py", 
                "step_number": 1, 
                "version": "1.0", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/human_protein_expression_normal.csv", 
                        "filename": "human_protein_expression_normal.csv"
                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_idmapping.csv", 
                        "filename": "human_protein_idmapping.csv"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_expression_normal.csv", 
                        "filename": "human_protein_expression_normal.csv"
                    }
                ], 
                "prerequisite": [], 
                "description": "The script extract-from-csv.py extracts the expression information and maps the UniProtKB accession/ gene name to UniProtKB canonical expression"
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [
            {
                "version": "2.7.5", 
                "name": "Python", 
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ], 
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-csv.py", 
                    "filename": "extractor/extract-from-csv.py"
                }
            }
        ]
    }, 
    "version": "1.0.5", 
    "error_domain": {
        "empirical_error": {}, 
        "algorithmic_error": {}, 
        "emperical_error": {}
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "The Gene Expression (Normal) dataset contains the normal expression information of human [taxid:9606] genes from BioXpress database. The GlyGen Interface shows the normal gene expression information for select UBERON ids only which are mapped to corresponding DOIDs and have gene expression in cancer information for those DOID. For more gene expression information of other UBERON IDs (tissues) for a given gene, please refer to BioXpress - https://hive.biochemistry.gwu.edu/bioxpress.", 
        "BioXpress is a gene/miRNA expression and disease association database with expression levels mapped to genes or miRNAs. The current version of BioXpress contains only genes associated with cancer.", 
        "If you are using this dataset please give proper attribution to GlyGen and BioXpress"
    ], 
    "etag": "4c9cd5003fdf8bab3c0041e9830beb29", 
    "_id": {
        "$oid": "5c48e8d1f5c47b65ae4b5d07"
    }, 
    "name": "Gene Expression (Normal)"
}