{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/allrefs.txt",
                    "filename": "mouse_glycan_evidence.csv"
                }
            },
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/mouse_glycan_evidence.csv",
                    "filename": "mouse_glycan_evidence.csv"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "",
                "uri": {
                    "uri": "http://data.glygen.org/datasets/reviewed/mouse_glycan_citations.csv",
                    "filename": "mouse_glycan_citations.csv"
                }
            },
            {
                "mediatype": "",
                "uri": {
                    "uri": "http://data.glygen.org/datasets/reviewed/mouse_glycan_citations.csv",
                    "filename": "mouse_glycan_evidence.csv"
                }
            },
            {
                "mediatype": "",
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/logs/mouse_glycan_citations.log",
                    "filename": "mouse_glycan_citations.log"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "http://data.glygen.org/datasets/reviewed/mouse_glycan_citations.stat.csv",
                    "filename": "mouse_glycan_citations.stat.csv"
                }
            }
        ]
    },
    "spec_version": "1.3.0",
    "object_id": "https://biocomputeobject.org/GLY_000141/v-1.0.13",
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "Mouse Glycan Citations",
        "contributors": [
            {
                "affiliation": "George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Rahi Navelkar",
                "email": "rsn13@gwu.edu"
            },
            {
                "affiliation": "George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Brian Fotchman",
                "email": "bfochtman@gwu.edu"
            }
        ],
        "created": "2019-04-16T17:02:49.845204",
        "modified": "2019-04-18T16:07:31.921693",
        "version": "v-1.0.13"
    },
    "description_domain": {
        "keywords": [
            "citations"
        ],
        "pipeline_steps": [
            {
                "name": "Linux",
                "step_number": 0,
                "version": "",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/allrefs.txt",
                        "filename": "allrefs.txt"
                    }
                ],
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/mouse_glycan_evidence.csv",
                        "filename": "mouse_glycan_evidence.csv"
                    }
                ],
                "prerequisite": [
                    {
                        "name": "",
                        "uri": {
                            "uri": "",
                            "filename": ""
                        }
                    }
                ],
                "description": "The columns \"evidence\" and \"uniprotkb_acc_canonical\" was extracted from the source file and was sorted and made unique."
            },
            {
                "name": "python",
                "step_number": 1,
                "version": "",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/mouse_glycan_evidence.csv",
                        "filename": "mouse_glycan_evidence.csv"
                    }
                ],
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/mouse_glycan_citations.csv",
                        "filename": "mouse_glycan_citations.csv"
                    },
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/logs/mouse_glycan_citations.log",
                        "filename": "mouse_glycan_citations.log"
                    }
                ],
                "prerequisite": [],
                "description": "The medline records for the PMIDs extracted from output file of step 2 were downloaded and data such as journal name, title and publication date was extracted."
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/make-citations-table.py",
                    "filename": "make-citations-table.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "value": "",
            "param": ""
        }
    ],
    "usability_domain": [
        "Publication data for the PMID's sourced from UniCarbKB"
    ],
    "etag": "bdd232932c6fba8850ff2a5757958373",
    "_id": {
        "$oid": "5cb642f9f5c47b1297d2df1f"
    }
}