{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/uniprot-proteome-10090-mus-musculus-2018-11.nt",
                    "filename": "uniprot-proteome-10090-mus-musculus-2018-11.nt"
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            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/mouse_protein_idmapping.csv",
                    "filename": "mouse_protein_idmapping.csv"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/mouse_protein_xref_orthodb.csv",
                    "filename": "mouse_protein_xref_orthodb.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/mouse_protein_xref_orthodb.stat.csv",
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    "spec_version": "1.3.0",
    "object_id": "https://biocomputeobject.org/GLY_000116/v-1.0.13",
    "extension_domain": [
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            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    }
                ]
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        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "Mouse UniProtKB Xref OrthoDB",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Rahi Navelkar",
                "email": "rsn13@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Maria Martin",
                "email": "martin@ebi.ac.uk"
            },
            {
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Leyla Garcia",
                "email": "ljgarcia@ebi.ac.uk"
            },
            {
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Preethi Vasudev",
                "email": "pvasudev@ebi.ac.uk"
            }
        ],
        "created": "2019-03-15T14:58:32.333977",
        "modified": "2019-04-23T17:23:27.103831",
        "version": "v-1.0.13"
    },
    "description_domain": {
        "keywords": [
            "ortholog",
            "OrthoDB"
        ],
        "pipeline_steps": [
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                "name": "extract-from-endpoint.py",
                "step_number": 1,
                "version": "1.0",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/source/uniprot-proteome-10090-mus-musculus-2018-11.nt",
                        "filename": "uniprot-proteome-10090-mus-musculus-2018-11.nt"
                    },
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/mouse_protein_idmapping.csv",
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                ],
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.0.13/reviewed/mouse_protein_xref_orthodb.csv",
                        "filename": "mouse_protein_xref_orthodb.csv"
                    }
                ],
                "prerequisite": [],
                "description": "The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
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                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py",
                    "filename": "extract-from-endpoint.py"
                }
            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {},
        "emperical_error": {}
    },
    "parametric_domain": [
        {
            "step": "",
            "value": "",
            "param": ""
        }
    ],
    "usability_domain": [
        "The Mouse UniprotKB Xref OrthoDB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers",
        "OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology",
        "The dataset is derived from 2018-11 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProt and GlyGen"
    ],
    "etag": "44a03daa7391abee3f986dd381fa8f95",
    "_id": {
        "$oid": "5c8bf5d8f5c47b57d9c431ba"
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}