[ { "id": "Q9SKT1-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "Q9SKT1-1", "length": 336, "uniprot_id": "ERF53_ARATH", "protein_name": "Ethylene-responsive transcription factor ERF053", "refseq_ac": "NP_179685", "refseq_name": "Integrase-type DNA-binding superfamily protein", "gene_name": "ERF053", "gene_names_uniprotkb": "ERF053; F5H14.15", "gene_names_refseq": "AtERF53; ERF domain 53; ERF53; F5H14.15; F5H14_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SKT1", "url": "https://www.uniprot.org/uniprotkb/Q9SKT1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGKYKDSGPGSDMWLGDASS", "down_seq": "SPRSLRKTRTFDRHNPYLVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr55" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "41", "end_pos": "41" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9SKT1-1.41.41", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9SKT1-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9SKT1-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9SKT1-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9SKT1-1.59.59", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SKT1-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "Q9SKT1-1", "length": 336, "uniprot_id": "ERF53_ARATH", "protein_name": "Ethylene-responsive transcription factor ERF053", "refseq_ac": "NP_179685", "refseq_name": "Integrase-type DNA-binding superfamily protein", "gene_name": "ERF053", "gene_names_uniprotkb": "ERF053; F5H14.15", "gene_names_refseq": "AtERF53; ERF domain 53; ERF53; F5H14.15; F5H14_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SKT1", "url": "https://www.uniprot.org/uniprotkb/Q9SKT1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKYKDSGPGSDMWLGDASST", "down_seq": "PRSLRKTRTFDRHNPYLVSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "41", "end_pos": "41" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9SKT1-1.41.41", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9SKT1-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9SKT1-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9SKT1-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9SKT1-1.59.59", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SKT1-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "Q9SKT1-1", "length": 336, "uniprot_id": "ERF53_ARATH", "protein_name": "Ethylene-responsive transcription factor ERF053", "refseq_ac": "NP_179685", "refseq_name": "Integrase-type DNA-binding superfamily protein", "gene_name": "ERF053", "gene_names_uniprotkb": "ERF053; F5H14.15", "gene_names_refseq": "AtERF53; ERF domain 53; ERF53; F5H14.15; F5H14_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SKT1", "url": "https://www.uniprot.org/uniprotkb/Q9SKT1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDSGPGSDMWLGDASSTSPR", "down_seq": "LRKTRTFDRHNPYLVSSYAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SKT1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SKT1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser59" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "41", "end_pos": "41" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9SKT1-1.41.41", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9SKT1-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9SKT1-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9SKT1-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9SKT1-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SRQ3-1.101.101", "start_pos": 101, "end_pos": 101, "uniprot_canonical_ac": "Q9SRQ3-1", "length": 248, "uniprot_id": "PE191_ARATH", "protein_name": "Peroxisome biogenesis protein 19-1", "refseq_ac": "NP_186999", "refseq_name": "peroxin 19-1", "gene_name": "PEX19-1", "gene_names_uniprotkb": "PEX19-1; T21P5.9", "gene_names_refseq": "AtPEX19-1; PEX19-1; T21P5.9; T21P5_9; peroxin 19-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SRQ3", "url": "https://www.uniprot.org/uniprotkb/Q9SRQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SRQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SRQ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SRQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SRQ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EALDKLREQTRETVKGLESI", "down_seq": "SKQLPASDDDGMVEDFLKQF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SRQ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SRQ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser101" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9SS47", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9SS47" }, { "database": "O-GlcNAc Atlas", "id": "Q9SS47", "url": "https://oglcnac.org/atlas/detail/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SS47", "url": "https://oglcnac.org/atlas/detail/Q9SS47", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STMSSPVPRNRTPDSHLVGR", "down_seq": "TASGLPPIGTRVGPVEKKNT", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser314", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9SS47", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9SS47" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9SS47-1.294.294", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q9SS47-1.297.297", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9SS47-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9SS47-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9SS47-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9SS47-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9SS47", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9SS47" }, { "database": "O-GlcNAc Atlas", "id": "Q9SS47", "url": "https://oglcnac.org/atlas/detail/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SS47", "url": "https://oglcnac.org/atlas/detail/Q9SS47", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TMSSPVPRNRTPDSHLVGRS", "down_seq": "ASGLPPIGTRVGPVEKKNTF", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr315", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9SS47", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9SS47" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9SS47-1.297.297", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q9SS47-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9SS47-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9SS47-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9SS47-1.314.314", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.457.457", "start_pos": 457, "end_pos": 457, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9SS47", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9SS47" }, { "database": "O-GlcNAc Atlas", "id": "Q9SS47", "url": "https://oglcnac.org/atlas/detail/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SS47", "url": "https://oglcnac.org/atlas/detail/Q9SS47", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKRTSSSASLYSTSDHSRLG", "down_seq": "VGLSDVNIRNGNINGTDFST", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser457", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9SS47", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9SS47" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Ser457" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9SS47-1.442.442", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9SS47", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9SS47" }, { "database": "O-GlcNAc Atlas", "id": "Q9SS47", "url": "https://oglcnac.org/atlas/detail/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SS47", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9SS47", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9SS47", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9SS47" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q9SS47-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "", "down_seq": "NVDLEDRFQRELESLLQQHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser20" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9SS47-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" }, { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGREDLIGLSGYSGLGPRRK", "down_seq": "FADILQEGLERDAALGSQLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser225" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q9SS47-1.245.245", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.245.245", "start_pos": 245, "end_pos": 245, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFADILQEGLERDAALGSQL", "down_seq": "RPASCNTFRDMKDAAVLSNF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser245" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9SS47-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9SS47-1.249.249", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9SS47-1.252.252", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ILQEGLERDAALGSQLSRPA", "down_seq": "CNTFRDMKDAAVLSNFSAGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser249" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9SS47-1.245.245", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9SS47-1.252.252", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.252.252", "start_pos": 252, "end_pos": 252, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EGLERDAALGSQLSRPASCN", "down_seq": "FRDMKDAAVLSNFSAGGFDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr252" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9SS47-1.245.245", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9SS47-1.249.249", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.294.294", "start_pos": 294, "end_pos": 294, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAFHDSLHSTAKNSPNTMLG", "down_seq": "TMSSPVPRNRTPDSHLVGRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser294" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9SS47-1.297.297", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9SS47-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9SS47-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9SS47-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9SS47-1.314.314", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.297.297", "start_pos": 297, "end_pos": 297, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HDSLHSTAKNSPNTMLGSTM", "down_seq": "SPVPRNRTPDSHLVGRSTAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser297" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9SS47-1.294.294", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9SS47-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9SS47-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9SS47-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9SS47-1.314.314", "categories": [ "glycosylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9SS47-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.298.298", "start_pos": 298, "end_pos": 298, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSLHSTAKNSPNTMLGSTMS", "down_seq": "PVPRNRTPDSHLVGRSTASG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser298" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9SS47-1.294.294", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9SS47-1.297.297", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9SS47-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9SS47-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9SS47-1.314.314", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9SS47-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.305.305", "start_pos": 305, "end_pos": 305, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" }, { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KNSPNTMLGSTMSSPVPRNR", "down_seq": "PDSHLVGRSTASGLPPIGTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" }, { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr305" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9SS47-1.294.294", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9SS47-1.297.297", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9SS47-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9SS47-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9SS47-1.314.314", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9SS47-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.308.308", "start_pos": 308, "end_pos": 308, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PNTMLGSTMSSPVPRNRTPD", "down_seq": "HLVGRSTASGLPPIGTRVGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ], "site_lbl": "Ser308" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9SS47-1.294.294", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9SS47-1.297.297", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9SS47-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9SS47-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9SS47-1.314.314", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9SS47-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.442.442", "start_pos": 442, "end_pos": 442, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLGASTVGSHGQVNIPKRTS", "down_seq": "SASLYSTSDHSRLGSVGLSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser442" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q9SS47-1.457.457", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.58.58", "start_pos": 58, "end_pos": 58, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" }, { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QHRNQQSFGRERERDIDVHR", "down_seq": "GSAPPTVEGLLRAMDNQYLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser58" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9SS47-1.60.60", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9SS47-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.60.60", "start_pos": 60, "end_pos": 60, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" }, { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNQQSFGRERERDIDVHRSG", "down_seq": "APPTVEGLLRAMDNQYLNNN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser60" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9SS47-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9SS47-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SS47-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q9SS47-1", "length": 1003, "uniprot_id": "PUM4_ARATH", "protein_name": "Pumilio homolog 4", "refseq_ac": "NP_187647", "refseq_name": "pumilio 4", "gene_name": "APUM4", "gene_names_uniprotkb": "APUM4; F14P13.4", "gene_names_refseq": "APUM4; PUM4; pumilio 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9SS47", "url": "https://www.uniprot.org/uniprotkb/Q9SS47" }, { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SFGRERERDIDVHRSGSAPP", "down_seq": "VEGLLRAMDNQYLNNNNSDH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SS47", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SS47" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr64" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "457", "end_pos": "457" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9SS47-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9SS47-1.60.60", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STX3-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "Q9STX3-1", "length": 151, "uniprot_id": "GID2_ARATH", "protein_name": "F-box protein GID2", "refseq_ac": "NP_194152", "refseq_name": "F-box family protein", "gene_name": "GID2", "gene_names_uniprotkb": "GID2; SLY1; T22A6.40", "gene_names_refseq": "SLEEPY1; SLY1; T22A6.40; T22A6_40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STX3", "url": "https://www.uniprot.org/uniprotkb/Q9STX3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis F-box protein SLEEPY1 targets gibberellin signaling repressors for gibberellin-induced degradation.", "journal": "The Plant cell", "date": "2004-06", "authors": "Dill Alyssa, Thomas Stephen G, Hu Jianhong, Steber Camille M, Sun Tai-Ping", "evidence": [ { "database": "UniProtKB", "id": "Q9STX3", "url": "https://www.uniprot.org/uniprotkb/Q9STX3" } ], "reference": [ { "type": "PubMed", "id": "15155881", "url": "https://glygen.org/publication/PubMed/15155881" } ] }, { "title": "The Arabidopsis mutant sleepy1gar2-1 protein promotes plant growth by increasing the affinity of the SCFSLY1 E3 ubiquitin ligase for DELLA protein substrates.", "journal": "The Plant cell", "date": "2004-06", "authors": "Fu Xiangdong, Richards Donald E, Fleck Barbara, Xie Daoxin, Burton Nicolas, Harberd Nicholas P", "evidence": [ { "database": "UniProtKB", "id": "Q9STX3", "url": "https://www.uniprot.org/uniprotkb/Q9STX3" } ], "reference": [ { "type": "PubMed", "id": "15161962", "url": "https://glygen.org/publication/PubMed/15161962" } ] } ], "crossref": [ { "id": "Q9STX3", "url": "https://www.uniprot.org/uniprotkb/Q9STX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15155881", "url": "https://glygen.org/publication/PubMed/15155881", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15161962", "url": "https://glygen.org/publication/PubMed/15161962", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "ARFGKDELKLTLSLLSIRYY", "down_seq": "KMSFTKRPLPESK", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In gar2-1/sly1-d; gain of function allele that promotes plant growth by increasing the affinity with DELLA protein substrates.", "evidence": [ { "database": "UniProtKB", "id": "Q9STX3", "url": "https://www.uniprot.org/uniprotkb/Q9STX3" }, { "database": "PubMed", "id": "15155881", "url": "https://glygen.org/publication/PubMed/15155881" }, { "database": "PubMed", "id": "15161962", "url": "https://glygen.org/publication/PubMed/15161962" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "138", "end_pos": "138" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SX27-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "Q9SX27-1", "length": 452, "uniprot_id": "PAN_ARATH", "protein_name": "Transcription factor PERIANTHIA", "refseq_ac": "NP_177031", "refseq_name": "bZIP transcription factor family protein", "gene_name": "PAN", "gene_names_uniprotkb": "PAN; F24J5.12", "gene_names_refseq": "F24J5.12; F24J5_12; PAN; PERIANTHIA; TGA8; TGACG sequence-specific binding protein 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SX27", "url": "https://www.uniprot.org/uniprotkb/Q9SX27" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nuclear activity of ROXY1, a glutaredoxin interacting with TGA factors, is required for petal development in Arabidopsis thaliana.", "journal": "The Plant cell", "date": "2009-02", "authors": "Li Shutian, Lauri Andrea, Ziemann Mark, Busch Andrea, Bhave Mrinal, Zachgo Sabine", "evidence": [ { "database": "UniProtKB", "id": "Q9SX27", "url": "https://www.uniprot.org/uniprotkb/Q9SX27" } ], "reference": [ { "type": "PubMed", "id": "19218396", "url": "https://glygen.org/publication/PubMed/19218396" } ] } ], "crossref": [ { "id": "Q9SX27", "url": "https://www.uniprot.org/uniprotkb/Q9SX27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19218396", "url": "https://glygen.org/publication/PubMed/19218396", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "LLKILGNHVDPLTDQQLIGI", "down_seq": "NLQQSSQQAEDALSQGMEAL", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Abolishes function in flower development.", "evidence": [ { "database": "UniProtKB", "id": "Q9SX27", "url": "https://www.uniprot.org/uniprotkb/Q9SX27" }, { "database": "PubMed", "id": "19218396", "url": "https://glygen.org/publication/PubMed/19218396" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "340", "end_pos": "340" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SX55-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "Q9SX55-1", "length": 310, "uniprot_id": "TO402_ARATH", "protein_name": "Probable mitochondrial import receptor subunit TOM40-2", "refseq_ac": "NP_175457", "refseq_name": "Eukaryotic porin family protein", "gene_name": "TOM40-2", "gene_names_uniprotkb": "TOM40-2; F14I3.2", "gene_names_refseq": "F14I3.2; F14I3_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SX55", "url": "https://www.uniprot.org/uniprotkb/Q9SX55" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NQKFFLSHSILMGPTEVPNP", "down_seq": "PSSEIIKIPTANYDFGAGFI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr82", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9SYT0-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Peroxidase activity of annexin 1 from Arabidopsis thaliana.", "journal": "Biochemical and biophysical research communications", "date": "2005-10-28", "authors": "Gorecka Karolina M, Konopka-Postupolska Dorota, Hennig Jacek, Buchet Rene, Pikula Slawomir", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "16153598", "url": "https://glygen.org/publication/PubMed/16153598" } ] } ], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16153598", "url": "https://glygen.org/publication/PubMed/16153598", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "LRTAFEGWGTNEDLIISILA", "down_seq": "RSAEQRKVIRQAYHETYGED", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of peroxidase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "PubMed", "id": "16153598", "url": "https://glygen.org/publication/PubMed/16153598" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYT0-1.100.100", "start_pos": 100, "end_pos": 100, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WTLEPGERDALLANEATKRW", "down_seq": "SSNQVLMEVACTRTSTQLLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "site_lbl": "Thr100" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9SYT0-1.102.102", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9SYT0-1.112.112", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9SYT0-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Yak1 protein (AtYak1) is a dual specificity protein kinase.", "journal": "FEBS letters", "date": "2015-10-24", "authors": "Kim Dongjin, Ntui Valentine Otang, Zhang Nianshu, Xiong Liming", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" } ] } ], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEPGERDALLANEATKRWTS", "down_seq": "NQVLMEVACTRTSTQLLHAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" }, { "database": "IntAct", "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "site_lbl": "Ser102" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9SYT0-1.100.100", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9SYT0-1.112.112", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYT0-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Yak1 protein (AtYak1) is a dual specificity protein kinase.", "journal": "FEBS letters", "date": "2015-10-24", "authors": "Kim Dongjin, Ntui Valentine Otang, Zhang Nianshu, Xiong Liming", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" } ] } ], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ANEATKRWTSSNQVLMEVAC", "down_seq": "RTSTQLLHARQAYHARYKKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" }, { "database": "IntAct", "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "site_lbl": "Thr112" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9SYT0-1.100.100", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9SYT0-1.102.102", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9SYT0-1.129.129", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYT0-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VACTRTSTQLLHARQAYHAR", "down_seq": "KKSLEEDVAHHTTGDFRKLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "site_lbl": "Tyr129" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9SYT0-1.112.112", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9SYT0-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Yak1 protein (AtYak1) is a dual specificity protein kinase.", "journal": "FEBS letters", "date": "2015-10-24", "authors": "Kim Dongjin, Ntui Valentine Otang, Zhang Nianshu, Xiong Liming", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" } ] } ], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDVAHHTTGDFRKLLVSLVT", "down_seq": "YRYEGDEVNMTLAKQEAKLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" }, { "database": "IntAct", "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "site_lbl": "Ser155" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9SYT0-1.156.156", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYT0-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Yak1 protein (AtYak1) is a dual specificity protein kinase.", "journal": "FEBS letters", "date": "2015-10-24", "authors": "Kim Dongjin, Ntui Valentine Otang, Zhang Nianshu, Xiong Liming", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" } ] } ], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DVAHHTTGDFRKLLVSLVTS", "down_seq": "RYEGDEVNMTLAKQEAKLVH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" }, { "database": "IntAct", "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "site_lbl": "Tyr156" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9SYT0-1.155.155", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYT0-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Yak1 protein (AtYak1) is a dual specificity protein kinase.", "journal": "FEBS letters", "date": "2015-10-24", "authors": "Kim Dongjin, Ntui Valentine Otang, Zhang Nianshu, Xiong Liming", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" } ] } ], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ALTRIVTTRAEIDLKVIGEE", "down_seq": "QRRNSIPLEKAITKDTRGDY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" }, { "database": "IntAct", "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "site_lbl": "Tyr284" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9SYT0-1.289.289", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYT0-1.289.289", "start_pos": 289, "end_pos": 289, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Yak1 protein (AtYak1) is a dual specificity protein kinase.", "journal": "FEBS letters", "date": "2015-10-24", "authors": "Kim Dongjin, Ntui Valentine Otang, Zhang Nianshu, Xiong Liming", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTTRAEIDLKVIGEEYQRRN", "down_seq": "IPLEKAITKDTRGDYEKMLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" }, { "database": "PubMed", "id": "26452715", "url": "https://glygen.org/publication/PubMed/26452715" }, { "database": "IntAct", "id": "Q9SYT0", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SYT0*" }, { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser289" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9SYT0-1.284.284", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SYT0-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "Q9SYT0-1", "length": 317, "uniprot_id": "ANXD1_ARATH", "protein_name": "Annexin D1", "refseq_ac": "NP_174810", "refseq_name": "annexin 1", "gene_name": "ANN1", "gene_names_uniprotkb": "ANN1; ANNAT1; ANX23-ATH; ATOXY5; F14D7.2; OXY5", "gene_names_refseq": "ANN1; ANNAT1; ANNEXIN A1; ANNEXIN; ATOXY5; AtANN1; F14D7.2; F14D7_2; OXY5; annexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SYT0", "url": "https://www.uniprot.org/uniprotkb/Q9SYT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RQAYHETYGEDLLKTLDKEL", "down_seq": "NDFERAILLWTLEPGERDAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SYT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SYT0" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser70" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "102", "end_pos": "102" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZE4-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "Q9SZE4-1", "length": 219, "uniprot_id": "VP322_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 32 homolog 2", "refseq_ac": "NP_001078468", "refseq_name": "SNF7 family protein", "gene_name": "VPS32.2", "gene_names_uniprotkb": "VPS32.2; CHMP4-2; F19B15.190; SNF7.1; SNF7B", "gene_names_refseq": "F19B15.190; F19B15_190; SNF7.1; VPS32", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZE4", "url": "https://www.uniprot.org/uniprotkb/Q9SZE4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9SZE4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZE4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MMNRLFGKPKQEANALQ", "down_seq": "LDKLNETLEMLEKKEKVLLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SZE4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZE4" } ], "site_lbl": "Thr18" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "25", "end_pos": "25" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q9SZE4-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9SZE4-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "Q9SZE4-1", "length": 219, "uniprot_id": "VP322_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 32 homolog 2", "refseq_ac": "NP_001078468", "refseq_name": "SNF7 family protein", "gene_name": "VPS32.2", "gene_names_uniprotkb": "VPS32.2; CHMP4-2; F19B15.190; SNF7.1; SNF7B", "gene_names_refseq": "F19B15.190; F19B15_190; SNF7.1; VPS32", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZE4", "url": "https://www.uniprot.org/uniprotkb/Q9SZE4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9SZE4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZE4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LFGKPKQEANALQTLDKLNE", "down_seq": "LEMLEKKEKVLLKKAGAEVE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SZE4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZE4" } ], "site_lbl": "Thr25" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "25", "end_pos": "25" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9SZE4-1.18.18", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9SZN7-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q9SZN7-1", "length": 153, "uniprot_id": "HIP26_ARATH", "protein_name": "Heavy metal-associated isoprenylated plant protein 26", "refseq_ac": "NP_001320160", "refseq_name": "farnesylated protein 6", "gene_name": "HIPP26", "gene_names_uniprotkb": "HIPP26; F20M13.140; FP6", "gene_names_refseq": "ATFP6; F20M13.140; F20M13_140; FP6; HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26; HIPP26; farnesylated protein 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29.", "journal": "Plant molecular biology", "date": "2009-01", "authors": "Barth Olaf, Vogt Sebastian, Uhlemann Ria, Zschiesche Wiebke, Humbeck Klaus", "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "reference": [ { "type": "PubMed", "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936" } ] } ], "crossref": [ { "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "RASSTEVRYTTAFSDENPAA", "down_seq": "VVM", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "G", "comment": "Loss of prenylation and localization to membrane.", "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" }, { "database": "PubMed", "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "39", "end_pos": "39" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "133", "end_pos": "133" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9SZN7-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZN7-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "Q9SZN7-1", "length": 153, "uniprot_id": "HIP26_ARATH", "protein_name": "Heavy metal-associated isoprenylated plant protein 26", "refseq_ac": "NP_001320160", "refseq_name": "farnesylated protein 6", "gene_name": "HIPP26", "gene_names_uniprotkb": "HIPP26; F20M13.140; FP6", "gene_names_refseq": "ATFP6; F20M13.140; F20M13_140; FP6; HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26; HIPP26; farnesylated protein 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29.", "journal": "Plant molecular biology", "date": "2009-01", "authors": "Barth Olaf, Vogt Sebastian, Uhlemann Ria, Zschiesche Wiebke, Humbeck Klaus", "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "reference": [ { "type": "PubMed", "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936" } ] } ], "crossref": [ { "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "GHKIKKRKQLQTVEIKVKMD", "down_seq": "EGCERKVRRSVEGMKGVSSV", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "G", "comment": "In HIPP26-4; loss of interaction with HB29; when associated with G-39.", "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" }, { "database": "PubMed", "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "39", "end_pos": "39" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "133", "end_pos": "133" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9SZN7-1.39.39", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZN7-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "Q9SZN7-1", "length": 153, "uniprot_id": "HIP26_ARATH", "protein_name": "Heavy metal-associated isoprenylated plant protein 26", "refseq_ac": "NP_001320160", "refseq_name": "farnesylated protein 6", "gene_name": "HIPP26", "gene_names_uniprotkb": "HIPP26; F20M13.140; FP6", "gene_names_refseq": "ATFP6; F20M13.140; F20M13_140; FP6; HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26; HIPP26; farnesylated protein 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29.", "journal": "Plant molecular biology", "date": "2009-01", "authors": "Barth Olaf, Vogt Sebastian, Uhlemann Ria, Zschiesche Wiebke, Humbeck Klaus", "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "reference": [ { "type": "PubMed", "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936" } ] } ], "crossref": [ { "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "IKKRKQLQTVEIKVKMDCEG", "down_seq": "ERKVRRSVEGMKGVSSVTLE", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "G", "comment": "In HIPP26-4; loss of interaction with HB29; when associated with G-36.", "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" }, { "database": "PubMed", "id": "18974936", "url": "https://glygen.org/publication/PubMed/18974936" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "39", "end_pos": "39" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "133", "end_pos": "133" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9SZN7-1.36.36", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZN7-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "Q9SZN7-1", "length": 153, "uniprot_id": "HIP26_ARATH", "protein_name": "Heavy metal-associated isoprenylated plant protein 26", "refseq_ac": "NP_001320160", "refseq_name": "farnesylated protein 6", "gene_name": "HIPP26", "gene_names_uniprotkb": "HIPP26; F20M13.140; FP6", "gene_names_refseq": "ATFP6; F20M13.140; F20M13_140; FP6; HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26; HIPP26; farnesylated protein 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPYDVVAHPYAAGVYDKKAP", "down_seq": "GYVRRVDDPGVSQLARASST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser114" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "39", "end_pos": "39" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "133", "end_pos": "133" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q9SZN7-1.126.126", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9SZN7-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZN7-1.126.126", "start_pos": 126, "end_pos": 126, "uniprot_canonical_ac": "Q9SZN7-1", "length": 153, "uniprot_id": "HIP26_ARATH", "protein_name": "Heavy metal-associated isoprenylated plant protein 26", "refseq_ac": "NP_001320160", "refseq_name": "farnesylated protein 6", "gene_name": "HIPP26", "gene_names_uniprotkb": "HIPP26; F20M13.140; FP6", "gene_names_refseq": "ATFP6; F20M13.140; F20M13_140; FP6; HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26; HIPP26; farnesylated protein 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GVYDKKAPSGYVRRVDDPGV", "down_seq": "QLARASSTEVRYTTAFSDEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser126" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "39", "end_pos": "39" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "133", "end_pos": "133" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9SZN7-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9SZN7-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZN7-1.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "Q9SZN7-1", "length": 153, "uniprot_id": "HIP26_ARATH", "protein_name": "Heavy metal-associated isoprenylated plant protein 26", "refseq_ac": "NP_001320160", "refseq_name": "farnesylated protein 6", "gene_name": "HIPP26", "gene_names_uniprotkb": "HIPP26; F20M13.140; FP6", "gene_names_refseq": "ATFP6; F20M13.140; F20M13_140; FP6; HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26; HIPP26; farnesylated protein 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZN7", "url": "https://www.uniprot.org/uniprotkb/Q9SZN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSGYVRRVDDPGVSQLARAS", "down_seq": "TEVRYTTAFSDENPAACVVM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SZN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZN7" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser133" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "39", "end_pos": "39" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "133", "end_pos": "133" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9SZN7-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9SZN7-1.126.126", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9SZN7-1.150.150", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZU1-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "Q9SZU1-1", "length": 501, "uniprot_id": "C81F4_ARATH", "protein_name": "Cytochrome P450 81F4", "refseq_ac": "NP_195457", "refseq_name": "cytochrome P450, family 81, subfamily F, polypeptide 4", "gene_name": "CYP81F4", "gene_names_uniprotkb": "CYP81F4; F6G17.60", "gene_names_refseq": "''cytochrome P450; CYP81F4; F6G17.60; F6G17_60; cytochrome P450; family 81; polypeptide 4''; polypeptide 4; subfamily F", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZU1", "url": "https://www.uniprot.org/uniprotkb/Q9SZU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SZU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZU1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9SZU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZU1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YTTIATTSYGDHWRNLRRIC", "down_seq": "LEIVSSKRLANFLHIRKEEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SZU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZU1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser132" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "488", "end_pos": "488" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZU1-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "Q9SZU1-1", "length": 501, "uniprot_id": "C81F4_ARATH", "protein_name": "Cytochrome P450 81F4", "refseq_ac": "NP_195457", "refseq_name": "cytochrome P450, family 81, subfamily F, polypeptide 4", "gene_name": "CYP81F4", "gene_names_uniprotkb": "CYP81F4; F6G17.60", "gene_names_refseq": "''cytochrome P450; CYP81F4; F6G17.60; F6G17_60; cytochrome P450; family 81; polypeptide 4''; polypeptide 4; subfamily F", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZU1", "url": "https://www.uniprot.org/uniprotkb/Q9SZU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9SZU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZU1" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q9SZU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZU1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDRLIEESDIANLPYLQNVV", "down_seq": "ETLRLHPAAPVLVPRSTAED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SZU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZU1" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser353" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "488", "end_pos": "488" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SZU1-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "Q9SZU1-1", "length": 501, "uniprot_id": "C81F4_ARATH", "protein_name": "Cytochrome P450 81F4", "refseq_ac": "NP_195457", "refseq_name": "cytochrome P450, family 81, subfamily F, polypeptide 4", "gene_name": "CYP81F4", "gene_names_uniprotkb": "CYP81F4; F6G17.60", "gene_names_refseq": "''cytochrome P450; CYP81F4; F6G17.60; F6G17_60; cytochrome P450; family 81; polypeptide 4''; polypeptide 4; subfamily F", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SZU1", "url": "https://www.uniprot.org/uniprotkb/Q9SZU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9SZU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSEGPGMAMRMMVPLRALCK", "down_seq": "RPIMNKLPAYTKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SZU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SZU1" } ], "site_lbl": "Thr488" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "488", "end_pos": "488" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9XIE2-1.1357.1357", "start_pos": 1357, "end_pos": 1357, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways.", "journal": "Plant physiology", "date": "2015-07", "authors": "Lu Xunli, Dittgen Jan, Pi\u015blewska-Bednarek Mariola, Molina Antonio, Schneider Bernd, Svato\u0161 Ale\u0161, Doubsk\u00fd Jan, Schneeberger Korbinian, Weigel Detlef, Bednarek Pawe\u0142, Schulze-Lefert Paul", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163" } ] }, { "title": "The Arabidopsis PLEIOTROPIC DRUG RESISTANCE8/ABCG36 ATP binding cassette transporter modulates sensitivity to the auxin precursor indole-3-butyric acid.", "journal": "The Plant cell", "date": "2009-07", "authors": "Strader Lucia C, Bartel Bonnie", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "19648296", "url": "https://glygen.org/publication/PubMed/19648296" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19648296", "url": "https://glygen.org/publication/PubMed/19648296", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "FLYWTYYGMMTVSLTPNQQV", "down_seq": "SIFASAFYGIFNLFSGFFIP", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "V", "comment": "In pdr8-115 and pen3-6; slight overaccumulation in leaves of 4-O-beta-D-glucosyl-indol-3-yl formamide (4OGlcI3F) upon Blumeria graminis conidiospore inoculation, a pathogen-inducible tryptophan-derived compound, which biosynthesis is dependent on the PEN2 metabolic pathway. Hypersensitivity to root growth inhibition by 2,4-dichlorophenoxybutyric acid (2,4-DB), an analog of indole 3-butyric acid (IBA), an auxin precursor. Fully defective in preinvasive defense to nonadapted powdery mildews (e.g. Blumeria graminis and Erysiphe pisi). Normal susceptibility to the host-adapted pathogen Golovinomyces orontii associated with normal salicylic acid (SA), and pathogen-inducible hydrogen peroxides levels. Retained microbe-associated molecular patterns (MAMPs)-induced (e.g. flg22) callose deposition. Suppressor of a subset of ibr5 mutant phenotypes including IBA sensitivity but without suppressing ibr5 resistance to indole-3-acetic acid (IAA). Normal accumulation (at protein level).", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163" }, { "database": "PubMed", "id": "19648296", "url": "https://glygen.org/publication/PubMed/19648296" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways.", "journal": "Plant physiology", "date": "2015-07", "authors": "Lu Xunli, Dittgen Jan, Pi\u015blewska-Bednarek Mariola, Molina Antonio, Schneider Bernd, Svato\u0161 Ale\u0161, Doubsk\u00fd Jan, Schneeberger Korbinian, Weigel Detlef, Bednarek Pawe\u0142, Schulze-Lefert Paul", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163" } ] }, { "title": "Arabidopsis PEN3/PDR8, an ATP binding cassette transporter, contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration.", "journal": "The Plant cell", "date": "2006-03", "authors": "Stein M\u00f3nica, Dittgen Jan, S\u00e1nchez-Rodr\u00edguez Clara, Hou Bi-Huei, Molina Antonio, Schulze-Lefert Paul, Lipka Volker, Somerville Shauna", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "16473969", "url": "https://glygen.org/publication/PubMed/16473969" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16473969", "url": "https://glygen.org/publication/PubMed/16473969", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "IVGDDMMRGISGGQKKRVTT", "down_seq": "EMIVGPTKTLFMDEISTGLD", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In pen3-1; overaccumulation in leaves of 4-O-beta-D-glucosyl-indol-3-yl formamide (4OGlcI3F) upon Blumeria graminis conidiospore inoculation, a pathogen-inducible tryptophan-derived compound, which biosynthesis is dependent on the PEN2 metabolic pathway. More susceptible to the necrotrophic pathogen Plectosphaerella cucumerina, with higher frequency of fungal penetration and increased formation of elongating secondary hyphae after the first haustorium development. Fully defective in preinvasive defense to nonadapted powdery mildews (e.g. Blumeria graminis and Erysiphe pisi). Extensive leaf chlorosis and reduced fungal growth upon infection by the host-adapted pathogen Golovinomyces orontii associated with a hyperaccumulation of both free and total salicylic acid (SA) as well as pathogen-inducible hydrogen peroxides in leaves. Impaired microbe-associated molecular patterns (MAMPs)-induced (e.g. flg22) callose deposition. Hypersensitivity to root growth inhibition by indole 3-butyric acid (IBA), an auxin precursor. Reduced accumulation (at protein level).", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163" }, { "database": "PubMed", "id": "16473969", "url": "https://glygen.org/publication/PubMed/16473969" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter.", "journal": "Plant signaling & behavior", "date": "2017-10-03", "authors": "Underwood William, Somerville Shauna C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRRSISRSVSRASRNIEDIF", "down_seq": "SGSRRTQSVNDDEEALKWAA", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Normal resistance against Blumeria graminis and translocation to the host-pathogen interface.", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser37" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9XIE2-1.38.38", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9XIE2-1.40.40", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9XIE2-1.43.43", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9XIE2-1.45.45", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter.", "journal": "Plant signaling & behavior", "date": "2017-10-03", "authors": "Underwood William, Somerville Shauna C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRSISRSVSRASRNIEDIFS", "down_seq": "GSRRTQSVNDDEEALKWAAI", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Normal resistance against Blumeria graminis and translocation to the host-pathogen interface.", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser38" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9XIE2-1.37.37", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9XIE2-1.40.40", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9XIE2-1.43.43", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9XIE2-1.45.45", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter.", "journal": "Plant signaling & behavior", "date": "2017-10-03", "authors": "Underwood William, Somerville Shauna C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SISRSVSRASRNIEDIFSSG", "down_seq": "RRTQSVNDDEEALKWAAIEK", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Impaired resistance against Blumeria graminis but normal translocation to the host-pathogen interface.", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9XIE2-1.37.37", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9XIE2-1.38.38", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9XIE2-1.43.43", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9XIE2-1.45.45", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 16 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter.", "journal": "Plant signaling & behavior", "date": "2017-10-03", "authors": "Underwood William, Somerville Shauna C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry.", "journal": "Molecular & cellular proteomics : MCP", "date": "2003-11", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RSVSRASRNIEDIFSSGSRR", "down_seq": "QSVNDDEEALKWAAIEKLPT", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Normal resistance against Blumeria graminis and translocation to the host-pathogen interface.", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" }, { "database": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr43" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9XIE2-1.37.37", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9XIE2-1.38.38", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9XIE2-1.40.40", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9XIE2-1.45.45", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9XIE2-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter.", "journal": "Plant signaling & behavior", "date": "2017-10-03", "authors": "Underwood William, Somerville Shauna C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] }, { "title": "Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry.", "journal": "Molecular & cellular proteomics : MCP", "date": "2003-11", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSRASRNIEDIFSSGSRRTQ", "down_seq": "VNDDEEALKWAAIEKLPTYS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Impaired resistance against Blumeria graminis but normal translocation to the host-pathogen interface.", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser45" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9XIE2-1.37.37", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9XIE2-1.38.38", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9XIE2-1.40.40", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9XIE2-1.43.43", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9XIE2-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9XIE2-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.704.704", "start_pos": 704, "end_pos": 704, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways.", "journal": "Plant physiology", "date": "2015-07", "authors": "Lu Xunli, Dittgen Jan, Pi\u015blewska-Bednarek Mariola, Molina Antonio, Schneider Bernd, Svato\u0161 Ale\u0161, Doubsk\u00fd Jan, Schneeberger Korbinian, Weigel Detlef, Bednarek Pawe\u0142, Schulze-Lefert Paul", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "MIANTGGALTLLLVFLLGGF", "down_seq": "LPKGKIPDWWGWAYWVSPLT", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "F", "comment": "In pen3-5; slight overaccumulation in leaves of 4-O-beta-D-glucosyl-indol-3-yl formamide (4OGlcI3F) upon Blumeria graminis conidiospore inoculation, a pathogen-inducible tryptophan-derived compound, which biosynthesis is dependent on the PEN2 metabolic pathway. Fully defective in preinvasive defense to nonadapted powdery mildews (e.g. Blumeria graminis and Erysiphe pisi). Normal susceptibility to the host-adapted pathogen Golovinomyces orontii associated with normal salicylic acid (SA) pathogen-inducible hydrogen peroxides levels. Retained microbe-associated molecular patterns (MAMPs)-induced (e.g. flg22) callose deposition. Increased susceptibility to the necrotrophic pathogen Plectosphaerella cucumerina. Enhancer mutation of the mutant pen2-dependent invasive growth of Blumeria graminis. Normal insensitivity to indole-3-butyric acid (IBA), an auxin precursor. Normal accumulation (at protein level).", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.825.825", "start_pos": 825, "end_pos": 825, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter.", "journal": "Plant signaling & behavior", "date": "2017-10-03", "authors": "Underwood William, Somerville Shauna C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPEEENEDADQGKDPMRRSL", "down_seq": "TADGNRRGEVAMGRMSRDSA", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Normal resistance against Blumeria graminis and translocation to the host-pathogen interface.", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser825" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9XIE2-1.823.823", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9XIE2-1.826.826", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9XIE2-1.841.841", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9XIE2-1.844.844", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.844.844", "start_pos": 844, "end_pos": 844, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter.", "journal": "Plant signaling & behavior", "date": "2017-10-03", "authors": "Underwood William, Somerville Shauna C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSTADGNRRGEVAMGRMSRD", "down_seq": "AAEASGGAGNKKGMVLPFTP", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Normal resistance against Blumeria graminis and translocation to the host-pathogen interface.", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser844" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9XIE2-1.825.825", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9XIE2-1.826.826", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9XIE2-1.841.841", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9XIE2-1.849.849", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.915.915", "start_pos": 915, "end_pos": 915, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways.", "journal": "Plant physiology", "date": "2015-07", "authors": "Lu Xunli, Dittgen Jan, Pi\u015blewska-Bednarek Mariola, Molina Antonio, Schneider Bernd, Svato\u0161 Ale\u0161, Doubsk\u00fd Jan, Schneeberger Korbinian, Weigel Detlef, Bednarek Pawe\u0142, Schulze-Lefert Paul", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163" } ] }, { "title": "Arabidopsis PEN3/PDR8, an ATP binding cassette transporter, contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration.", "journal": "The Plant cell", "date": "2006-03", "authors": "Stein M\u00f3nica, Dittgen Jan, S\u00e1nchez-Rodr\u00edguez Clara, Hou Bi-Huei, Molina Antonio, Schulze-Lefert Paul, Lipka Volker, Somerville Shauna", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "16473969", "url": "https://glygen.org/publication/PubMed/16473969" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16473969", "url": "https://glygen.org/publication/PubMed/16473969", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LKGVTGAFRPGVLTALMGVS", "down_seq": "AGKTTLMDVLAGRKTGGYIE", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "In pen3-2; overaccumulation in leaves of 4-O-beta-D-glucosyl-indol-3-yl formamide (4OGlcI3F) upon Blumeria graminis conidiospore inoculation, a pathogen-inducible tryptophan-derived compound, which biosynthesis is dependent on the PEN2 metabolic pathway. More susceptible to the necrotrophic pathogen P.cucumerina, with higher frequency of fungal penetration and increased formation of elongating secondary hyphae after the first haustorium development. Fully defective in preinvasive defense to nonadapted powdery mildews (e.g. Blumeria graminis and Erysiphe pisi). Extensive leaf chlorosis and reduced fungal growth upon infection by the host-adapted pathogen Golovinomyces orontii associated with an hyperaccumulation of both free and total salicylic acid (SA) as well as pathogen-inducible hydrogen peroxides in leaves. Impaired microbe-associated molecular patterns (MAMPs)-induced (e.g. flg22) callose deposition. Hypersensitivity to root growth inhibition by indole 3-butyric acid (IBA), an auxin precursor. Reduced accumulation (at protein level).", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "26023163", "url": "https://glygen.org/publication/PubMed/26023163" }, { "database": "PubMed", "id": "16473969", "url": "https://glygen.org/publication/PubMed/16473969" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.494.494", "start_pos": 494, "end_pos": 494, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YIPVSEFASRYKSFHVGTKM", "down_seq": "NELAVPFDKSRGHKAALVFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser494" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TQSVNDDEEALKWAAIEKLP", "down_seq": "YSRLRTTLMNAVVEDDVYGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr63" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9XIE2-1.43.43", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9XIE2-1.45.45", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9XIE2-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVNDDEEALKWAAIEKLPTY", "down_seq": "RLRTTLMNAVVEDDVYGNQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9XIE2-1.45.45", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9XIE2-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.823.823", "start_pos": 823, "end_pos": 823, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLLPEEENEDADQGKDPMRR", "down_seq": "LSTADGNRRGEVAMGRMSRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser823" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9XIE2-1.825.825", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9XIE2-1.826.826", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9XIE2-1.841.841", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.826.826", "start_pos": 826, "end_pos": 826, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PEEENEDADQGKDPMRRSLS", "down_seq": "ADGNRRGEVAMGRMSRDSAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr826" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9XIE2-1.823.823", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9XIE2-1.825.825", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9XIE2-1.841.841", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9XIE2-1.844.844", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.841.841", "start_pos": 841, "end_pos": 841, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter.", "journal": "Plant signaling & behavior", "date": "2017-10-03", "authors": "Underwood William, Somerville Shauna C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRSLSTADGNRRGEVAMGRM", "down_seq": "RDSAAEASGGAGNKKGMVLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" }, { "database": "PubMed", "id": "28910579", "url": "https://glygen.org/publication/PubMed/28910579" }, { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser841" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9XIE2-1.823.823", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9XIE2-1.825.825", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9XIE2-1.826.826", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9XIE2-1.844.844", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9XIE2-1.849.849", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.849.849", "start_pos": 849, "end_pos": 849, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GNRRGEVAMGRMSRDSAAEA", "down_seq": "GGAGNKKGMVLPFTPLAMSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser849" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9XIE2-1.841.841", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9XIE2-1.844.844", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XIE2-1.960.960", "start_pos": 960, "end_pos": 960, "uniprot_canonical_ac": "Q9XIE2-1", "length": 1469, "uniprot_id": "AB36G_ARATH", "protein_name": "ABC transporter G family member 36", "refseq_ac": "NP_176196", "refseq_name": "ABC-2 and Plant PDR ABC-type transporter family protein", "gene_name": "ABCG36", "gene_names_uniprotkb": "ABCG36; F23H11.19; PDR8; PEN3", "gene_names_refseq": "ABCG36; ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8; ARABIDOPSIS THALIANA ATP-BINDING CASSETTE G36; ATABCG36; ATP-BINDING CASSETTE G36; ATP-binding cassette G36; ATPDR8; Arabidopsis thaliana ATP-binding cassette G36; F23H11.19; F23H11_19; PDR8; PEN3; PENETRATION 3; PLEIOTROPIC DRUG RESISTANCE 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XIE2", "url": "https://www.uniprot.org/uniprotkb/Q9XIE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ISGFPKVQETFARISGYCEQ", "down_seq": "DIHSPQVTVRESLIFSAFLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XIE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XIE2" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr960" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1357", "end_pos": "1357" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "915", "end_pos": "915" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "825", "end_pos": "825" }, { "start_pos": "826", "end_pos": "826" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "960", "end_pos": "960" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into the coordination of plastid division by the ARC6-PDV2 complex.", "journal": "Nature plants", "date": "2017-03-01", "authors": "Wang Wenhe, Li Jinyu, Sun Qingqing, Yu Xiaoyu, Zhang Weiwei, Jia Ning, An Chuanjing, Li Yiqiong, Dong Yanan, Han Fengjiao, Chang Ning, Liu Xiaomin, Zhu Zhiling, Yu You, Fan Shilong, Yang Maojun, Luo Shi-Zhong, Gao Hongbo, Feng Yue", "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "28248291", "url": "https://glygen.org/publication/PubMed/28248291" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28248291", "url": "https://glygen.org/publication/PubMed/28248291", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "CPPGKVLVIEDGEARCLVKE", "down_seq": "VEIPFDSVVAKRDVTYGYG", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "K", "comment": "In pdv2-4; impaired interaction with PDV2 leading to altered chloroplast division and fewer but larger chloroplasts.", "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" }, { "database": "PubMed", "id": "28248291", "url": "https://glygen.org/publication/PubMed/28248291" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q9XII1-1.307.307", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis ARC6 coordinates the division machineries of the inner and outer chloroplast membranes through interaction with PDV2 in the intermembrane space.", "journal": "The Plant cell", "date": "2008-09", "authors": "Glynn Jonathan M, Froehlich John E, Osteryoung Katherine W", "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "18812496", "url": "https://glygen.org/publication/PubMed/18812496" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18812496", "url": "https://glygen.org/publication/PubMed/18812496", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "ERVEIPFDSVVAKRDVTYGY", "down_seq": "", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "Impaired ARC6 interaction, and reduced number of constricted and large chloroplasts.", "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" }, { "database": "PubMed", "id": "18812496", "url": "https://glygen.org/publication/PubMed/18812496" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9XII1-1.288.288", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NNGYLSHLPSKKKSDANGFG", "down_seq": "GHVRNEAEAKSPNGGSGGSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser188" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q9XII1-1.199.199", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9XII1-1.204.204", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.199.199", "start_pos": 199, "end_pos": 199, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKSDANGFGSGHVRNEAEAK", "down_seq": "PNGGSGGSSHGVIRFLGSVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser199" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9XII1-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9XII1-1.204.204", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.204.204", "start_pos": 204, "end_pos": 204, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGFGSGHVRNEAEAKSPNGG", "down_seq": "GGSSHGVIRFLGSVAKIVLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser204" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9XII1-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9XII1-1.199.199", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RATELRLKISDCIDNSSTTV", "down_seq": "DNGDGNEDLSPGEGRKSEII", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q9XII1-1.50.50", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" }, { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTVSDNGDGNEDLSPGEGRK", "down_seq": "EIIGNQDKDFDSISSEDVDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ], "site_lbl": "Ser50" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9XII1-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9XII1-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9XII1-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9XII1-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSPGEGRKSEIIGNQDKDFD", "down_seq": "ISSEDVDEAEAERLLRIRDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser62" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9XII1-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9XII1-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9XII1-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" }, { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGEGRKSEIIGNQDKDFDSI", "down_seq": "SEDVDEAEAERLLRIRDALE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9XII1-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9XII1-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9XII1-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9XII1-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q9XII1-1", "length": 307, "uniprot_id": "PDV2_ARATH", "protein_name": "Plastid division protein PDV2", "refseq_ac": "NP_001324370", "refseq_name": "plastid division2", "gene_name": "PDV2", "gene_names_uniprotkb": "PDV2; F7H1.9; PD116", "gene_names_refseq": "F7H1.9; F7H1_9; PDV2; PLASTID DIVISION2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9XII1", "url": "https://www.uniprot.org/uniprotkb/Q9XII1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1-1" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GEGRKSEIIGNQDKDFDSIS", "down_seq": "EDVDEAEAERLLRIRDALEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9XII1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9XII1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "288", "end_pos": "288" }, { "start_pos": "307", "end_pos": "307" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9XII1-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9XII1-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9XII1-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZNX9-1.484.484", "start_pos": 484, "end_pos": 484, "uniprot_canonical_ac": "Q9ZNX9-1", "length": 517, "uniprot_id": "SIGE_ARATH", "protein_name": "RNA polymerase sigma factor sigE, chloroplastic/mitochondrial", "refseq_ac": "NP_001330408", "refseq_name": "sigma factor E", "gene_name": "SIGE", "gene_names_uniprotkb": "SIGE; MLE8.4; SIG5", "gene_names_refseq": "ATSIG5; MLE8.4; MLE8_4; SIG5; SIGE; SIGMA FACTOR 5; SIGMA FACTOR; sigma factor E", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light induction of Arabidopsis SIG1 and SIG5 transcripts in mature leaves: differential roles of cryptochrome 1 and cryptochrome 2 and dual function of SIG5 in the recognition of plastid promoters.", "journal": "The Plant journal : for cell and molecular biology", "date": "2008-09", "authors": "Onda Yayoi, Yagi Yusuke, Saito Yukiko, Takenaka Nobuhiro, Toyoshima Yoshinori", "evidence": [ { "database": "UniProtKB", "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9" } ], "reference": [ { "type": "PubMed", "id": "18532976", "url": "https://glygen.org/publication/PubMed/18532976" } ] } ], "crossref": [ { "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18532976", "url": "https://glygen.org/publication/PubMed/18532976", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IRQRYGLDGKGDRTLGEIAG", "down_seq": "LNISREMVRKHEVKALMKLK", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "R", "comment": "Attenuation of psbD promoter recognition.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9" }, { "database": "PubMed", "id": "18532976", "url": "https://glygen.org/publication/PubMed/18532976" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "484", "end_pos": "484" }, { "start_pos": "493", "end_pos": "493" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "27", "end_pos": "27" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q9ZNX9-1.493.493", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZNX9-1.493.493", "start_pos": 493, "end_pos": 493, "uniprot_canonical_ac": "Q9ZNX9-1", "length": 517, "uniprot_id": "SIGE_ARATH", "protein_name": "RNA polymerase sigma factor sigE, chloroplastic/mitochondrial", "refseq_ac": "NP_001330408", "refseq_name": "sigma factor E", "gene_name": "SIGE", "gene_names_uniprotkb": "SIGE; MLE8.4; SIG5", "gene_names_refseq": "ATSIG5; MLE8.4; MLE8_4; SIG5; SIGE; SIGMA FACTOR 5; SIGMA FACTOR; sigma factor E", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light induction of Arabidopsis SIG1 and SIG5 transcripts in mature leaves: differential roles of cryptochrome 1 and cryptochrome 2 and dual function of SIG5 in the recognition of plastid promoters.", "journal": "The Plant journal : for cell and molecular biology", "date": "2008-09", "authors": "Onda Yayoi, Yagi Yusuke, Saito Yukiko, Takenaka Nobuhiro, Toyoshima Yoshinori", "evidence": [ { "database": "UniProtKB", "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9" } ], "reference": [ { "type": "PubMed", "id": "18532976", "url": "https://glygen.org/publication/PubMed/18532976" } ] } ], "crossref": [ { "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18532976", "url": "https://glygen.org/publication/PubMed/18532976", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "KGDRTLGEIAGNLNISREMV", "down_seq": "KHEVKALMKLKHQARVDYLR", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "H", "comment": "No effect on psbD promoter recognition.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9" }, { "database": "PubMed", "id": "18532976", "url": "https://glygen.org/publication/PubMed/18532976" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "484", "end_pos": "484" }, { "start_pos": "493", "end_pos": "493" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "27", "end_pos": "27" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9ZNX9-1.484.484", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZNX9-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q9ZNX9-1", "length": 517, "uniprot_id": "SIGE_ARATH", "protein_name": "RNA polymerase sigma factor sigE, chloroplastic/mitochondrial", "refseq_ac": "NP_001330408", "refseq_name": "sigma factor E", "gene_name": "SIGE", "gene_names_uniprotkb": "SIGE; MLE8.4; SIG5", "gene_names_refseq": "ATSIG5; MLE8.4; MLE8_4; SIG5; SIGE; SIGMA FACTOR 5; SIGMA FACTOR; sigma factor E", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZNX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZNX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZNX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZNX9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSAARSPLGLGNDLLTHRS", "down_seq": "LKKPSIVAFKADDSSNSALI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZNX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZNX9" } ], "site_lbl": "Ser27" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "484", "end_pos": "484" }, { "start_pos": "493", "end_pos": "493" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "27", "end_pos": "27" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZP59-1.372.372", "start_pos": 372, "end_pos": 372, "uniprot_canonical_ac": "Q9ZP59-1", "length": 455, "uniprot_id": "TLP1_ARATH", "protein_name": "Tubby-like F-box protein 1", "refseq_ac": "NP_001319391", "refseq_name": "tubby like protein 1", "gene_name": "TULP1", "gene_names_uniprotkb": "TULP1; F22K20.1; F7O12.7; TLP1", "gene_names_refseq": "AtTLP1; F7O12.7; TLP1; tubby like protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZP59", "url": "https://www.uniprot.org/uniprotkb/Q9ZP59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KPPRWHEQLQCWCLNFRGRV", "down_seq": "VASVKNFQLIAANQPQPQPQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr372", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "372", "end_pos": "372" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZP59-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "Q9ZP59-1", "length": 455, "uniprot_id": "TLP1_ARATH", "protein_name": "Tubby-like F-box protein 1", "refseq_ac": "NP_001319391", "refseq_name": "tubby like protein 1", "gene_name": "TULP1", "gene_names_uniprotkb": "TULP1; F22K20.1; F7O12.7; TLP1", "gene_names_refseq": "AtTLP1; F7O12.7; TLP1; tubby like protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZP59", "url": "https://www.uniprot.org/uniprotkb/Q9ZP59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9ZP59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZP59" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q9ZP59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZP59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSFRSIVRDVRDSIGSLSRR", "down_seq": "FDFKLSSLNKEGGKSRGSVQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZP59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZP59" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "372", "end_pos": "372" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZPE4-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "Q9ZPE4-1", "length": 317, "uniprot_id": "FBW2_ARATH", "protein_name": "F-box protein FBW2", "refseq_ac": "NP_001078359", "refseq_name": "F-BOX WITH WD-40 2", "gene_name": "FBW2", "gene_names_uniprotkb": "FBW2; SKIP18; T3H13.1", "gene_names_refseq": "F-BOX WITH WD-40 2; FBW2; T3H13.1; T3H13_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZPE4", "url": "https://www.uniprot.org/uniprotkb/Q9ZPE4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZPE4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZPE4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGPYCWQEIDIELWSNRFHQ", "down_seq": "DHLDRMLEMLIPRSAGSLRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZPE4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZPE4" } ], "site_lbl": "Ser66" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZPW7-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "Q9ZPW7-1", "length": 262, "uniprot_id": "ZHD6_ARATH", "protein_name": "Zinc-finger homeodomain protein 6", "refseq_ac": "NP_565436", "refseq_name": "homeobox protein 24", "gene_name": "ZHD6", "gene_names_uniprotkb": "ZHD6; HB24; T30D6.14", "gene_names_refseq": "AtHB24; HB24; T30D6.14; T30D6_14; ZHD6; ZINC FINGER HOMEODOMAIN 6; homeobox protein 24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZPW7", "url": "https://www.uniprot.org/uniprotkb/Q9ZPW7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZPW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZPW7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZPW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZPW7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DLDTNPISISHAPRSYARPQ", "down_seq": "TSPGKARYRECQKNHAASSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZPW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZPW7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr74" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9ZPW7-1.75.75", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZPW7-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "Q9ZPW7-1", "length": 262, "uniprot_id": "ZHD6_ARATH", "protein_name": "Zinc-finger homeodomain protein 6", "refseq_ac": "NP_565436", "refseq_name": "homeobox protein 24", "gene_name": "ZHD6", "gene_names_uniprotkb": "ZHD6; HB24; T30D6.14", "gene_names_refseq": "AtHB24; HB24; T30D6.14; T30D6_14; ZHD6; ZINC FINGER HOMEODOMAIN 6; homeobox protein 24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZPW7", "url": "https://www.uniprot.org/uniprotkb/Q9ZPW7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZPW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZPW7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZPW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZPW7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LDTNPISISHAPRSYARPQT", "down_seq": "SPGKARYRECQKNHAASSGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZPW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZPW7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr75" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9ZPW7-1.74.74", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VVPLIAVIGGIHTTTLSKLS", "down_seq": "KSQESLSQAGNIVEQTVVQI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn217", "evidence": [ { "id": "Q9ZR72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZR72-1.640.640", "start_pos": 640, "end_pos": 640, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KSSARPSSARNSVSSPIMTR", "down_seq": "SSYGRSPYSRRLSDFSTSDF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn640", "evidence": [ { "id": "Q9ZR72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9ZR72-1.621.621", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9ZR72-1.622.622", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZR72-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZR72-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZR72-1.771.771", "start_pos": 771, "end_pos": 771, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSAALVFNTLQHSFWDIVGE", "down_seq": "LTKRVREKMLSAVLKNEMAW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn771", "evidence": [ { "id": "Q9ZR72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZR72-1.797.797", "start_pos": 797, "end_pos": 797, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "REKMLSAVLKNEMAWFDQEE", "down_seq": "ESARIAARLALDANNVRSAI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn797", "evidence": [ { "id": "Q9ZR72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZR72-1.1188.1188", "start_pos": 1188, "end_pos": 1188, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "KQRIAIARALVRKAEIMLLD", "down_seq": "ATSALDAESERSVQEALDQA", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "Q", "comment": "In ABCB1(EQ); loss of ATPase activity associated with altered brassinosteroid export capacity; when associated with Q-1188.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "IAQKLGYKTGLAKGMGLGAT", "down_seq": "FVVFCCYALLLWYGGYLVRH", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Slightly increased brassinolide-triggered ATPase activity but normal brassinosteroid exporter activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9ZR72-1.282.282", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZR72-1.286.286", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "KLGYKTGLAKGMGLGATYFV", "down_seq": "FCCYALLLWYGGYLVRHHLT", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZR72-1.279.279", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZR72-1.286.286", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KTGLAKGMGLGATYFVVFCC", "down_seq": "ALLLWYGGYLVRHHLTNGGL", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity and altered brassinosteroid exporter activity. Strongly altered brassinosteroid exporter activity; when associated with A-941.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9ZR72-1.279.279", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZR72-1.282.282", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "YGGYLVRHHLTNGGLAIATM", "down_seq": "AVMIGGLALGQSAPSMAAFA", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity and altered brassinosteroid exporter activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9ZR72-1.315.315", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZR72-1.319.319", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "YLVRHHLTNGGLAIATMFAV", "down_seq": "IGGLALGQSAPSMAAFAKAK", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZR72-1.312.312", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZR72-1.319.319", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.319.319", "start_pos": 319, "end_pos": 319, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "HHLTNGGLAIATMFAVMIGG", "down_seq": "ALGQSAPSMAAFAKAKVAAA", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9ZR72-1.312.312", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZR72-1.315.315", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.532.532", "start_pos": 532, "end_pos": 532, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "KQRIAIARAMLKNPAILLLD", "down_seq": "ATSALDSESEKLVQEALDRF", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "Q", "comment": "In ABCB1(EQ); loss of ATPase activity associated with altered brassinosteroid export capacity; when associated with Q-532.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.61.61", "start_pos": 61, "end_pos": 61, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "YVLMGIGSVGAFVHGCSLPL", "down_seq": "LRFFADLVNSFGSNSNNVEK", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity and altered brassinosteroid exporter activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9ZR72-1.65.65", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "GIGSVGAFVHGCSLPLFLRF", "down_seq": "ADLVNSFGSNSNNVEKMMEE", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity and altered brassinosteroid exporter activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9ZR72-1.61.61", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.717.717", "start_pos": 717, "end_pos": 717, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "WKYALLGSVGSVICGSLSAF", "down_seq": "AYVLSAVLSVYYNPDHEYMI", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity and altered brassinosteroid exporter activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9ZR72-1.721.721", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.721.721", "start_pos": 721, "end_pos": 721, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "LLGSVGSVICGSLSAFFAYV", "down_seq": "SAVLSVYYNPDHEYMIKQID", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Normal brassinolide-triggered ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9ZR72-1.717.717", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.941.941", "start_pos": 941, "end_pos": 941, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "WKGQIAGSGYGVAQFCLYAS", "down_seq": "ALGLWYASWLVKHGISDFSK", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity and altered brassinosteroid exporter activity. Strongly altered brassinosteroid exporter activity; when associated with A-286.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.966.966", "start_pos": 966, "end_pos": 966, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "WYASWLVKHGISDFSKTIRV", "down_seq": "MVLMVSANGAAETLTLAPDF", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced brassinolide-triggered ATPase activity and altered brassinosteroid exporter activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9ZR72-1.970.970", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZR72-1.978.978", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9ZR72-1.984.984", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.970.970", "start_pos": 970, "end_pos": 970, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "WLVKHGISDFSKTIRVFMVL", "down_seq": "VSANGAAETLTLAPDFIKGG", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "A", "comment": "Slightly increased brassinolide-triggered ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9ZR72-1.966.966", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZR72-1.978.978", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9ZR72-1.984.984", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.978.978", "start_pos": 978, "end_pos": 978, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "DFSKTIRVFMVLMVSANGAA", "down_seq": "TLTLAPDFIKGGQAMRSVFE", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Normal brassinolide-triggered ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9ZR72-1.966.966", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZR72-1.970.970", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZR72-1.984.984", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.984.984", "start_pos": 984, "end_pos": 984, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.", "journal": "Plant communications", "date": "2024-11-04", "authors": "Wei Hong, Zhu Heyuan, Ying Wei, Janssens Hilde, Kvasnica Miroslav, Winne Johan M, Gao Yongxiang, Friml Ji\u0159\u00ed, Ma Qian, Tan Shutang, Liu Xin, Russinova Eugenia, Sun Linfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "RVFMVLMVSANGAAETLTLA", "down_seq": "DFIKGGQAMRSVFELLDRKT", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "A", "comment": "Slight increase in brassinolide-triggered ATPase activity and modest elevation in brassinosteroid exporter activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "PubMed", "id": "39497419", "url": "https://glygen.org/publication/PubMed/39497419" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9ZR72-1.966.966", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9ZR72-1.970.970", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZR72-1.978.978", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.1277.1277", "start_pos": 1277, "end_pos": 1277, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARMIQLQRFTHTQVIGMTSG", "down_seq": "SSRVKEDDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1277" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.621.621", "start_pos": 621, "end_pos": 621, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLIKMQEAAHETAMSNARK", "down_seq": "SARPSSARNSVSSPIMTRNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser621" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9ZR72-1.622.622", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.622.622", "start_pos": 622, "end_pos": 622, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLIKMQEAAHETAMSNARKS", "down_seq": "ARPSSARNSVSSPIMTRNSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser622" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9ZR72-1.621.621", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.627.627", "start_pos": 627, "end_pos": 627, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QEAAHETAMSNARKSSARPS", "down_seq": "ARNSVSSPIMTRNSSYGRSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser627" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9ZR72-1.621.621", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9ZR72-1.622.622", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9ZR72-1.646.646", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.631.631", "start_pos": 631, "end_pos": 631, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HETAMSNARKSSARPSSARN", "down_seq": "VSSPIMTRNSSYGRSPYSRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser631" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9ZR72-1.621.621", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9ZR72-1.622.622", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9ZR72-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9ZR72-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.633.633", "start_pos": 633, "end_pos": 633, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAMSNARKSSARPSSARNSV", "down_seq": "SPIMTRNSSYGRSPYSRRLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser633" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9ZR72-1.621.621", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9ZR72-1.622.622", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZR72-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9ZR72-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.634.634", "start_pos": 634, "end_pos": 634, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" }, { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AMSNARKSSARPSSARNSVS", "down_seq": "PIMTRNSSYGRSPYSRRLSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser634" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q9ZR72-1.621.621", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9ZR72-1.622.622", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZR72-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9ZR72-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.641.641", "start_pos": 641, "end_pos": 641, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSARPSSARNSVSSPIMTRN", "down_seq": "SYGRSPYSRRLSDFSTSDFS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser641" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9ZR72-1.621.621", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q9ZR72-1.622.622", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9ZR72-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZR72-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.642.642", "start_pos": 642, "end_pos": 642, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SARPSSARNSVSSPIMTRNS", "down_seq": "YGRSPYSRRLSDFSTSDFSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser642" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9ZR72-1.622.622", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZR72-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZR72-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.646.646", "start_pos": 646, "end_pos": 646, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSARNSVSSPIMTRNSSYGR", "down_seq": "PYSRRLSDFSTSDFSLSIDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser646" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9ZR72-1.627.627", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZR72-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.648.648", "start_pos": 648, "end_pos": 648, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ARNSVSSPIMTRNSSYGRSP", "down_seq": "SRRLSDFSTSDFSLSIDASS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr648" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9ZR72-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9ZR72-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9ZR72-1.634.634", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZR72-1.640.640", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9ZR72-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZR72-1.642.642", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZR72-1.646.646", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZR72-1.882.882", "start_pos": 882, "end_pos": 882, "uniprot_canonical_ac": "Q9ZR72-1", "length": 1286, "uniprot_id": "AB1B_ARATH", "protein_name": "ABC transporter B family member 1", "refseq_ac": "NP_181228", "refseq_name": "ATP binding cassette subfamily B1", "gene_name": "ABCB1", "gene_names_uniprotkb": "ABCB1; MDR1; PGP1; T1J8.9", "gene_names_refseq": "ABCB1; ARABIDOPSIS THALIANA P GLYCOPROTEIN1; ATP binding cassette subfamily B1; ATP-binding cassette B1; ATPGP1; P-GLYCOPROTEIN 1; PGP1; T1J8.9; T1J8_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZR72", "url": "https://www.uniprot.org/uniprotkb/Q9ZR72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LQKMFMTGFSGDLEAAHAKG", "down_seq": "QLAGEAIANVRTVAAFNSEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZR72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZR72" } ], "site_lbl": "Thr882" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "797", "end_pos": "797" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "941", "end_pos": "941" }, { "start_pos": "966", "end_pos": "966" }, { "start_pos": "970", "end_pos": "970" }, { "start_pos": "978", "end_pos": "978" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1277", "end_pos": "1277" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "627", "end_pos": "627" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "882", "end_pos": "882" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZRE2-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "Q9ZRE2-1", "length": 205, "uniprot_id": "RABD1_ARATH", "protein_name": "Ras-related protein RABD1", "refseq_ac": "NP_187779", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABD1", "gene_names_uniprotkb": "RABD1; ATFP8; F26K24.2", "gene_names_refseq": "ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1; ATFP8; ATRABD1; RAB GTPASE HOMOLOG D1; RABD1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases exhibit distinct but overlapping interactions in the early secretory pathway.", "journal": "Journal of cell science", "date": "2009-10-15", "authors": "Pinheiro Hazel, Samalova Marketa, Geldner Niko, Chory Joanne, Martinez Alberto, Moore Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" } ], "reference": [ { "type": "PubMed", "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181" } ] } ], "crossref": [ { "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QWLSEIDRYANESVCKLLIG", "down_seq": "KNDMVESKVVSTETGRALAD", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "I", "comment": "Inhibits trafficking between the ER and Golgi. Causes severe dwarfism and seedlings death.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" }, { "database": "PubMed", "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "67", "end_pos": "67" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZRE2-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "Q9ZRE2-1", "length": 205, "uniprot_id": "RABD1_ARATH", "protein_name": "Ras-related protein RABD1", "refseq_ac": "NP_187779", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABD1", "gene_names_uniprotkb": "RABD1; ATFP8; F26K24.2", "gene_names_refseq": "ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1; ATFP8; ATRABD1; RAB GTPASE HOMOLOG D1; RABD1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases exhibit distinct but overlapping interactions in the early secretory pathway.", "journal": "Journal of cell science", "date": "2009-10-15", "authors": "Pinheiro Hazel, Samalova Marketa, Geldner Niko, Chory Joanne, Martinez Alberto, Moore Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" } ], "reference": [ { "type": "PubMed", "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181" } ] } ], "crossref": [ { "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNEYDYLFKLLLIGDSSVGK", "down_seq": "CLLLRFADDAYIDSYISTIG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "N", "comment": "Dominant negative (GDP-bound form); no effect on trafficking between the ER and Golgi.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" }, { "database": "PubMed", "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "67", "end_pos": "67" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZRE2-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q9ZRE2-1", "length": 205, "uniprot_id": "RABD1_ARATH", "protein_name": "Ras-related protein RABD1", "refseq_ac": "NP_187779", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABD1", "gene_names_uniprotkb": "RABD1; ATFP8; F26K24.2", "gene_names_refseq": "ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1; ATFP8; ATRABD1; RAB GTPASE HOMOLOG D1; RABD1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases exhibit distinct but overlapping interactions in the early secretory pathway.", "journal": "Journal of cell science", "date": "2009-10-15", "authors": "Pinheiro Hazel, Samalova Marketa, Geldner Niko, Chory Joanne, Martinez Alberto, Moore Ian", "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" } ], "reference": [ { "type": "PubMed", "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181" } ] } ], "crossref": [ { "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "IRTIEQDGKTIKLQIWDTAG", "down_seq": "ERFRTITSSYYRGAHGIIIV", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "L", "comment": "No effect on trafficking between the ER and Golgi.", "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" }, { "database": "PubMed", "id": "19789181", "url": "https://glygen.org/publication/PubMed/19789181" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "67", "end_pos": "67" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q9ZRE2-1.74.74", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZRE2-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "Q9ZRE2-1", "length": 205, "uniprot_id": "RABD1_ARATH", "protein_name": "Ras-related protein RABD1", "refseq_ac": "NP_187779", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABD1", "gene_names_uniprotkb": "RABD1; ATFP8; F26K24.2", "gene_names_refseq": "ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1; ATFP8; ATRABD1; RAB GTPASE HOMOLOG D1; RABD1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZRE2", "url": "https://www.uniprot.org/uniprotkb/Q9ZRE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZRE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZRE2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZRE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZRE2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKTIKLQIWDTAGQERFRTI", "down_seq": "SSYYRGAHGIIIVYDCTEME", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZRE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZRE2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr74" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "67", "end_pos": "67" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9ZRE2-1.67.67", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZSA2-1.244.244", "start_pos": 244, "end_pos": 244, "uniprot_canonical_ac": "Q9ZSA2-1", "length": 531, "uniprot_id": "CDPKL_ARATH", "protein_name": "Calcium-dependent protein kinase 21", "refseq_ac": "NP_001319867", "refseq_name": "calcium-dependent protein kinase 21", "gene_name": "CPK21", "gene_names_uniprotkb": "CPK21; T4B21.13", "gene_names_refseq": "AtCPK21; CPK21; T4B21.13; T4B21_13; calcium-dependent protein kinase 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZSA2", "url": "https://www.uniprot.org/uniprotkb/Q9ZSA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZSA2", "url": "https://www.uniprot.org/uniprotkb/Q9ZSA2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TDFGLSVFIEEGKVYRDIVG", "down_seq": "AYYVAPEVLRRSYGKEIDIW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9ZSA2", "url": "https://www.uniprot.org/uniprotkb/Q9ZSA2" } ], "site_lbl": "Ser244" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "244", "end_pos": "244" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "417", "end_pos": "417" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZSA2-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q9ZSA2-1", "length": 531, "uniprot_id": "CDPKL_ARATH", "protein_name": "Calcium-dependent protein kinase 21", "refseq_ac": "NP_001319867", "refseq_name": "calcium-dependent protein kinase 21", "gene_name": "CPK21", "gene_names_uniprotkb": "CPK21; T4B21.13", "gene_names_refseq": "AtCPK21; CPK21; T4B21.13; T4B21_13; calcium-dependent protein kinase 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZSA2", "url": "https://www.uniprot.org/uniprotkb/Q9ZSA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KHRKTQNDGGEKSIPINPVQ", "down_seq": "HVVPEHRKPQTPTPKPMTQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr27" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "244", "end_pos": "244" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "417", "end_pos": "417" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q9ZSA2-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZSA2-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "Q9ZSA2-1", "length": 531, "uniprot_id": "CDPKL_ARATH", "protein_name": "Calcium-dependent protein kinase 21", "refseq_ac": "NP_001319867", "refseq_name": "calcium-dependent protein kinase 21", "gene_name": "CPK21", "gene_names_uniprotkb": "CPK21; T4B21.13", "gene_names_refseq": "AtCPK21; CPK21; T4B21.13; T4B21_13; calcium-dependent protein kinase 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZSA2", "url": "https://www.uniprot.org/uniprotkb/Q9ZSA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KSIPINPVQTHVVPEHRKPQ", "down_seq": "PTPKPMTQPIHQQISTPSSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr38" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "244", "end_pos": "244" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "417", "end_pos": "417" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9ZSA2-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZSA2-1.417.417", "start_pos": 417, "end_pos": 417, "uniprot_canonical_ac": "Q9ZSA2-1", "length": 531, "uniprot_id": "CDPKL_ARATH", "protein_name": "Calcium-dependent protein kinase 21", "refseq_ac": "NP_001319867", "refseq_name": "calcium-dependent protein kinase 21", "gene_name": "CPK21", "gene_names_uniprotkb": "CPK21; T4B21.13", "gene_names_refseq": "AtCPK21; CPK21; T4B21.13; T4B21_13; calcium-dependent protein kinase 21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZSA2", "url": "https://www.uniprot.org/uniprotkb/Q9ZSA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGTITYEELKTGLTRLGSRL", "down_seq": "ETEVKQLMEAADVDGNGTID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZSA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZSA2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser417" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "244", "end_pos": "244" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "417", "end_pos": "417" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUL5-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "Q9ZUL5-1", "length": 763, "uniprot_id": "CHR19_ARATH", "protein_name": "Protein CHROMATIN REMODELING 19", "refseq_ac": "NP_178318", "refseq_name": "SNF2 domain-containing protein / helicase domain-containing protein", "gene_name": "ETL1", "gene_names_uniprotkb": "ETL1; CHR19; F5O4.14", "gene_names_refseq": "CHA19; CHR19; CHROMATIN REMODELING 19; ETL1; F5O4.14; F5O4_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUL5", "url": "https://www.uniprot.org/uniprotkb/Q9ZUL5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ASRVLKRPRTPKKTRAATNP", "down_seq": "PSIESFAFRRPSTAMTIESN", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr40", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUL5-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "Q9ZUL5-1", "length": 763, "uniprot_id": "CHR19_ARATH", "protein_name": "Protein CHROMATIN REMODELING 19", "refseq_ac": "NP_178318", "refseq_name": "SNF2 domain-containing protein / helicase domain-containing protein", "gene_name": "ETL1", "gene_names_uniprotkb": "ETL1; CHR19; F5O4.14", "gene_names_refseq": "CHA19; CHR19; CHROMATIN REMODELING 19; ETL1; F5O4.14; F5O4_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUL5", "url": "https://www.uniprot.org/uniprotkb/Q9ZUL5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VVGKALQKCAKISADLRKEL", "down_seq": "GTSSGVTDRYSEVETSTVRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5" } ], "site_lbl": "Tyr172" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9ZUL5-1.175.175", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUL5-1.175.175", "start_pos": 175, "end_pos": 175, "uniprot_canonical_ac": "Q9ZUL5-1", "length": 763, "uniprot_id": "CHR19_ARATH", "protein_name": "Protein CHROMATIN REMODELING 19", "refseq_ac": "NP_178318", "refseq_name": "SNF2 domain-containing protein / helicase domain-containing protein", "gene_name": "ETL1", "gene_names_uniprotkb": "ETL1; CHR19; F5O4.14", "gene_names_refseq": "CHA19; CHR19; CHROMATIN REMODELING 19; ETL1; F5O4.14; F5O4_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUL5", "url": "https://www.uniprot.org/uniprotkb/Q9ZUL5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KALQKCAKISADLRKELYGT", "down_seq": "SGVTDRYSEVETSTVRIVTQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5" } ], "site_lbl": "Ser175" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZUL5-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUL5-1.649.649", "start_pos": 649, "end_pos": 649, "uniprot_canonical_ac": "Q9ZUL5-1", "length": 763, "uniprot_id": "CHR19_ARATH", "protein_name": "Protein CHROMATIN REMODELING 19", "refseq_ac": "NP_178318", "refseq_name": "SNF2 domain-containing protein / helicase domain-containing protein", "gene_name": "ETL1", "gene_names_uniprotkb": "ETL1; CHR19; F5O4.14", "gene_names_refseq": "CHA19; CHR19; CHROMATIN REMODELING 19; ETL1; F5O4.14; F5O4_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUL5", "url": "https://www.uniprot.org/uniprotkb/Q9ZUL5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VTYRRLDGSTQVTDRQTIVD", "down_seq": "FNNDKSIFACLLSTRAGGQG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr649" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUL5-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "Q9ZUL5-1", "length": 763, "uniprot_id": "CHR19_ARATH", "protein_name": "Protein CHROMATIN REMODELING 19", "refseq_ac": "NP_178318", "refseq_name": "SNF2 domain-containing protein / helicase domain-containing protein", "gene_name": "ETL1", "gene_names_uniprotkb": "ETL1; CHR19; F5O4.14", "gene_names_refseq": "CHA19; CHR19; CHROMATIN REMODELING 19; ETL1; F5O4.14; F5O4_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUL5", "url": "https://www.uniprot.org/uniprotkb/Q9ZUL5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKRDFDEI", "down_seq": "EEEWSQHSFNASRVLKRPRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUL5" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZWA2-1.244.244", "start_pos": 244, "end_pos": 244, "uniprot_canonical_ac": "Q9ZWA2-1", "length": 245, "uniprot_id": "ERF77_ARATH", "protein_name": "Ethylene-responsive transcription factor 10", "refseq_ac": "NP_171876", "refseq_name": "ERF domain protein 10", "gene_name": "ERF10", "gene_names_uniprotkb": "ERF10; ERF-10; ERF077; F21M11.27; F21M11_27", "gene_names_refseq": "ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10; ATERF10; ERF domain protein 10; ERF10; F21M11.29; F21M11_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZWA2", "url": "https://www.uniprot.org/uniprotkb/Q9ZWA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZWA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZWA2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZWA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZWA2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q9ZWA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZWA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETSSAVDCKLRMEPDLDLNA", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZWA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZWA2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser244" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "244", "end_pos": "244" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84TJ7-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "Q84TJ7-1", "length": 1011, "uniprot_id": "MCTP7_ARATH", "protein_name": "Multiple C2 domain and transmembrane region protein 7", "refseq_ac": "NP_192898", "refseq_name": "C2 calcium/lipid-binding plant phosphoribosyltransferase family protein", "gene_name": "MCTP7", "gene_names_uniprotkb": "MCTP7; T5C23.40; T5C23_40", "gene_names_refseq": "T5C23.40; T5C23_40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84TJ7", "url": "https://www.uniprot.org/uniprotkb/Q84TJ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84TJ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84TJ7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MERRGIFSRVRGELGLKVYI", "down_seq": "DEASLKSSAASNDHPDNLDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84TJ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84TJ7" } ], "site_lbl": "Thr132" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WG1-1.293.293", "start_pos": 293, "end_pos": 293, "uniprot_canonical_ac": "Q84WG1-1", "length": 503, "uniprot_id": "NHX3_ARATH", "protein_name": "Sodium/hydrogen exchanger 3", "refseq_ac": "NP_001327377", "refseq_name": "sodium hydrogen exchanger 4", "gene_name": "NHX3; NHX4", "gene_names_uniprotkb": "NHX3; NHX4; ATNHX4; F24P17.16; F24P17_16; sodium hydrogen exchanger 4", "gene_names_refseq": "ATNHX4; F24P17.16; F24P17_16; NHX4; sodium hydrogen exchanger 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSSILTVFFCGIVMSHYTWH", "down_seq": "VTDKSKVTTKHTFAAMSFLA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn293", "evidence": [ { "id": "Q84WG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WG1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "293", "end_pos": "293" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "453", "end_pos": "453" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WG1-1.368.368", "start_pos": 368, "end_pos": 368, "uniprot_canonical_ac": "Q84WG1-1", "length": 503, "uniprot_id": "NHX3_ARATH", "protein_name": "Sodium/hydrogen exchanger 3", "refseq_ac": "NP_001327377", "refseq_name": "sodium hydrogen exchanger 4", "gene_name": "NHX3; NHX4", "gene_names_uniprotkb": "NHX3; NHX4; ATNHX4; F24P17.16; F24P17_16; sodium hydrogen exchanger 4", "gene_names_refseq": "ATNHX4; F24P17.16; F24P17_16; NHX4; sodium hydrogen exchanger 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LLGLILLGRAAFVFPLSFLS", "down_seq": "LTKSSPDEKIDLKKQVTIWW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn368", "evidence": [ { "id": "Q84WG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WG1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "293", "end_pos": "293" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "453", "end_pos": "453" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WG1-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "Q84WG1-1", "length": 503, "uniprot_id": "NHX3_ARATH", "protein_name": "Sodium/hydrogen exchanger 3", "refseq_ac": "NP_001327377", "refseq_name": "sodium hydrogen exchanger 4", "gene_name": "NHX3; NHX4", "gene_names_uniprotkb": "NHX3; NHX4; ATNHX4; F24P17.16; F24P17_16; sodium hydrogen exchanger 4", "gene_names_refseq": "ATNHX4; F24P17.16; F24P17_16; NHX4; sodium hydrogen exchanger 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VALLCACIVLGHLLEETRWM", "down_seq": "ESITALIIGSCTGIVILLIS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn50", "evidence": [ { "id": "Q84WG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WG1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "293", "end_pos": "293" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "453", "end_pos": "453" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WG1-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "Q84WG1-1", "length": 503, "uniprot_id": "NHX3_ARATH", "protein_name": "Sodium/hydrogen exchanger 3", "refseq_ac": "NP_001327377", "refseq_name": "sodium hydrogen exchanger 4", "gene_name": "NHX3; NHX4", "gene_names_uniprotkb": "NHX3; NHX4; ATNHX4; F24P17.16; F24P17_16; sodium hydrogen exchanger 4", "gene_names_refseq": "ATNHX4; F24P17.16; F24P17_16; NHX4; sodium hydrogen exchanger 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MVIGLSTMLEK", "down_seq": "EALFASDHASVVSMNLFVAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr12" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "293", "end_pos": "293" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "453", "end_pos": "453" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q84WG1-1.18.18", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q84WG1-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q84WG1-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WG1-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "Q84WG1-1", "length": 503, "uniprot_id": "NHX3_ARATH", "protein_name": "Sodium/hydrogen exchanger 3", "refseq_ac": "NP_001327377", "refseq_name": "sodium hydrogen exchanger 4", "gene_name": "NHX3; NHX4", "gene_names_uniprotkb": "NHX3; NHX4; ATNHX4; F24P17.16; F24P17_16; sodium hydrogen exchanger 4", "gene_names_refseq": "ATNHX4; F24P17.16; F24P17_16; NHX4; sodium hydrogen exchanger 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MVIGLSTMLEKTEALFA", "down_seq": "DHASVVSMNLFVALLCACIV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser18" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "293", "end_pos": "293" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "453", "end_pos": "453" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q84WG1-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q84WG1-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q84WG1-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WG1-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "Q84WG1-1", "length": 503, "uniprot_id": "NHX3_ARATH", "protein_name": "Sodium/hydrogen exchanger 3", "refseq_ac": "NP_001327377", "refseq_name": "sodium hydrogen exchanger 4", "gene_name": "NHX3; NHX4", "gene_names_uniprotkb": "NHX3; NHX4; ATNHX4; F24P17.16; F24P17_16; sodium hydrogen exchanger 4", "gene_names_refseq": "ATNHX4; F24P17.16; F24P17_16; NHX4; sodium hydrogen exchanger 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VIGLSTMLEKTEALFASDHA", "down_seq": "VVSMNLFVALLCACIVLGHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "293", "end_pos": "293" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "453", "end_pos": "453" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q84WG1-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q84WG1-1.18.18", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q84WG1-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WG1-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "Q84WG1-1", "length": 503, "uniprot_id": "NHX3_ARATH", "protein_name": "Sodium/hydrogen exchanger 3", "refseq_ac": "NP_001327377", "refseq_name": "sodium hydrogen exchanger 4", "gene_name": "NHX3; NHX4", "gene_names_uniprotkb": "NHX3; NHX4; ATNHX4; F24P17.16; F24P17_16; sodium hydrogen exchanger 4", "gene_names_refseq": "ATNHX4; F24P17.16; F24P17_16; NHX4; sodium hydrogen exchanger 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSTMLEKTEALFASDHASVV", "down_seq": "MNLFVALLCACIVLGHLLEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "293", "end_pos": "293" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "453", "end_pos": "453" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q84WG1-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q84WG1-1.18.18", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q84WG1-1.22.22", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WG1-1.453.453", "start_pos": 453, "end_pos": 453, "uniprot_canonical_ac": "Q84WG1-1", "length": 503, "uniprot_id": "NHX3_ARATH", "protein_name": "Sodium/hydrogen exchanger 3", "refseq_ac": "NP_001327377", "refseq_name": "sodium hydrogen exchanger 4", "gene_name": "NHX3; NHX4", "gene_names_uniprotkb": "NHX3; NHX4; ATNHX4; F24P17.16; F24P17_16; sodium hydrogen exchanger 4", "gene_names_refseq": "ATNHX4; F24P17.16; F24P17_16; NHX4; sodium hydrogen exchanger 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WG1", "url": "https://www.uniprot.org/uniprotkb/Q84WG1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VFGLLTKPLVKHLQPSSKQS", "down_seq": "TTALQITLRSSFHDPILHEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WG1" } ], "site_lbl": "Ser453" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "293", "end_pos": "293" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "453", "end_pos": "453" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXT3-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "Q8GXT3-1", "length": 454, "uniprot_id": "BH123_ARATH", "protein_name": "Transcription factor bHLH123", "refseq_ac": "NP_188700", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "BHLH123", "gene_names_uniprotkb": "BHLH123; EN63; F3H11.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXT3", "url": "https://www.uniprot.org/uniprotkb/Q8GXT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXT3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXT3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STGNYDQMASALPSTWFLRS", "down_seq": "PPPKPHSPLRFSNNATFWNP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXT3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser249" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q8GXT3-1.256.256", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXT3-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q8GXT3-1", "length": 454, "uniprot_id": "BH123_ARATH", "protein_name": "Transcription factor bHLH123", "refseq_ac": "NP_188700", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "BHLH123", "gene_names_uniprotkb": "BHLH123; EN63; F3H11.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXT3", "url": "https://www.uniprot.org/uniprotkb/Q8GXT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXT3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXT3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MASALPSTWFLRSSPPPKPH", "down_seq": "PLRFSNNATFWNPAAAGNAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXT3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser256" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GXT3-1.249.249", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JR9-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FRELDFGSPLRPRGSSSAAA", "down_seq": "PAASGSSSSSSGSASGKPAV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr55", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q84JR9-1.42.42", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JR9-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KPGSVNRNLKPGHRRSASAG", "down_seq": "PLIYSGLGFSPVNNNNNSSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Thr118" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q84JR9-1.128.128", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JR9-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGHRRSASAGTPLIYSGLGF", "down_seq": "PVNNNNNSSRGGGSGATSPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser128" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q84JR9-1.118.118", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JR9-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SHYRRHSLEPSITSKFRDSL", "down_seq": "FQRDDDVINKPDFRELDFGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q84JR9-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q84JR9-1.42.42", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JR9-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFQRDDDVINKPDFRELDFG", "down_seq": "PLRPRGSSSAAATPAASGSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" }, { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q84JR9-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q84JR9-1.55.55", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JR9-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSGSASGKPAVTSQFARRSH", "down_seq": "GELSGLSQTSPVKPGSVNRN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser85" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q84JR9-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q84JR9-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JR9-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASGKPAVTSQFARRSHSGEL", "down_seq": "GLSQTSPVKPGSVNRNLKPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser89" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q84JR9-1.85.85", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q84JR9-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JR9-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSHYRRH", "down_seq": "LEPSITSKFRDSLSFQRDDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" }, { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q84JR9-1.22.22", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JR9-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q84JR9-1", "length": 682, "uniprot_id": "TTL4_ARATH", "protein_name": "TPR repeat-containing thioredoxin TTL4", "refseq_ac": "NP_191421", "refseq_name": "tetratricopetide-repeat thioredoxin-like 4", "gene_name": "TTL4", "gene_names_uniprotkb": "TTL4; F14P22.210", "gene_names_refseq": "TTL4; tetratricopetide-repeat thioredoxin-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JR9", "url": "https://www.uniprot.org/uniprotkb/Q84JR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTSQFARRSHSGELSGLSQT", "down_seq": "PVKPGSVNRNLKPGHRRSAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JR9" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser95" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q84JR9-1.85.85", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q84JR9-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q700E4-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q700E4-1", "length": 358, "uniprot_id": "BH067_ARATH", "protein_name": "Transcription factor bHLH67", "refseq_ac": "NP_567121", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "BHLH67; MYC67", "gene_names_uniprotkb": "BHLH67; MYC67; EN11; F21F14.120", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q700E4", "url": "https://www.uniprot.org/uniprotkb/Q700E4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q700E4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700E4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSNDLWTTLEDQTCIPKIEA", "down_seq": "VIQNHVSLKVQCEKKQGQLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q700E4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700E4" } ], "site_lbl": "Thr279" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "279", "end_pos": "279" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WL6-1.124.124", "start_pos": 124, "end_pos": 124, "uniprot_canonical_ac": "Q84WL6-1", "length": 338, "uniprot_id": "WDL3_ARATH", "protein_name": "Protein WVD2-like 3", "refseq_ac": "NP_001326991", "refseq_name": "TPX2 (targeting protein for Xklp2) protein family", "gene_name": "WDL3", "gene_names_uniprotkb": "WDL3; MXC7.13", "gene_names_refseq": "WDL3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WL6", "url": "https://www.uniprot.org/uniprotkb/Q84WL6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNTVPQPFSLATEKRASSTR", "down_seq": "FTSESLESAGLKKFPDGHSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser124" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "195", "end_pos": "195" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WL6-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "Q84WL6-1", "length": 338, "uniprot_id": "WDL3_ARATH", "protein_name": "Protein WVD2-like 3", "refseq_ac": "NP_001326991", "refseq_name": "TPX2 (targeting protein for Xklp2) protein family", "gene_name": "WDL3", "gene_names_uniprotkb": "WDL3; MXC7.13", "gene_names_refseq": "WDL3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WL6", "url": "https://www.uniprot.org/uniprotkb/Q84WL6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] } ], "crossref": [ { "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VQSQATKVPRKPLQPKNKKL", "down_seq": "DEEDSCSVASYATSGAKSAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ], "site_lbl": "Ser165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "195", "end_pos": "195" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WL6-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "Q84WL6-1", "length": 338, "uniprot_id": "WDL3_ARATH", "protein_name": "Protein WVD2-like 3", "refseq_ac": "NP_001326991", "refseq_name": "TPX2 (targeting protein for Xklp2) protein family", "gene_name": "WDL3", "gene_names_uniprotkb": "WDL3; MXC7.13", "gene_names_refseq": "WDL3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WL6", "url": "https://www.uniprot.org/uniprotkb/Q84WL6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYATSGAKSAKSRTVVTAAP", "down_seq": "FRSTERAEKRKEFYTKLEEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WL6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WL6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser195" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "195", "end_pos": "195" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WU4-1.113.113", "start_pos": 113, "end_pos": 113, "uniprot_canonical_ac": "Q84WU4-1", "length": 712, "uniprot_id": "GOGC3_ARATH", "protein_name": "Golgin candidate 3", "refseq_ac": "NP_191716", "refseq_name": "GRIP-related ARF-binding domain-containing protein 1", "gene_name": "GC3; GDAP1", "gene_names_uniprotkb": "GC3; GDAP1; F2A19.170; GC3; GDAP1; GOLGIN CANDIDATE 3", "gene_names_refseq": "GC3; GDAP1; GOLGIN CANDIDATE 3; GRIP-related ARF-binding domain-containing protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WU4", "url": "https://www.uniprot.org/uniprotkb/Q84WU4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WU4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WU4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YAALLREKEDQISRLNQENG", "down_seq": "LKQNLTSTSAALKEARTDIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WU4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WU4" } ], "site_lbl": "Ser113" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "119", "end_pos": "119" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q84WU4-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WU4-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "Q84WU4-1", "length": 712, "uniprot_id": "GOGC3_ARATH", "protein_name": "Golgin candidate 3", "refseq_ac": "NP_191716", "refseq_name": "GRIP-related ARF-binding domain-containing protein 1", "gene_name": "GC3; GDAP1", "gene_names_uniprotkb": "GC3; GDAP1; F2A19.170; GC3; GDAP1; GOLGIN CANDIDATE 3", "gene_names_refseq": "GC3; GDAP1; GOLGIN CANDIDATE 3; GRIP-related ARF-binding domain-containing protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WU4", "url": "https://www.uniprot.org/uniprotkb/Q84WU4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WU4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WU4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EKEDQISRLNQENGSLKQNL", "down_seq": "STSAALKEARTDISRGSNNY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WU4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WU4" } ], "site_lbl": "Thr119" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "119", "end_pos": "119" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q84WU4-1.113.113", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84J70-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "Q84J70-1", "length": 223, "uniprot_id": "DI193_ARATH", "protein_name": "Protein DEHYDRATION-INDUCED 19 homolog 3", "refseq_ac": "NP_187221", "refseq_name": "Drought-responsive family protein", "gene_name": "DI19-3; DIL9-3", "gene_names_uniprotkb": "DI19-3; DIL9-3; F18C1.3; F18C1_3", "gene_names_refseq": "F18C1.3; F18C1_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84J70", "url": "https://www.uniprot.org/uniprotkb/Q84J70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84J70", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84J70" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84J70", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84J70", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLQHANIFKMHRKRKPRRGG", "down_seq": "YSTLSILRREFPDGNFQSLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84J70", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84J70" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser111" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q84J70-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q84J70-1.116.116", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84J70-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "Q84J70-1", "length": 223, "uniprot_id": "DI193_ARATH", "protein_name": "Protein DEHYDRATION-INDUCED 19 homolog 3", "refseq_ac": "NP_187221", "refseq_name": "Drought-responsive family protein", "gene_name": "DI19-3; DIL9-3", "gene_names_uniprotkb": "DI19-3; DIL9-3; F18C1.3; F18C1_3", "gene_names_refseq": "F18C1.3; F18C1_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84J70", "url": "https://www.uniprot.org/uniprotkb/Q84J70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84J70", "url": "https://www.uniprot.org/uniprotkb/Q84J70", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HANIFKMHRKRKPRRGGSYS", "down_seq": "LSILRREFPDGNFQSLFGGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q84J70", "url": "https://www.uniprot.org/uniprotkb/Q84J70" } ], "site_lbl": "Thr114" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q84J70-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q84J70-1.116.116", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84J70-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "Q84J70-1", "length": 223, "uniprot_id": "DI193_ARATH", "protein_name": "Protein DEHYDRATION-INDUCED 19 homolog 3", "refseq_ac": "NP_187221", "refseq_name": "Drought-responsive family protein", "gene_name": "DI19-3; DIL9-3", "gene_names_uniprotkb": "DI19-3; DIL9-3; F18C1.3; F18C1_3", "gene_names_refseq": "F18C1.3; F18C1_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84J70", "url": "https://www.uniprot.org/uniprotkb/Q84J70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q84J70", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84J70" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q84J70", "url": "https://www.uniprot.org/uniprotkb/Q84J70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q84J70", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84J70", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NIFKMHRKRKPRRGGSYSTL", "down_seq": "ILRREFPDGNFQSLFGGSSC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q84J70", "url": "https://www.uniprot.org/uniprotkb/Q84J70" }, { "database": "iPTMnet", "id": "Q84J70", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84J70" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser116" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q84J70-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q84J70-1.114.114", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84M95-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q84M95-1", "length": 375, "uniprot_id": "PBL28_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL28", "refseq_ac": "NP_001320422", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL28", "gene_names_uniprotkb": "PBL28; T23E23.18; T23E23_18", "gene_names_refseq": "T23E23.18; T23E23_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HPNLVSLIGYCADGKHRFLV", "down_seq": "EYMQNGNLQDHLNGIKEAKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ], "site_lbl": "Tyr152" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84M95-1.245.245", "start_pos": 245, "end_pos": 245, "uniprot_canonical_ac": "Q84M95-1", "length": 375, "uniprot_id": "PBL28_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL28", "refseq_ac": "NP_001320422", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL28", "gene_names_uniprotkb": "PBL28; T23E23.18; T23E23_18", "gene_names_refseq": "T23E23.18; T23E23_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLAKLMPEGKDTCVTARVLG", "down_seq": "FGYFDPEYTSTGKLTLQSDI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ], "site_lbl": "Thr245" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q84M95-1.253.253", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84M95-1.253.253", "start_pos": 253, "end_pos": 253, "uniprot_canonical_ac": "Q84M95-1", "length": 375, "uniprot_id": "PBL28_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL28", "refseq_ac": "NP_001320422", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL28", "gene_names_uniprotkb": "PBL28; T23E23.18; T23E23_18", "gene_names_refseq": "T23E23.18; T23E23_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GKDTCVTARVLGTFGYFDPE", "down_seq": "TSTGKLTLQSDIYAFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ], "site_lbl": "Tyr253" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q84M95-1.245.245", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84M95-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q84M95-1", "length": 375, "uniprot_id": "PBL28_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL28", "refseq_ac": "NP_001320422", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL28", "gene_names_uniprotkb": "PBL28; T23E23.18; T23E23_18", "gene_names_refseq": "T23E23.18; T23E23_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WQIEDQASQPRKRRFGSSVY", "down_seq": "LKEMEEATSSFSDENLLGKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q84M95", "url": "https://www.uniprot.org/uniprotkb/Q84M95" } ], "site_lbl": "Thr65" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXI9-1.294.294", "start_pos": 294, "end_pos": 294, "uniprot_canonical_ac": "Q8GXI9-1", "length": 357, "uniprot_id": "PV42B_ARATH", "protein_name": "SNF1-related protein kinase regulatory subunit gamma-like PV42b", "refseq_ac": "NP_001319425", "refseq_name": "Cystathionine beta-synthase (CBS) family protein", "gene_name": "CBSX4; PV42B", "gene_names_uniprotkb": "CBSX4; PV42B; CBSX4; F18B13.17; F18B13.42; F18B13_17", "gene_names_refseq": "CBS domain containing protein 4; CBSX4; F18B13.17; F18B13_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXI9", "url": "https://www.uniprot.org/uniprotkb/Q8GXI9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NALEFVEKIPRTLLFTAATS", "down_seq": "PGRELVTCHVTSTLAQVIHM", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr294", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNR2-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "Q0WNR2-1", "length": 441, "uniprot_id": "BH090_ARATH", "protein_name": "Transcription factor bHLH90", "refseq_ac": "NP_172531", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "BHLH90", "gene_names_uniprotkb": "BHLH90; EN50; F20B24.4; F20B24.5; T10O24.26", "gene_names_refseq": "F20B24.5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNR2", "url": "https://www.uniprot.org/uniprotkb/Q0WNR2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNR2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QTPCLIMNKEKDVVVQNAND", "down_seq": "KANKKLLPTENFKSKNLHSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNR2" } ], "site_lbl": "Ser249" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "249", "end_pos": "249" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXC2-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "Q8GXC2-1", "length": 397, "uniprot_id": "PHL4_ARATH", "protein_name": "Myb family transcription factor PHL4", "refseq_ac": "NP_179630", "refseq_name": "myb-like HTH transcriptional regulator family protein", "gene_name": "PHL4", "gene_names_uniprotkb": "PHL4; F11A3.5; F11A3_5", "gene_names_refseq": "F11A3.5; F11A3_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXC2", "url": "https://www.uniprot.org/uniprotkb/Q8GXC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QPQAVLQQPSSCVELRPLDR", "down_seq": "VSSNSNNNSNSNNAAAAAKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr212" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "387", "end_pos": "387" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8GXC2-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GXC2-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8GXC2-1.223.223", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXC2-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "Q8GXC2-1", "length": 397, "uniprot_id": "PHL4_ARATH", "protein_name": "Myb family transcription factor PHL4", "refseq_ac": "NP_179630", "refseq_name": "myb-like HTH transcriptional regulator family protein", "gene_name": "PHL4", "gene_names_uniprotkb": "PHL4; F11A3.5; F11A3_5", "gene_names_refseq": "F11A3.5; F11A3_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXC2", "url": "https://www.uniprot.org/uniprotkb/Q8GXC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVLQQPSSCVELRPLDRTVS", "down_seq": "NSNNNSNSNNAAAAAKGRMR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser215" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "387", "end_pos": "387" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8GXC2-1.212.212", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GXC2-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GXC2-1.223.223", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXC2-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "Q8GXC2-1", "length": 397, "uniprot_id": "PHL4_ARATH", "protein_name": "Myb family transcription factor PHL4", "refseq_ac": "NP_179630", "refseq_name": "myb-like HTH transcriptional regulator family protein", "gene_name": "PHL4", "gene_names_uniprotkb": "PHL4; F11A3.5; F11A3_5", "gene_names_refseq": "F11A3.5; F11A3_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXC2", "url": "https://www.uniprot.org/uniprotkb/Q8GXC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQQPSSCVELRPLDRTVSSN", "down_seq": "NNNSNSNNAAAAAKGRMRWT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser217" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "387", "end_pos": "387" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8GXC2-1.212.212", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GXC2-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GXC2-1.223.223", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXC2-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q8GXC2-1", "length": 397, "uniprot_id": "PHL4_ARATH", "protein_name": "Myb family transcription factor PHL4", "refseq_ac": "NP_179630", "refseq_name": "myb-like HTH transcriptional regulator family protein", "gene_name": "PHL4", "gene_names_uniprotkb": "PHL4; F11A3.5; F11A3_5", "gene_names_refseq": "F11A3.5; F11A3_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXC2", "url": "https://www.uniprot.org/uniprotkb/Q8GXC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CVELRPLDRTVSSNSNNNSN", "down_seq": "NNAAAAAKGRMRWTPELHEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser223" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "387", "end_pos": "387" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q8GXC2-1.212.212", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8GXC2-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GXC2-1.217.217", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXC2-1.387.387", "start_pos": 387, "end_pos": 387, "uniprot_canonical_ac": "Q8GXC2-1", "length": 397, "uniprot_id": "PHL4_ARATH", "protein_name": "Myb family transcription factor PHL4", "refseq_ac": "NP_179630", "refseq_name": "myb-like HTH transcriptional regulator family protein", "gene_name": "PHL4", "gene_names_uniprotkb": "PHL4; F11A3.5; F11A3_5", "gene_names_refseq": "F11A3.5; F11A3_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXC2", "url": "https://www.uniprot.org/uniprotkb/Q8GXC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXC2", "url": "https://www.uniprot.org/uniprotkb/Q8GXC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEQGEKTSAKTPENGSEESE", "down_seq": "PRPKRPRNEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXC2", "url": "https://www.uniprot.org/uniprotkb/Q8GXC2" }, { "database": "iPTMnet", "id": "Q8GXC2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXC2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser387" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "387", "end_pos": "387" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H780-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "Q8H780-1", "length": 430, "uniprot_id": "SCP13_ARATH", "protein_name": "Serine carboxypeptidase-like 13", "refseq_ac": "NP_001031402", "refseq_name": "serine carboxypeptidase-like 13", "gene_name": "SCPL13", "gene_names_uniprotkb": "SCPL13; F21P24.4; T20K9.20", "gene_names_refseq": "SCPL13; T20K9.20; serine carboxypeptidase-like 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H780", "url": "https://www.uniprot.org/uniprotkb/Q8H780" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8H780", "url": "https://www.uniprot.org/uniprotkb/Q8H780", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSLTGLLFENGPVALKFEVY", "down_seq": "GSVPSLVSTTYSWTKMANII", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn102", "evidence": [ { "id": "Q8H780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H780#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8H780-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "Q8H780-1", "length": 430, "uniprot_id": "SCP13_ARATH", "protein_name": "Serine carboxypeptidase-like 13", "refseq_ac": "NP_001031402", "refseq_name": "serine carboxypeptidase-like 13", "gene_name": "SCPL13", "gene_names_uniprotkb": "SCPL13; F21P24.4; T20K9.20", "gene_names_refseq": "SCPL13; T20K9.20; serine carboxypeptidase-like 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H780", "url": "https://www.uniprot.org/uniprotkb/Q8H780" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8H780", "url": "https://www.uniprot.org/uniprotkb/Q8H780", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DITSPDCFLYRYTLITFWAN", "down_seq": "KSVREALQVNKGSIGKWVQC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn299", "evidence": [ { "id": "Q8H780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H780#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8H780-1.323.323", "start_pos": 323, "end_pos": 323, "uniprot_canonical_ac": "Q8H780-1", "length": 430, "uniprot_id": "SCP13_ARATH", "protein_name": "Serine carboxypeptidase-like 13", "refseq_ac": "NP_001031402", "refseq_name": "serine carboxypeptidase-like 13", "gene_name": "SCPL13", "gene_names_uniprotkb": "SCPL13; F21P24.4; T20K9.20", "gene_names_refseq": "SCPL13; T20K9.20; serine carboxypeptidase-like 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H780", "url": "https://www.uniprot.org/uniprotkb/Q8H780" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8H780", "url": "https://www.uniprot.org/uniprotkb/Q8H780", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "REALQVNKGSIGKWVQCNYK", "down_seq": "ISYNYDIKSSVAYHMKNSID", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn323", "evidence": [ { "id": "Q8H780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H780#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8H780-1.371.371", "start_pos": 371, "end_pos": 371, "uniprot_canonical_ac": "Q8H780-1", "length": 430, "uniprot_id": "SCP13_ARATH", "protein_name": "Serine carboxypeptidase-like 13", "refseq_ac": "NP_001031402", "refseq_name": "serine carboxypeptidase-like 13", "gene_name": "SCPL13", "gene_names_uniprotkb": "SCPL13; F21P24.4; T20K9.20", "gene_names_refseq": "SCPL13; T20K9.20; serine carboxypeptidase-like 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H780", "url": "https://www.uniprot.org/uniprotkb/Q8H780" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8H780", "url": "https://www.uniprot.org/uniprotkb/Q8H780", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NGDHDMMVPFLATQAWIRSL", "down_seq": "YSITDDWKPWMINDQIAGYT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn371", "evidence": [ { "id": "Q8H780", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8H780#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GUJ1-1.334.334", "start_pos": 334, "end_pos": 334, "uniprot_canonical_ac": "Q8GUJ1-1", "length": 353, "uniprot_id": "UXT2_ARATH", "protein_name": "UDP-xylose transporter 2", "refseq_ac": "NP_001154542", "refseq_name": "Nucleotide/sugar transporter family protein", "gene_name": "UXT2", "gene_names_uniprotkb": "UXT2; T6B20.18; T6B20_18", "gene_names_refseq": "T6B20.18; T6B20_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUJ1", "url": "https://www.uniprot.org/uniprotkb/Q8GUJ1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GUJ1", "url": "https://www.uniprot.org/uniprotkb/Q8GUJ1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QMDENEKDPLVSAENGSGLI", "down_seq": "DNGVQKQDPVWNSNKDFQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GUJ1", "url": "https://www.uniprot.org/uniprotkb/Q8GUJ1" } ], "site_lbl": "Ser334" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "334", "end_pos": "334" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84RK2-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "Q84RK2-1", "length": 398, "uniprot_id": "FAP2_ARATH", "protein_name": "Fatty-acid-binding protein 2", "refseq_ac": "NP_001189606", "refseq_name": "Chalcone-flavanone isomerase family protein", "gene_name": "FAP2", "gene_names_uniprotkb": "FAP2; AtFAP2; T1D16.5; T1D16_5; fatty-acid-binding protein 2", "gene_names_refseq": "AtFAP2; FAP2; T1D16.5; T1D16_5; fatty-acid-binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84RK2", "url": "https://www.uniprot.org/uniprotkb/Q84RK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84RK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84RK2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QVGCEEYSGLSFQKLDWTRQ", "down_seq": "VEPRTGIEFPMLLKENASRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84RK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84RK2" } ], "site_lbl": "Ser191" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "191", "end_pos": "191" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GZD4-1.548.548", "start_pos": 548, "end_pos": 548, "uniprot_canonical_ac": "Q8GZD4-1", "length": 551, "uniprot_id": "NAT3_ARATH", "protein_name": "Nucleobase-ascorbate transporter 3", "refseq_ac": "NP_180219", "refseq_name": "Xanthine/uracil permease family protein", "gene_name": "NAT3; PDE135", "gene_names_uniprotkb": "NAT3; PDE135; NAT3; T9J22.18; T9J22_18; pigment defective embryo 135", "gene_names_refseq": "NAT3; PDE135; T9J22.18; T9J22_18; nucleobase ascorbate transporter 3; pigment defective embryo 135", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZD4", "url": "https://www.uniprot.org/uniprotkb/Q8GZD4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GZD4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZD4" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8GZD4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZD4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GDGRNDEFYSMPLRINELMP", "down_seq": "RFL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GZD4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZD4" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr548" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUU2-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q8GUU2-1", "length": 359, "uniprot_id": "RIE1_ARATH", "protein_name": "E3 ubiquitin protein ligase RIE1", "refseq_ac": "NP_849924", "refseq_name": "RING-finger protein for embryogenesi", "gene_name": "RIE1", "gene_names_uniprotkb": "RIE1; T8O11", "gene_names_refseq": "RIE1; RING-finger protein for embryogenesis", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUU2", "url": "https://www.uniprot.org/uniprotkb/Q8GUU2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8GUU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUU2" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q8GUU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUU2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LPCNHHFHSTCIVKWLKMRA", "down_seq": "CPLCKYNILKGTTDQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUU2" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr343" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA5-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "Q84MA5-1", "length": 594, "uniprot_id": "CAAT1_ARATH", "protein_name": "Cationic amino acid transporter 1", "refseq_ac": "NP_193844", "refseq_name": "amino acid transporter 1", "gene_name": "AAT1; CAT1", "gene_names_uniprotkb": "AAT1; CAT1; AAT1; AtCAT1; CAT1; F7J7.60; F7J7_60; amino acid transporter 1", "gene_names_refseq": "AAT1; AtCAT1; CAT1; CATIONIC AMINO ACID TRANSPORTER 1; F7J7.60; F7J7_60; amino acid transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FGIGAVIGSGIFVLTGLEAR", "down_seq": "HSGPAVVLSYVVSGVSAMLS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn102", "evidence": [ { "id": "Q84MA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84MA5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "255", "end_pos": "255" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84MA5-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "Q84MA5-1", "length": 594, "uniprot_id": "CAAT1_ARATH", "protein_name": "Cationic amino acid transporter 1", "refseq_ac": "NP_193844", "refseq_name": "amino acid transporter 1", "gene_name": "AAT1; CAT1", "gene_names_uniprotkb": "AAT1; CAT1; AAT1; AtCAT1; CAT1; F7J7.60; F7J7_60; amino acid transporter 1", "gene_names_refseq": "AAT1; AtCAT1; CAT1; CATIONIC AMINO ACID TRANSPORTER 1; F7J7.60; F7J7_60; amino acid transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IHMVVILFVIIAGFTKADVK", "down_seq": "YSDFTPYGVRGVFKSAAVLF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn255", "evidence": [ { "id": "Q84MA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84MA5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "255", "end_pos": "255" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84MA5-1.444.444", "start_pos": 444, "end_pos": 444, "uniprot_canonical_ac": "Q84MA5-1", "length": 594, "uniprot_id": "CAAT1_ARATH", "protein_name": "Cationic amino acid transporter 1", "refseq_ac": "NP_193844", "refseq_name": "amino acid transporter 1", "gene_name": "AAT1; CAT1", "gene_names_uniprotkb": "AAT1; CAT1; AAT1; AtCAT1; CAT1; F7J7.60; F7J7_60; amino acid transporter 1", "gene_names_refseq": "AAT1; AtCAT1; CAT1; CATIONIC AMINO ACID TRANSPORTER 1; F7J7.60; F7J7_60; amino acid transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LSVSTLFIFMFVAVALLVRR", "down_seq": "YVTGETSTRDRNKFLVFLGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr444" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "255", "end_pos": "255" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q84MA5-1.445.445", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q84MA5-1.447.447", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q84MA5-1.450.450", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q84MA5-1.451.451", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA5-1.445.445", "start_pos": 445, "end_pos": 445, "uniprot_canonical_ac": "Q84MA5-1", "length": 594, "uniprot_id": "CAAT1_ARATH", "protein_name": "Cationic amino acid transporter 1", "refseq_ac": "NP_193844", "refseq_name": "amino acid transporter 1", "gene_name": "AAT1; CAT1", "gene_names_uniprotkb": "AAT1; CAT1; AAT1; AtCAT1; CAT1; F7J7.60; F7J7_60; amino acid transporter 1", "gene_names_refseq": "AAT1; AtCAT1; CAT1; CATIONIC AMINO ACID TRANSPORTER 1; F7J7.60; F7J7_60; amino acid transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SVSTLFIFMFVAVALLVRRY", "down_seq": "VTGETSTRDRNKFLVFLGLI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr445" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "255", "end_pos": "255" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q84MA5-1.444.444", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q84MA5-1.447.447", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q84MA5-1.450.450", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q84MA5-1.451.451", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA5-1.447.447", "start_pos": 447, "end_pos": 447, "uniprot_canonical_ac": "Q84MA5-1", "length": 594, "uniprot_id": "CAAT1_ARATH", "protein_name": "Cationic amino acid transporter 1", "refseq_ac": "NP_193844", "refseq_name": "amino acid transporter 1", "gene_name": "AAT1; CAT1", "gene_names_uniprotkb": "AAT1; CAT1; AAT1; AtCAT1; CAT1; F7J7.60; F7J7_60; amino acid transporter 1", "gene_names_refseq": "AAT1; AtCAT1; CAT1; CATIONIC AMINO ACID TRANSPORTER 1; F7J7.60; F7J7_60; amino acid transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "STLFIFMFVAVALLVRRYYV", "down_seq": "GETSTRDRNKFLVFLGLILA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr447" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "255", "end_pos": "255" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q84MA5-1.444.444", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q84MA5-1.445.445", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q84MA5-1.450.450", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q84MA5-1.451.451", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA5-1.450.450", "start_pos": 450, "end_pos": 450, "uniprot_canonical_ac": "Q84MA5-1", "length": 594, "uniprot_id": "CAAT1_ARATH", "protein_name": "Cationic amino acid transporter 1", "refseq_ac": "NP_193844", "refseq_name": "amino acid transporter 1", "gene_name": "AAT1; CAT1", "gene_names_uniprotkb": "AAT1; CAT1; AAT1; AtCAT1; CAT1; F7J7.60; F7J7_60; amino acid transporter 1", "gene_names_refseq": "AAT1; AtCAT1; CAT1; CATIONIC AMINO ACID TRANSPORTER 1; F7J7.60; F7J7_60; amino acid transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FIFMFVAVALLVRRYYVTGE", "down_seq": "STRDRNKFLVFLGLILASST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr450" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "255", "end_pos": "255" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q84MA5-1.444.444", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q84MA5-1.445.445", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q84MA5-1.447.447", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q84MA5-1.451.451", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA5-1.451.451", "start_pos": 451, "end_pos": 451, "uniprot_canonical_ac": "Q84MA5-1", "length": 594, "uniprot_id": "CAAT1_ARATH", "protein_name": "Cationic amino acid transporter 1", "refseq_ac": "NP_193844", "refseq_name": "amino acid transporter 1", "gene_name": "AAT1; CAT1", "gene_names_uniprotkb": "AAT1; CAT1; AAT1; AtCAT1; CAT1; F7J7.60; F7J7_60; amino acid transporter 1", "gene_names_refseq": "AAT1; AtCAT1; CAT1; CATIONIC AMINO ACID TRANSPORTER 1; F7J7.60; F7J7_60; amino acid transporter 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA5", "url": "https://www.uniprot.org/uniprotkb/Q84MA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IFMFVAVALLVRRYYVTGET", "down_seq": "TRDRNKFLVFLGLILASSTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA5" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser451" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "255", "end_pos": "255" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q84MA5-1.444.444", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q84MA5-1.445.445", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q84MA5-1.447.447", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q84MA5-1.450.450", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6TPH1-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "Q6TPH1-1", "length": 458, "uniprot_id": "PPA23_ARATH", "protein_name": "Purple acid phosphatase 23", "refseq_ac": "NP_193106", "refseq_name": "purple acid phosphatase 23", "gene_name": "PAP23", "gene_names_uniprotkb": "PAP23; AT3; ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23", "gene_names_refseq": "ATPAP23; F18A5.90; F18A5_90; PAP23; purple acid phosphatase 23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IASEVWYGKEKGNYMLKKKG", "down_seq": "ATVYSQLYPSDGLLNYTSGI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn121", "evidence": [ { "id": "Q6TPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q6TPH1-1.136.136", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6TPH1-1.136.136", "start_pos": 136, "end_pos": 136, "uniprot_canonical_ac": "Q6TPH1-1", "length": 458, "uniprot_id": "PPA23_ARATH", "protein_name": "Purple acid phosphatase 23", "refseq_ac": "NP_193106", "refseq_name": "purple acid phosphatase 23", "gene_name": "PAP23", "gene_names_uniprotkb": "PAP23; AT3; ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23", "gene_names_refseq": "ATPAP23; F18A5.90; F18A5_90; PAP23; purple acid phosphatase 23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LKKKGNATVYSQLYPSDGLL", "down_seq": "YTSGIIHHVLIDGLEPETRY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn136", "evidence": [ { "id": "Q6TPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q6TPH1-1.121.121", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6TPH1-1.200.200", "start_pos": 200, "end_pos": 200, "uniprot_canonical_ac": "Q6TPH1-1", "length": 458, "uniprot_id": "PPA23_ARATH", "protein_name": "Purple acid phosphatase 23", "refseq_ac": "NP_193106", "refseq_name": "purple acid phosphatase 23", "gene_name": "PAP23", "gene_names_uniprotkb": "PAP23; AT3; ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23", "gene_names_refseq": "ATPAP23; F18A5.90; F18A5_90; PAP23; purple acid phosphatase 23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSKDAYPHRIAFVGDLGLTS", "down_seq": "TTTTIDHLMENDPSLVIIVG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn200", "evidence": [ { "id": "Q6TPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6TPH1-1.331.331", "start_pos": 331, "end_pos": 331, "uniprot_canonical_ac": "Q6TPH1-1", "length": 458, "uniprot_id": "PPA23_ARATH", "protein_name": "Purple acid phosphatase 23", "refseq_ac": "NP_193106", "refseq_name": "purple acid phosphatase 23", "gene_name": "PAP23", "gene_names_uniprotkb": "PAP23; AT3; ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23", "gene_names_refseq": "ATPAP23; F18A5.90; F18A5_90; PAP23; purple acid phosphatase 23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YYSFDAGGVHFVMLGAYVDY", "down_seq": "NTGLQYAWLKEDLSKVDRAV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn331", "evidence": [ { "id": "Q6TPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6TPH1-1.352.352", "start_pos": 352, "end_pos": 352, "uniprot_canonical_ac": "Q6TPH1-1", "length": 458, "uniprot_id": "PPA23_ARATH", "protein_name": "Purple acid phosphatase 23", "refseq_ac": "NP_193106", "refseq_name": "purple acid phosphatase 23", "gene_name": "PAP23", "gene_names_uniprotkb": "PAP23; AT3; ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23", "gene_names_refseq": "ATPAP23; F18A5.90; F18A5_90; PAP23; purple acid phosphatase 23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NTGLQYAWLKEDLSKVDRAV", "down_seq": "PWLVATMHPPWYNSYSSHYQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr352", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6TPH1-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q6TPH1-1", "length": 458, "uniprot_id": "PPA23_ARATH", "protein_name": "Purple acid phosphatase 23", "refseq_ac": "NP_193106", "refseq_name": "purple acid phosphatase 23", "gene_name": "PAP23", "gene_names_uniprotkb": "PAP23; AT3; ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23", "gene_names_refseq": "ATPAP23; F18A5.90; F18A5_90; PAP23; purple acid phosphatase 23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RVDIVFAGHVHAYERMNRIY", "down_seq": "YTLDPCGPVYITIGDGGNIE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn409", "evidence": [ { "id": "Q6TPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6TPH1-1.455.455", "start_pos": 455, "end_pos": 455, "uniprot_canonical_ac": "Q6TPH1-1", "length": 458, "uniprot_id": "PPA23_ARATH", "protein_name": "Purple acid phosphatase 23", "refseq_ac": "NP_193106", "refseq_name": "purple acid phosphatase 23", "gene_name": "PAP23", "gene_names_uniprotkb": "PAP23; AT3; ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23", "gene_names_refseq": "ATPAP23; F18A5.90; F18A5_90; PAP23; purple acid phosphatase 23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FADDPGKCHSSYDLFFFNSL", "down_seq": "LSN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn455", "evidence": [ { "id": "Q6TPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6TPH1-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "Q6TPH1-1", "length": 458, "uniprot_id": "PPA23_ARATH", "protein_name": "Purple acid phosphatase 23", "refseq_ac": "NP_193106", "refseq_name": "purple acid phosphatase 23", "gene_name": "PAP23", "gene_names_uniprotkb": "PAP23; AT3; ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23", "gene_names_refseq": "ATPAP23; F18A5.90; F18A5_90; PAP23; purple acid phosphatase 23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6TPH1", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSLRRGSDDLPMDHPRLRKR", "down_seq": "VSSDFPEQIALALSTPTSMW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn59", "evidence": [ { "id": "Q6TPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6TPH1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6R0G4-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q6R0G4-1", "length": 293, "uniprot_id": "RVE4_ARATH", "protein_name": "Protein REVEILLE 4", "refseq_ac": "NP_001031823", "refseq_name": "LHY/CCA1-like 1", "gene_name": "LCL1; RVE4", "gene_names_uniprotkb": "LCL1; RVE4; CCA1-like 1; F9G14.150; F9G14_150; LCL1; REVEILLE 4; RVE4", "gene_names_refseq": "F9G14.150; F9G14_150; LCL1; LHY/CCA1-like 1; REVEILLE 4; RVE4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R0G4", "url": "https://www.uniprot.org/uniprotkb/Q6R0G4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q6R0G4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R0G4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q6R0G4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R0G4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EAPEKKVRKAYTITKSRESW", "down_seq": "EGEHDKFLEALQLFDRDWKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R0G4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R0G4" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr52" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PQQ4-1.269.269", "start_pos": 269, "end_pos": 269, "uniprot_canonical_ac": "Q6PQQ4-1", "length": 584, "uniprot_id": "BBM_ARATH", "protein_name": "AP2-like ethylene-responsive transcription factor BBM", "refseq_ac": "NP_197245", "refseq_name": "Integrase-type DNA-binding superfamily protein", "gene_name": "BBM", "gene_names_uniprotkb": "BBM; AIL2; BABY BOOM; T10B6.90; T10B6_90", "gene_names_refseq": "BABY BOOM; BBM; T10B6.90; T10B6_90", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6PQQ4", "url": "https://www.uniprot.org/uniprotkb/Q6PQQ4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YDKEEKAARAYDLAALKYWG", "down_seq": "TTTTNFPLSEYEKEVEEMKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr269" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "269", "end_pos": "269" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "278", "end_pos": "278" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q6PQQ4-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q6PQQ4-1.278.278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PQQ4-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q6PQQ4-1", "length": 584, "uniprot_id": "BBM_ARATH", "protein_name": "AP2-like ethylene-responsive transcription factor BBM", "refseq_ac": "NP_197245", "refseq_name": "Integrase-type DNA-binding superfamily protein", "gene_name": "BBM", "gene_names_uniprotkb": "BBM; AIL2; BABY BOOM; T10B6.90; T10B6_90", "gene_names_refseq": "BABY BOOM; BBM; T10B6.90; T10B6_90", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6PQQ4", "url": "https://www.uniprot.org/uniprotkb/Q6PQQ4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EEKAARAYDLAALKYWGTTT", "down_seq": "TNFPLSEYEKEVEEMKHMTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr272" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "269", "end_pos": "269" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "278", "end_pos": "278" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6PQQ4-1.269.269", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6PQQ4-1.278.278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PQQ4-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "Q6PQQ4-1", "length": 584, "uniprot_id": "BBM_ARATH", "protein_name": "AP2-like ethylene-responsive transcription factor BBM", "refseq_ac": "NP_197245", "refseq_name": "Integrase-type DNA-binding superfamily protein", "gene_name": "BBM", "gene_names_uniprotkb": "BBM; AIL2; BABY BOOM; T10B6.90; T10B6_90", "gene_names_refseq": "BABY BOOM; BBM; T10B6.90; T10B6_90", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6PQQ4", "url": "https://www.uniprot.org/uniprotkb/Q6PQQ4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AYDLAALKYWGTTTTTNFPL", "down_seq": "EYEKEVEEMKHMTRQEYVAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6PQQ4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PQQ4" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser278" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "269", "end_pos": "269" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "278", "end_pos": "278" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q6PQQ4-1.269.269", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q6PQQ4-1.272.272", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKKLPLTRPKSPKLILSRRK", "down_seq": "FSDAVSSSSREEILKTVSNR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser218" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8GYX9-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GYX9-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLPLTRPKSPKLILSRRKSF", "down_seq": "DAVSSSSREEILKTVSNRNR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GYX9-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GYX9-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPKSPKLILSRRKSFSDAVS", "down_seq": "SSREEILKTVSNRNRHSTGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser225" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GYX9-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GYX9-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8GYX9-1.242.242", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVSSSSREEILKTVSNRNRH", "down_seq": "TGTVQNKDDDHRNKNTNAAH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser242" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q8GYX9-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.264.264", "start_pos": 264, "end_pos": 264, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTVQNKDDDHRNKNTNAAHD", "down_seq": "PRVRSGKGKSGLKPVNESSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser264" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q8GYX9-1.282.282", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8GYX9-1.283.283", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HDSPRVRSGKGKSGLKPVNE", "down_seq": "SEEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser282" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q8GYX9-1.264.264", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GYX9-1.283.283", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.283.283", "start_pos": 283, "end_pos": 283, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSPRVRSGKGKSGLKPVNES", "down_seq": "EEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser283" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GYX9-1.264.264", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GYX9-1.282.282", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" }, { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RNADVSSARVHVAPKIAAEE", "down_seq": "DEEFEVKECTEEKSLSENAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr32" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FEVKECTEEKSLSENAPNVG", "down_seq": "AERVGAQKSPKTRNGNAKVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q8GYX9-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYX9-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q8GYX9-1", "length": 286, "uniprot_id": "WDL1_ARATH", "protein_name": "Protein WVD2-like 1", "refseq_ac": "NP_001319470", "refseq_name": "WVD2-like 1", "gene_name": "WDL1", "gene_names_uniprotkb": "WDL1; F7O18.11; F7O18_11; WVD2-like 1", "gene_names_refseq": "F7O18.11; F7O18_11; WDL1; WVD2-like 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYX9", "url": "https://www.uniprot.org/uniprotkb/Q8GYX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSLSENAPNVGSAERVGAQK", "down_seq": "PKTRNGNAKVSKQDAPLLAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYX9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8GYX9-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NQ54-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "Q6NQ54-1", "length": 115, "uniprot_id": "ENY2_ARATH", "protein_name": "Transcription and mRNA export factor ENY2", "refseq_ac": "NP_189346", "refseq_name": "transcription/mRNA export factor", "gene_name": "ENY2", "gene_names_uniprotkb": "ENY2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ54", "url": "https://www.uniprot.org/uniprotkb/Q6NQ54" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ54", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ54" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6NQ54", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ54", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MKHSVNRPP", "down_seq": "PDEDDVADGFEKDKVTLREI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ54", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ54" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr10" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84UV0-1.268.268", "start_pos": 268, "end_pos": 268, "uniprot_canonical_ac": "Q84UV0-1", "length": 569, "uniprot_id": "LINS_ARATH", "protein_name": "S-(+)-linalool synthase, chloroplastic", "refseq_ac": "NP_176361", "refseq_name": "terpene synthase 14", "gene_name": "TPS14", "gene_names_uniprotkb": "TPS14; ATTPS14; T13M11.3; T13M11_3; TERPENE SYNTHASE 14; terpene synthase 14", "gene_names_refseq": "ATTPS14; T13M11.3; T13M11_3; TERPENE SYNTHASE 14; TPS14; terpene synthase 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84UV0", "url": "https://www.uniprot.org/uniprotkb/Q84UV0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q84UV0-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "Q84UV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DPEWLQSLLRVAEIDSIRLK", "down_seq": "LTQGEMSQTFKWWTELGLEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84UV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Ser268" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "268", "end_pos": "268" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "277", "end_pos": "277" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q84UV0-1.270.270", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q84UV0-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q84UV0-1.277.277", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84UV0-1.270.270", "start_pos": 270, "end_pos": 270, "uniprot_canonical_ac": "Q84UV0-1", "length": 569, "uniprot_id": "LINS_ARATH", "protein_name": "S-(+)-linalool synthase, chloroplastic", "refseq_ac": "NP_176361", "refseq_name": "terpene synthase 14", "gene_name": "TPS14", "gene_names_uniprotkb": "TPS14; ATTPS14; T13M11.3; T13M11_3; TERPENE SYNTHASE 14; terpene synthase 14", "gene_names_refseq": "ATTPS14; T13M11.3; T13M11_3; TERPENE SYNTHASE 14; TPS14; terpene synthase 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84UV0", "url": "https://www.uniprot.org/uniprotkb/Q84UV0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q84UV0-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "Q84UV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EWLQSLLRVAEIDSIRLKSL", "down_seq": "QGEMSQTFKWWTELGLEKDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84UV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Thr270" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "268", "end_pos": "268" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "277", "end_pos": "277" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q84UV0-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q84UV0-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q84UV0-1.277.277", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84UV0-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "Q84UV0-1", "length": 569, "uniprot_id": "LINS_ARATH", "protein_name": "S-(+)-linalool synthase, chloroplastic", "refseq_ac": "NP_176361", "refseq_name": "terpene synthase 14", "gene_name": "TPS14", "gene_names_uniprotkb": "TPS14; ATTPS14; T13M11.3; T13M11_3; TERPENE SYNTHASE 14; terpene synthase 14", "gene_names_refseq": "ATTPS14; T13M11.3; T13M11_3; TERPENE SYNTHASE 14; TPS14; terpene synthase 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84UV0", "url": "https://www.uniprot.org/uniprotkb/Q84UV0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q84UV0-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "Q84UV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLRVAEIDSIRLKSLTQGEM", "down_seq": "QTFKWWTELGLEKDVEKARS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84UV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Ser275" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "268", "end_pos": "268" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "277", "end_pos": "277" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q84UV0-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q84UV0-1.270.270", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q84UV0-1.277.277", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84UV0-1.277.277", "start_pos": 277, "end_pos": 277, "uniprot_canonical_ac": "Q84UV0-1", "length": 569, "uniprot_id": "LINS_ARATH", "protein_name": "S-(+)-linalool synthase, chloroplastic", "refseq_ac": "NP_176361", "refseq_name": "terpene synthase 14", "gene_name": "TPS14", "gene_names_uniprotkb": "TPS14; ATTPS14; T13M11.3; T13M11_3; TERPENE SYNTHASE 14; terpene synthase 14", "gene_names_refseq": "ATTPS14; T13M11.3; T13M11_3; TERPENE SYNTHASE 14; TPS14; terpene synthase 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84UV0", "url": "https://www.uniprot.org/uniprotkb/Q84UV0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q84UV0-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "Q84UV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RVAEIDSIRLKSLTQGEMSQ", "down_seq": "FKWWTELGLEKDVEKARSQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84UV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84UV0" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Thr277" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "268", "end_pos": "268" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "277", "end_pos": "277" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q84UV0-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q84UV0-1.270.270", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q84UV0-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NQL4-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q6NQL4-1", "length": 291, "uniprot_id": "KDSA2_ARATH", "protein_name": "2-dehydro-3-deoxyphosphooctonate aldolase 2", "refseq_ac": "NP_001031055", "refseq_name": "Aldolase superfamily protein", "gene_name": "ATKDSA2; KDSA2", "gene_names_uniprotkb": "ATKDSA2; KDSA2; ATKSDA; AtKDO8PS; F3O9.14; F3O9_14; kdsA", "gene_names_refseq": "ATKDSA2; ATKSDA; AtKDO8PS; F3O9.14; F3O9_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQL4", "url": "https://www.uniprot.org/uniprotkb/Q6NQL4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQL4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGLPLVFKSSFDKANRTSSK", "down_seq": "FRGPGMAEGLKILEKVKVAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NQL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQL4" } ], "site_lbl": "Ser67" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8H0Z6-1.115.115", "start_pos": 115, "end_pos": 115, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAAAAEFISNDAPMKLRRRN", "down_seq": "ETLRAQYINNKEIRVCVGTW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser115" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.209.209", "start_pos": 209, "end_pos": 209, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EEVIREALNRVRPKLSGVKS", "down_seq": "SDPPSPGRFKPFEETHDIIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr209" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8H0Z6-1.210.210", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8H0Z6-1.214.214", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.210.210", "start_pos": 210, "end_pos": 210, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" }, { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVIREALNRVRPKLSGVKSY", "down_seq": "DPPSPGRFKPFEETHDIIEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser210" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8H0Z6-1.209.209", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8H0Z6-1.214.214", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" }, { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EALNRVRPKLSGVKSYSDPP", "down_seq": "PGRFKPFEETHDIIEEEVAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser214" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8H0Z6-1.209.209", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8H0Z6-1.210.210", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKTLVDPNTGLPVVEIKRQF", "down_seq": "IPKKLDRQLCLRADSFKGIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser291" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q8H0Z6-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8H0Z6-1.311.311", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" }, { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IKRQFSIPKKLDRQLCLRAD", "down_seq": "FKGISDDDSTQTGMKTINRM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser306" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q8H0Z6-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8H0Z6-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8H0Z6-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8H0Z6-1.316.316", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8H0Z6-1.318.318", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" }, { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SIPKKLDRQLCLRADSFKGI", "down_seq": "DDDSTQTGMKTINRMLSGKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser311" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8H0Z6-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8H0Z6-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8H0Z6-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8H0Z6-1.316.316", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8H0Z6-1.318.318", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" }, { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLDRQLCLRADSFKGISDDD", "down_seq": "TQTGMKTINRMLSGKERIGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser315" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8H0Z6-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8H0Z6-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8H0Z6-1.316.316", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8H0Z6-1.318.318", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" }, { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LDRQLCLRADSFKGISDDDS", "down_seq": "QTGMKTINRMLSGKERIGLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr316" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8H0Z6-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8H0Z6-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8H0Z6-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8H0Z6-1.318.318", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.318.318", "start_pos": 318, "end_pos": 318, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" }, { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RQLCLRADSFKGISDDDSTQ", "down_seq": "GMKTINRMLSGKERIGLSWP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr318" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8H0Z6-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8H0Z6-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8H0Z6-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8H0Z6-1.316.316", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z6-1.500.500", "start_pos": 500, "end_pos": 500, "uniprot_canonical_ac": "Q8H0Z6-1", "length": 664, "uniprot_id": "IP5P3_ARATH", "protein_name": "Type IV inositol polyphosphate 5-phosphatase 3", "refseq_ac": "NP_565023", "refseq_name": "DNAse I-like superfamily protein", "gene_name": "IP5P3", "gene_names_uniprotkb": "IP5P3; F14O23.9; F14O23_9; F26A9.1", "gene_names_refseq": "F14O23.9; F14O23_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z6", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDQIKRNADVHEIHKRTVFH", "down_seq": "VSALGLPKLIYDHERIIWLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z6" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser500" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "500", "end_pos": "500" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7X9I4-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "Q7X9I4-1", "length": 472, "uniprot_id": "ERO2_ARATH", "protein_name": "Endoplasmic reticulum oxidoreductin-2", "refseq_ac": "NP_181430", "refseq_name": "endoplasmic reticulum oxidoreductins 2", "gene_name": "AERO2; ERO2", "gene_names_uniprotkb": "AERO2; ERO2; AERO2; ERO2; T7F6.13; T7F6_13", "gene_names_refseq": "AERO2; ERO2; T7F6.13; T7F6_13; endoplasmic reticulum oxidoreductins 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7X9I4", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7X9I4", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ISVHIASDYLLDEATNLWGQ", "down_seq": "LTLLYDRVLRYPDRVQNLYF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn267", "evidence": [ { "id": "Q7X9I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "44", "end_pos": "44" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7X9I4-1.364.364", "start_pos": 364, "end_pos": 364, "uniprot_canonical_ac": "Q7X9I4-1", "length": 472, "uniprot_id": "ERO2_ARATH", "protein_name": "Endoplasmic reticulum oxidoreductin-2", "refseq_ac": "NP_181430", "refseq_name": "endoplasmic reticulum oxidoreductins 2", "gene_name": "AERO2; ERO2", "gene_names_uniprotkb": "AERO2; ERO2; AERO2; ERO2; T7F6.13; T7F6_13", "gene_names_refseq": "AERO2; ERO2; T7F6.13; T7F6_13; endoplasmic reticulum oxidoreductins 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7X9I4", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7X9I4", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KLWKGQRGPELKQQLEKQFR", "down_seq": "ISAIMDCVGCEKCRLWGKLQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn364", "evidence": [ { "id": "Q7X9I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "44", "end_pos": "44" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7X9I4-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q7X9I4-1", "length": 472, "uniprot_id": "ERO2_ARATH", "protein_name": "Endoplasmic reticulum oxidoreductin-2", "refseq_ac": "NP_181430", "refseq_name": "endoplasmic reticulum oxidoreductins 2", "gene_name": "AERO2; ERO2", "gene_names_uniprotkb": "AERO2; ERO2; AERO2; ERO2; T7F6.13; T7F6_13", "gene_names_refseq": "AERO2; ERO2; T7F6.13; T7F6_13; endoplasmic reticulum oxidoreductins 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7X9I4", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7X9I4", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IGAIAAVLLAVVVAVFLNTQ", "down_seq": "SSISEFTGKICNCRQAEQQK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn44", "evidence": [ { "id": "Q7X9I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7X9I4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "44", "end_pos": "44" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8H0V4-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "Q8H0V4-1", "length": 722, "uniprot_id": "DUF7_ARATH", "protein_name": "DUF724 domain-containing protein 7", "refseq_ac": "NP_191789", "refseq_name": "agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)", "gene_name": "DUF7", "gene_names_uniprotkb": "DUF7; AIP1; ATDUF7; T17J13.260", "gene_names_refseq": "ATDUF7; DOMAIN OF UNKNOWN FUNCTION 724 7; DUF7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0V4", "url": "https://www.uniprot.org/uniprotkb/Q8H0V4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRPSIEWKDGIWHRKEKVSG", "down_seq": "EESSHAVEETAASTRIRITV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser296" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8H0V4-1.299.299", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0V4-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "Q8H0V4-1", "length": 722, "uniprot_id": "DUF7_ARATH", "protein_name": "DUF724 domain-containing protein 7", "refseq_ac": "NP_191789", "refseq_name": "agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)", "gene_name": "DUF7", "gene_names_uniprotkb": "DUF7; AIP1; ATDUF7; T17J13.260", "gene_names_refseq": "ATDUF7; DOMAIN OF UNKNOWN FUNCTION 724 7; DUF7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0V4", "url": "https://www.uniprot.org/uniprotkb/Q8H0V4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SIEWKDGIWHRKEKVSGSEE", "down_seq": "SHAVEETAASTRIRITVRTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser299" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8H0V4-1.296.296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0V4-1.489.489", "start_pos": 489, "end_pos": 489, "uniprot_canonical_ac": "Q8H0V4-1", "length": 722, "uniprot_id": "DUF7_ARATH", "protein_name": "DUF724 domain-containing protein 7", "refseq_ac": "NP_191789", "refseq_name": "agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)", "gene_name": "DUF7", "gene_names_uniprotkb": "DUF7; AIP1; ATDUF7; T17J13.260", "gene_names_refseq": "ATDUF7; DOMAIN OF UNKNOWN FUNCTION 724 7; DUF7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0V4", "url": "https://www.uniprot.org/uniprotkb/Q8H0V4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QKIGVSGNNSKAATIEHADM", "down_seq": "DDDRPLASWVHTGNSSSGQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr489" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0V4-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q8H0V4-1", "length": 722, "uniprot_id": "DUF7_ARATH", "protein_name": "DUF724 domain-containing protein 7", "refseq_ac": "NP_191789", "refseq_name": "agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)", "gene_name": "DUF7", "gene_names_uniprotkb": "DUF7; AIP1; ATDUF7; T17J13.260", "gene_names_refseq": "ATDUF7; DOMAIN OF UNKNOWN FUNCTION 724 7; DUF7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0V4", "url": "https://www.uniprot.org/uniprotkb/Q8H0V4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MLL", "down_seq": "TGRKEKLSVSKGSEIEISSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "site_lbl": "Thr4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8H0V4-1.5.5", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8H0V4-1.513.513", "start_pos": 513, "end_pos": 513, "uniprot_canonical_ac": "Q8H0V4-1", "length": 722, "uniprot_id": "DUF7_ARATH", "protein_name": "DUF724 domain-containing protein 7", "refseq_ac": "NP_191789", "refseq_name": "agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)", "gene_name": "DUF7", "gene_names_uniprotkb": "DUF7; AIP1; ATDUF7; T17J13.260", "gene_names_refseq": "ATDUF7; DOMAIN OF UNKNOWN FUNCTION 724 7; DUF7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0V4", "url": "https://www.uniprot.org/uniprotkb/Q8H0V4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RPLASWVHTGNSSSGQSVSR", "down_seq": "PDIGLNTVVEKHVDIVETPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr513" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q8H0V4-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0V4-1.531.531", "start_pos": 531, "end_pos": 531, "uniprot_canonical_ac": "Q8H0V4-1", "length": 722, "uniprot_id": "DUF7_ARATH", "protein_name": "DUF724 domain-containing protein 7", "refseq_ac": "NP_191789", "refseq_name": "agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)", "gene_name": "DUF7", "gene_names_uniprotkb": "DUF7; AIP1; ATDUF7; T17J13.260", "gene_names_refseq": "ATDUF7; DOMAIN OF UNKNOWN FUNCTION 724 7; DUF7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0V4", "url": "https://www.uniprot.org/uniprotkb/Q8H0V4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SRTPDIGLNTVVEKHVDIVE", "down_seq": "PPGRESTMVLPFVKKSQLWK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr531" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q8H0V4-1.513.513", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0V4-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "Q8H0V4-1", "length": 722, "uniprot_id": "DUF7_ARATH", "protein_name": "DUF724 domain-containing protein 7", "refseq_ac": "NP_191789", "refseq_name": "agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7)", "gene_name": "DUF7", "gene_names_uniprotkb": "DUF7; AIP1; ATDUF7; T17J13.260", "gene_names_refseq": "ATDUF7; DOMAIN OF UNKNOWN FUNCTION 724 7; DUF7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0V4", "url": "https://www.uniprot.org/uniprotkb/Q8H0V4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MLLT", "down_seq": "GRKEKLSVSKGSEIEISSQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V4" } ], "site_lbl": "Thr5" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8H0V4-1.4.4", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8H1G5-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "Q8H1G5-1", "length": 404, "uniprot_id": "REIL1_ARATH", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "refseq_ac": "NP_567875", "refseq_name": "Zinc finger protein 622", "gene_name": "REIL1", "gene_names_uniprotkb": "REIL1; F3L17.9; REI1-LIKE 1", "gene_names_refseq": "F3L17.9; REI1-LIKE 1; REIL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G5", "url": "https://www.uniprot.org/uniprotkb/Q8H1G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGEEDIAIIRQLPRRVQHRG", "down_seq": "IDDDSEDEWVEVDSDEELAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser123" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q8H1G5-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8H1G5-1.137.137", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G5-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "Q8H1G5-1", "length": 404, "uniprot_id": "REIL1_ARATH", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "refseq_ac": "NP_567875", "refseq_name": "Zinc finger protein 622", "gene_name": "REIL1", "gene_names_uniprotkb": "REIL1; F3L17.9; REI1-LIKE 1", "gene_names_refseq": "F3L17.9; REI1-LIKE 1; REIL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G5", "url": "https://www.uniprot.org/uniprotkb/Q8H1G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IAIIRQLPRRVQHRGSIDDD", "down_seq": "EDEWVEVDSDEELAAEEASD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser128" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8H1G5-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8H1G5-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8H1G5-1.147.147", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G5-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q8H1G5-1", "length": 404, "uniprot_id": "REIL1_ARATH", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "refseq_ac": "NP_567875", "refseq_name": "Zinc finger protein 622", "gene_name": "REIL1", "gene_names_uniprotkb": "REIL1; F3L17.9; REI1-LIKE 1", "gene_names_refseq": "F3L17.9; REI1-LIKE 1; REIL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G5", "url": "https://www.uniprot.org/uniprotkb/Q8H1G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RVQHRGSIDDDSEDEWVEVD", "down_seq": "DEELAAEEASDSLSKLNVNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8H1G5-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8H1G5-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8H1G5-1.147.147", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G5-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "Q8H1G5-1", "length": 404, "uniprot_id": "REIL1_ARATH", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "refseq_ac": "NP_567875", "refseq_name": "Zinc finger protein 622", "gene_name": "REIL1", "gene_names_uniprotkb": "REIL1; F3L17.9; REI1-LIKE 1", "gene_names_refseq": "F3L17.9; REI1-LIKE 1; REIL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G5", "url": "https://www.uniprot.org/uniprotkb/Q8H1G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSEDEWVEVDSDEELAAEEA", "down_seq": "DSLSKLNVNESGSAEDMDDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser147" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8H1G5-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q8H1G5-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8H1G5-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8H1G5-1.160.160", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G5-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "Q8H1G5-1", "length": 404, "uniprot_id": "REIL1_ARATH", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "refseq_ac": "NP_567875", "refseq_name": "Zinc finger protein 622", "gene_name": "REIL1", "gene_names_uniprotkb": "REIL1; F3L17.9; REI1-LIKE 1", "gene_names_refseq": "F3L17.9; REI1-LIKE 1; REIL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G5", "url": "https://www.uniprot.org/uniprotkb/Q8H1G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEELAAEEASDSLSKLNVNE", "down_seq": "GSAEDMDDDGDADKYELDPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q8H1G5-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8H1G5-1.160.160", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G5-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q8H1G5-1", "length": 404, "uniprot_id": "REIL1_ARATH", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "refseq_ac": "NP_567875", "refseq_name": "Zinc finger protein 622", "gene_name": "REIL1", "gene_names_uniprotkb": "REIL1; F3L17.9; REI1-LIKE 1", "gene_names_refseq": "F3L17.9; REI1-LIKE 1; REIL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G5", "url": "https://www.uniprot.org/uniprotkb/Q8H1G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JS04", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JS04" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "F4JS04", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JS04", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELAAEEASDSLSKLNVNESG", "down_seq": "AEDMDDDGDADKYELDPTCC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JS04", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JS04" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser160" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8H1G5-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8H1G5-1.158.158", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G5-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "Q8H1G5-1", "length": 404, "uniprot_id": "REIL1_ARATH", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "refseq_ac": "NP_567875", "refseq_name": "Zinc finger protein 622", "gene_name": "REIL1", "gene_names_uniprotkb": "REIL1; F3L17.9; REI1-LIKE 1", "gene_names_refseq": "F3L17.9; REI1-LIKE 1; REIL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G5", "url": "https://www.uniprot.org/uniprotkb/Q8H1G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HHGFFIPDIEYLKDPEGLLT", "down_seq": "LGLKVKRDFMCLYCNELCRP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "site_lbl": "Tyr220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8H1G5-1.392.392", "start_pos": 392, "end_pos": 392, "uniprot_canonical_ac": "Q8H1G5-1", "length": 404, "uniprot_id": "REIL1_ARATH", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1", "refseq_ac": "NP_567875", "refseq_name": "Zinc finger protein 622", "gene_name": "REIL1", "gene_names_uniprotkb": "REIL1; F3L17.9; REI1-LIKE 1", "gene_names_refseq": "F3L17.9; REI1-LIKE 1; REIL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G5", "url": "https://www.uniprot.org/uniprotkb/Q8H1G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVRKEMSKRGETMRTKIGVK", "down_seq": "NVIRNLPNNVPY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser392" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7DLS1-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "Q7DLS1-1", "length": 274, "uniprot_id": "PSB7B_ARATH", "protein_name": "Proteasome subunit beta type-7-B", "refseq_ac": "NP_198874", "refseq_name": "20S proteasome beta subunit PBB2", "gene_name": "PBB2", "gene_names_uniprotkb": "PBB2; MNF13.100; MNF13.10; MNF13_100; PRCFC", "gene_names_refseq": "20S PROTEASOME BETA SUBUNIT PBB2; 20S proteasome beta subunit PBB2; MNF13.100; MNF13_100; PBB2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7DLS1", "url": "https://www.uniprot.org/uniprotkb/Q7DLS1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q7DLS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7DLS1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q7DLS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7DLS1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EYLRNYMEPNPRTYVSSKGY", "down_seq": "FTKKTEVLLTKITPLLERVE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7DLS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7DLS1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PP65-1.209.209", "start_pos": 209, "end_pos": 209, "uniprot_canonical_ac": "Q5PP65-1", "length": 252, "uniprot_id": "C3H28_ARATH", "protein_name": "Zinc finger CCCH domain-containing protein 28", "refseq_ac": "NP_181086", "refseq_name": "Zinc finger C-x8-C-x5-C-x3-H type family protein", "gene_name": "T32F12.19", "gene_names_uniprotkb": "T32F12.19", "gene_names_refseq": "T32F12.19; T32F12_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP65", "url": "https://www.uniprot.org/uniprotkb/Q5PP65" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSATLDTKQRGQVDTVTSLV", "down_seq": "PGVSSQRTSSAVTQKPNGVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser209" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "209", "end_pos": "209" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PP65-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "Q5PP65-1", "length": 252, "uniprot_id": "C3H28_ARATH", "protein_name": "Zinc finger CCCH domain-containing protein 28", "refseq_ac": "NP_181086", "refseq_name": "Zinc finger C-x8-C-x5-C-x3-H type family protein", "gene_name": "T32F12.19", "gene_names_uniprotkb": "T32F12.19", "gene_names_refseq": "T32F12.19; T32F12_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP65", "url": "https://www.uniprot.org/uniprotkb/Q5PP65" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VWATEDDYSRVWAINSDGAE", "down_seq": "PSKKTRSSSSSEIGKSFFKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "209", "end_pos": "209" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q5PP65-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PP65-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "Q5PP65-1", "length": 252, "uniprot_id": "C3H28_ARATH", "protein_name": "Zinc finger CCCH domain-containing protein 28", "refseq_ac": "NP_181086", "refseq_name": "Zinc finger C-x8-C-x5-C-x3-H type family protein", "gene_name": "T32F12.19", "gene_names_uniprotkb": "T32F12.19", "gene_names_refseq": "T32F12.19; T32F12_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5PP65", "url": "https://www.uniprot.org/uniprotkb/Q5PP65" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATEDDYSRVWAINSDGAESP", "down_seq": "KKTRSSSSSEIGKSFFKTKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q5PP65", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PP65" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "209", "end_pos": "209" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q5PP65-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NL24-1.263.263", "start_pos": 263, "end_pos": 263, "uniprot_canonical_ac": "Q6NL24-1", "length": 265, "uniprot_id": "ECH1P_ARATH", "protein_name": "Probable enoyl-CoA hydratase 1, peroxisomal", "refseq_ac": "NP_193356", "refseq_name": "enoyl-CoA hydratase/isomerase A", "gene_name": "ECHIA", "gene_names_uniprotkb": "ECHIA; dl4145c", "gene_names_refseq": "DL4145C; E-COAH-2; ECHIA; ENOYL-COA HYDRATASE 2; FCAALL.314; enoyl-CoA hydratase/isomerase A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NL24", "url": "https://www.uniprot.org/uniprotkb/Q6NL24" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6NL24", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NL24" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q6NL24", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NL24", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEQFRKMQEFIAGRGSKKPS", "down_seq": "KL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NL24", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NL24" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser263" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "263", "end_pos": "263" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NPN9-1.293.293", "start_pos": 293, "end_pos": 293, "uniprot_canonical_ac": "Q6NPN9-1", "length": 350, "uniprot_id": "DWA2_ARATH", "protein_name": "WD repeat-containing protein DWA2", "refseq_ac": "NP_177753", "refseq_name": "DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2", "gene_name": "DWA2", "gene_names_uniprotkb": "DWA2; F15M4.24; T23E18.19", "gene_names_refseq": "DWA2; DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2; T23E18.19; T23E18_19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NPN9", "url": "https://www.uniprot.org/uniprotkb/Q6NPN9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6NPN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NPN9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6NPN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NPN9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TDSAVNLWFASASSEHKTSE", "down_seq": "PVEASRQRVNPLLNSYTDYE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NPN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NPN9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser293" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "293", "end_pos": "293" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NQ51-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GGLNQMRSAICDMVTVARLL", "down_seq": "LTLVVPELDKTSFWADPSGF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn121", "evidence": [ { "id": "Q6NQ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ51-1.207.207", "start_pos": 207, "end_pos": 207, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EKYYLKQVLPLFSKHKVVHF", "down_seq": "RTDTRLANNGLPLSLQWLRC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn207", "evidence": [ { "id": "Q6NQ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ51-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FPRIVKKEMLLESAELQQFQ", "down_seq": "HSSQMAALDFMVSVASNTFI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn375", "evidence": [ { "id": "Q6NQ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ51-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YKKTILLDRKRLVELLDLHH", "down_seq": "KTLTWDQFAVAVKEAHERRA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn435", "evidence": [ { "id": "Q6NQ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ51-1.496.496", "start_pos": 496, "end_pos": 496, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ANPQECLCEGTNCHDLFGHR", "down_seq": "LTH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn496", "evidence": [ { "id": "Q6NQ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ51-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SRFSAPVEPVPLPPPLPPPR", "down_seq": "YTSNGILLVSCNGGLNQMRS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn88", "evidence": [ { "id": "Q6NQ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ51-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MEVRSESNI", "down_seq": "QARSDKLPLPPAVPKPRVQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr10" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q6NQ51-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q6NQ51-1.7.7", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NQ51-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEVR", "down_seq": "ESNITQARSDKLPLPPAVPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q6NQ51-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6NQ51-1.10.10", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NQ51-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "Q6NQ51-1", "length": 499, "uniprot_id": "RRT4_ARATH", "protein_name": "Rhamnogalacturonan I rhamnosyltransferase 1", "refseq_ac": "NP_172855", "refseq_name": "O-fucosyltransferase family protein", "gene_name": "RRT4", "gene_names_uniprotkb": "RRT4; F16A14.24; F7A19.11; OFUT3", "gene_names_refseq": "F7A19.11; F7A19_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ51", "url": "https://www.uniprot.org/uniprotkb/Q6NQ51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEVRSE", "down_seq": "NITQARSDKLPLPPAVPKPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ51" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser7" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q6NQ51-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6NQ51-1.10.10", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6NQ87-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSDCFNCIKGAAGWLIQDCV", "down_seq": "QTDAYYWALDPTLCLVRYSN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q6NQ87-1.125.125", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NQTDAYYWALDPTLCLVRYS", "down_seq": "ISFSGSAAFWEIEPQYLVLN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn125", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q6NQ87-1.105.105", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ASAARSTPSSSDNHYRVDFA", "down_seq": "LTKFQNIYALMQCTPDISSD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn191", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SDECNNCLQRGVLEYQSCCG", "down_seq": "NTGGYVMRPICFFRWQLFTF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn230", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VMRPICFFRWQLFTFSKAFH", "down_seq": "ITLATPPKPPMNVPRPPSVG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn256", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.280.280", "start_pos": 280, "end_pos": 280, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ATPPKPPMNVPRPPSVGHGA", "down_seq": "TTDNDSRGVSAGIVVVITVP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn280", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q6NQ87-1.284.284", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KPPMNVPRPPSVGHGANTTD", "down_seq": "DSRGVSAGIVVVITVPAVVI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn284", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6NQ87-1.280.280", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FGVASVSAQTCIENRKYFTP", "down_seq": "GTYDSNRRLILSSLPNNTAS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn37", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q6NQ87-1.53.53", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YFTPNGTYDSNRRLILSSLP", "down_seq": "NTASQDGFYYGSIGEEQDRV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn53", "evidence": [ { "id": "Q6NQ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q6NQ87-1.37.37", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRNLARLLGFCLQGDGKFLI", "down_seq": "EFVLNKSLDYFLFDPEKQGE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "site_lbl": "Tyr426" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.482.482", "start_pos": 482, "end_pos": 482, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GILHLHQDPQLTIIYRDFKA", "down_seq": "NILLDADMNPKISDFGMATV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "site_lbl": "Ser482" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.518.518", "start_pos": 518, "end_pos": 518, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GMATVFGMEESRGNTNWIAE", "down_seq": "FVYMSPEYAVHGKFSMKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "site_lbl": "Thr518" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q6NQ87-1.526.526", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.526.526", "start_pos": 526, "end_pos": 526, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EESRGNTNWIAETFVYMSPE", "down_seq": "AVHGKFSMKSDVYSFGILIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "site_lbl": "Tyr526" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q6NQ87-1.518.518", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6NQ87-1.659.659", "start_pos": 659, "end_pos": 659, "uniprot_canonical_ac": "Q6NQ87-1", "length": 660, "uniprot_id": "CRK22_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 22", "refseq_ac": "NP_194061", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "gene_name": "CRK22", "gene_names_uniprotkb": "CRK22; F21P8.190", "gene_names_refseq": "CRK22; F21P8.190; F21P8_190; cysteine-rich RLK (RECEPTOR-like protein kinase) 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6NQ87", "url": "https://www.uniprot.org/uniprotkb/Q6NQ87" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ87", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ87" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q6NQ87", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ87", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IPGFFPQSRRELDPLSEGLE", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6NQ87", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6NQ87" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser659" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "659", "end_pos": "659" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6R2K2-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "Q6R2K2-1", "length": 687, "uniprot_id": "SRF4_ARATH", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 4", "refseq_ac": "NP_566444", "refseq_name": "STRUBBELIG-receptor family 4", "gene_name": "SRF4", "gene_names_uniprotkb": "SRF4; MGH6.19", "gene_names_refseq": "MGH6.19; SRF4; STRUBBELIG-receptor family 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R2K2", "url": "https://www.uniprot.org/uniprotkb/Q6R2K2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6R2K2", "url": "https://www.uniprot.org/uniprotkb/Q6R2K2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LETIDLSSNQLTGKLPQSFA", "down_seq": "LTGLKTLHLQENQFKGSINA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn187", "evidence": [ { "id": "Q6R2K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6R2K2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "263", "end_pos": "263" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6R2K2-1.263.263", "start_pos": 263, "end_pos": 263, "uniprot_canonical_ac": "Q6R2K2-1", "length": 687, "uniprot_id": "SRF4_ARATH", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 4", "refseq_ac": "NP_566444", "refseq_name": "STRUBBELIG-receptor family 4", "gene_name": "SRF4", "gene_names_uniprotkb": "SRF4; MGH6.19", "gene_names_refseq": "MGH6.19; SRF4; STRUBBELIG-receptor family 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R2K2", "url": "https://www.uniprot.org/uniprotkb/Q6R2K2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6R2K2", "url": "https://www.uniprot.org/uniprotkb/Q6R2K2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NKWSSGRAPSPPPGTRHIDR", "down_seq": "SSGGGGGSSKALTLGVIIAV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn263", "evidence": [ { "id": "Q6R2K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6R2K2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "263", "end_pos": "263" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6R3K9-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "Q6R3K9-1", "length": 664, "uniprot_id": "YSL2_ARATH", "protein_name": "Metal-nicotianamine transporter YSL2", "refseq_ac": "NP_197826", "refseq_name": "YELLOW STRIPE like 2", "gene_name": "YSL2", "gene_names_uniprotkb": "YSL2; K16H17.9", "gene_names_refseq": "ATYSL2; K16H17.9; K16H17_9; YELLOW STRIPE LIKE 2; YELLOW STRIPE like 2; YSL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R3K9", "url": "https://www.uniprot.org/uniprotkb/Q6R3K9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "Q6R3K9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3K9" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] } ], "crossref": [ { "id": "Q6R3K9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3K9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YNFVKILFFTGRSFHSRLSK", "down_seq": "NSISTLVEVPEDSTKESDNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R3K9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3K9" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ], "site_lbl": "Thr346" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "346", "end_pos": "346" }, { "start_pos": "348", "end_pos": "348" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q6R3K9-1.348.348", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6R3K9-1.348.348", "start_pos": 348, "end_pos": 348, "uniprot_canonical_ac": "Q6R3K9-1", "length": 664, "uniprot_id": "YSL2_ARATH", "protein_name": "Metal-nicotianamine transporter YSL2", "refseq_ac": "NP_197826", "refseq_name": "YELLOW STRIPE like 2", "gene_name": "YSL2", "gene_names_uniprotkb": "YSL2; K16H17.9", "gene_names_refseq": "ATYSL2; K16H17.9; K16H17_9; YELLOW STRIPE LIKE 2; YELLOW STRIPE like 2; YSL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R3K9", "url": "https://www.uniprot.org/uniprotkb/Q6R3K9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q6R3K9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3K9" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q6R3K9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3K9" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q6R3K9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3K9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FVKILFFTGRSFHSRLSKTN", "down_seq": "ISTLVEVPEDSTKESDNLKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R3K9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3K9" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser348" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "346", "end_pos": "346" }, { "start_pos": "348", "end_pos": "348" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q6R3K9-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6R3L0-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "Q6R3L0-1", "length": 673, "uniprot_id": "YSL1_ARATH", "protein_name": "Metal-nicotianamine transporter YSL1", "refseq_ac": "NP_567694", "refseq_name": "YELLOW STRIPE like 1", "gene_name": "YSL1", "gene_names_uniprotkb": "YSL1; T19F6.110; T19F6.8", "gene_names_refseq": "ATYSL1; T19F6.110; T19F6_110; YELLOW STRIPE LIKE 1; YELLOW STRIPE like 1; YSL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R3L0", "url": "https://www.uniprot.org/uniprotkb/Q6R3L0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q6R3L0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3L0" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q6R3L0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3L0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "REGEEEEDNNQLSLQEEEPD", "down_seq": "EEEMSGRTIEPWTKQITVRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R3L0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R3L0" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Thr31" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "31", "end_pos": "31" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6R8G7-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "Q6R8G7-1", "length": 813, "uniprot_id": "PHO13_ARATH", "protein_name": "Phosphate transporter PHO1 homolog 3", "refseq_ac": "NP_172857", "refseq_name": "EXS (ERD1/XPR1/SYG1) family protein", "gene_name": "H3; PHO1", "gene_names_uniprotkb": "H3; PHO1; F16A14.26; F7A19.13", "gene_names_refseq": "F7A19.13; F7A19_13; H3; PHO1 homolog 3; PHO1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R8G7", "url": "https://www.uniprot.org/uniprotkb/Q6R8G7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VENPDGWRWEERTVEMTRLA", "down_seq": "DIATSAAALSASTPAGAKSM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser188" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6R8G7-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "Q6R8G7-1", "length": 813, "uniprot_id": "PHO13_ARATH", "protein_name": "Phosphate transporter PHO1 homolog 3", "refseq_ac": "NP_172857", "refseq_name": "EXS (ERD1/XPR1/SYG1) family protein", "gene_name": "H3; PHO1", "gene_names_uniprotkb": "H3; PHO1; F16A14.26; F7A19.13", "gene_names_refseq": "F7A19.13; F7A19_13; H3; PHO1 homolog 3; PHO1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R8G7", "url": "https://www.uniprot.org/uniprotkb/Q6R8G7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSAAALSASTPAGAKSMKVR", "down_seq": "QEHMEAIQEGGSSRAGLMED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser212" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6R8G7-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q6R8G7-1", "length": 813, "uniprot_id": "PHO13_ARATH", "protein_name": "Phosphate transporter PHO1 homolog 3", "refseq_ac": "NP_172857", "refseq_name": "EXS (ERD1/XPR1/SYG1) family protein", "gene_name": "H3; PHO1", "gene_names_uniprotkb": "H3; PHO1; F16A14.26; F7A19.13", "gene_names_refseq": "F7A19.13; F7A19_13; H3; PHO1 homolog 3; PHO1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R8G7", "url": "https://www.uniprot.org/uniprotkb/Q6R8G7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HGGAKTGGGLNRKLTLYRAF", "down_seq": "GLVSTPRHKRSNSSHDVEEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q6R8G7-1.70.70", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6R8G7-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "Q6R8G7-1", "length": 813, "uniprot_id": "PHO13_ARATH", "protein_name": "Phosphate transporter PHO1 homolog 3", "refseq_ac": "NP_172857", "refseq_name": "EXS (ERD1/XPR1/SYG1) family protein", "gene_name": "H3; PHO1", "gene_names_uniprotkb": "H3; PHO1; F16A14.26; F7A19.13", "gene_names_refseq": "F7A19.13; F7A19_13; H3; PHO1 homolog 3; PHO1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R8G7", "url": "https://www.uniprot.org/uniprotkb/Q6R8G7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TGGGLNRKLTLYRAFSGLVS", "down_seq": "PRHKRSNSSHDVEEGVQLTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R8G7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R8G7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr70" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q6R8G7-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6X5V0-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "Q6X5V0-1", "length": 51, "uniprot_id": "DVL1_ARATH", "protein_name": "Small polypeptide DEVIL 1", "refseq_ac": "NP_001318571", "refseq_name": "ROTUNDIFOLIA like 18", "gene_name": "DVL1", "gene_names_uniprotkb": "DVL1; F1N13; RTFL18", "gene_names_refseq": "DEVIL 1; DVL1; ROTUNDIFOLIA like 18; RTFL18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "DVL, a novel class of small polypeptides: overexpression alters Arabidopsis development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-03", "authors": "Wen Jiangqi, Lease Kevin A, Walker John C", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "reference": [ { "type": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "crossref": [ { "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "MKRVMMSSAERSKEKKRSIS", "down_seq": "RLGKYMKEQKGRIYIIRRCM", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "E", "comment": "Impaired developmental regulatory activity.", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" }, { "database": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q6X5V0-1.37.37", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q6X5V0-1.38.38", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q6X5V0-1.42.42", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6X5V0-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "Q6X5V0-1", "length": 51, "uniprot_id": "DVL1_ARATH", "protein_name": "Small polypeptide DEVIL 1", "refseq_ac": "NP_001318571", "refseq_name": "ROTUNDIFOLIA like 18", "gene_name": "DVL1", "gene_names_uniprotkb": "DVL1; F1N13; RTFL18", "gene_names_refseq": "DEVIL 1; DVL1; ROTUNDIFOLIA like 18; RTFL18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "DVL, a novel class of small polypeptides: overexpression alters Arabidopsis development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-03", "authors": "Wen Jiangqi, Lease Kevin A, Walker John C", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "reference": [ { "type": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "crossref": [ { "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KKRSISRRLGKYMKEQKGRI", "down_seq": "IIRRCMVMLLCSHD", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "N", "comment": "Impaired developmental regulatory activity.", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" }, { "database": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q6X5V0-1.23.23", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6X5V0-1.38.38", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6X5V0-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q6X5V0-1.46.46", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6X5V0-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "Q6X5V0-1", "length": 51, "uniprot_id": "DVL1_ARATH", "protein_name": "Small polypeptide DEVIL 1", "refseq_ac": "NP_001318571", "refseq_name": "ROTUNDIFOLIA like 18", "gene_name": "DVL1", "gene_names_uniprotkb": "DVL1; F1N13; RTFL18", "gene_names_refseq": "DEVIL 1; DVL1; ROTUNDIFOLIA like 18; RTFL18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "DVL, a novel class of small polypeptides: overexpression alters Arabidopsis development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-03", "authors": "Wen Jiangqi, Lease Kevin A, Walker John C", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "reference": [ { "type": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "crossref": [ { "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "KRSISRRLGKYMKEQKGRIY", "down_seq": "IRRCMVMLLCSHD", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "S", "comment": "Impaired developmental regulatory activity.", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" }, { "database": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q6X5V0-1.23.23", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6X5V0-1.37.37", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6X5V0-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6X5V0-1.46.46", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6X5V0-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q6X5V0-1", "length": 51, "uniprot_id": "DVL1_ARATH", "protein_name": "Small polypeptide DEVIL 1", "refseq_ac": "NP_001318571", "refseq_name": "ROTUNDIFOLIA like 18", "gene_name": "DVL1", "gene_names_uniprotkb": "DVL1; F1N13; RTFL18", "gene_names_refseq": "DEVIL 1; DVL1; ROTUNDIFOLIA like 18; RTFL18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "DVL, a novel class of small polypeptides: overexpression alters Arabidopsis development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-03", "authors": "Wen Jiangqi, Lease Kevin A, Walker John C", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "reference": [ { "type": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "crossref": [ { "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "SRRLGKYMKEQKGRIYIIRR", "down_seq": "MVMLLCSHD", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Impaired developmental regulatory activity.", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" }, { "database": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q6X5V0-1.23.23", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q6X5V0-1.37.37", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q6X5V0-1.38.38", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6X5V0-1.46.46", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6X5V0-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q6X5V0-1", "length": 51, "uniprot_id": "DVL1_ARATH", "protein_name": "Small polypeptide DEVIL 1", "refseq_ac": "NP_001318571", "refseq_name": "ROTUNDIFOLIA like 18", "gene_name": "DVL1", "gene_names_uniprotkb": "DVL1; F1N13; RTFL18", "gene_names_refseq": "DEVIL 1; DVL1; ROTUNDIFOLIA like 18; RTFL18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "DVL, a novel class of small polypeptides: overexpression alters Arabidopsis development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-03", "authors": "Wen Jiangqi, Lease Kevin A, Walker John C", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" } ], "reference": [ { "type": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "crossref": [ { "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "GKYMKEQKGRIYIIRRCMVM", "down_seq": "LCSHD", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "H", "comment": "Impaired developmental regulatory activity.", "evidence": [ { "database": "UniProtKB", "id": "Q6X5V0", "url": "https://www.uniprot.org/uniprotkb/Q6X5V0" }, { "database": "PubMed", "id": "14871303", "url": "https://glygen.org/publication/PubMed/14871303" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q6X5V0-1.37.37", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q6X5V0-1.38.38", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q6X5V0-1.42.42", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q700W2-1.317.317", "start_pos": 317, "end_pos": 317, "uniprot_canonical_ac": "Q700W2-1", "length": 375, "uniprot_id": "SPL9_ARATH", "protein_name": "Squamosa promoter-binding-like protein 9", "refseq_ac": "NP_181749", "refseq_name": "squamosa promoter binding protein-like 9", "gene_name": "SPL9", "gene_names_uniprotkb": "SPL9; T24P15.11", "gene_names_refseq": "AtSPL9; SPL9; T24P15.11; T24P15_11; squamosa promoter binding protein-like 9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q700W2", "url": "https://www.uniprot.org/uniprotkb/Q700W2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q700W2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700W2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q700W2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700W2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSQHQYLNPPWVFKDNDNDM", "down_seq": "PVLNLGRYTEPDNCQISSGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q700W2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700W2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser317" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" }, { "start_pos": "374", "end_pos": "374" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q700W2-1.374.374", "start_pos": 374, "end_pos": 374, "uniprot_canonical_ac": "Q700W2-1", "length": 375, "uniprot_id": "SPL9_ARATH", "protein_name": "Squamosa promoter-binding-like protein 9", "refseq_ac": "NP_181749", "refseq_name": "squamosa promoter binding protein-like 9", "gene_name": "SPL9", "gene_names_uniprotkb": "SPL9; T24P15.11", "gene_names_refseq": "AtSPL9; SPL9; T24P15.11; T24P15_11; squamosa promoter binding protein-like 9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q700W2", "url": "https://www.uniprot.org/uniprotkb/Q700W2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q700W2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700W2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q700W2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700W2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QYMEDENTRAYDSSSHHTNW", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q700W2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700W2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser374" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" }, { "start_pos": "374", "end_pos": "374" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7EB72-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "Q7EB72-1", "length": 183, "uniprot_id": "LTG15_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 15", "refseq_ac": "NP_001318446", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG15", "gene_names_uniprotkb": "LTPG15; F11L15.3; XYLP11; XYP7", "gene_names_refseq": "F11L15.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7EB72", "url": "https://www.uniprot.org/uniprotkb/Q7EB72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PNACNIQTPPLTQCNAATGP", "down_seq": "AQPPAPSPTEKTPDVTLTPT", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr114", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7EB72-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q7EB72-1", "length": 183, "uniprot_id": "LTG15_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 15", "refseq_ac": "NP_001318446", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG15", "gene_names_uniprotkb": "LTPG15; F11L15.3; XYLP11; XYP7", "gene_names_refseq": "F11L15.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7EB72", "url": "https://www.uniprot.org/uniprotkb/Q7EB72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7EB72", "url": "https://www.uniprot.org/uniprotkb/Q7EB72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSSCVSTLTTLSPCLSYITG", "down_seq": "STTPSQPCCSRLDSVIKSSP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn47", "evidence": [ { "id": "Q7EB72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7EB72#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7EB72-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "Q7EB72-1", "length": 183, "uniprot_id": "LTG15_ARATH", "protein_name": "Non-specific lipid transfer protein GPI-anchored 15", "refseq_ac": "NP_001318446", "refseq_name": "Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein", "gene_name": "LTPG15", "gene_names_uniprotkb": "LTPG15; F11L15.3; XYLP11; XYP7", "gene_names_refseq": "F11L15.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7EB72", "url": "https://www.uniprot.org/uniprotkb/Q7EB72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7EB72", "url": "https://www.uniprot.org/uniprotkb/Q7EB72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SPQCICSAVNSPIPNIGLNI", "down_seq": "RTQALQLPNACNIQTPPLTQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn86", "evidence": [ { "id": "Q7EB72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7EB72#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LKSLNLSFNYFAGEFPTVLY", "down_seq": "CTKLQYLDLSQNLFNGSLPD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn109", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q7FZR1-1.93.93", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q7FZR1-1.124.124", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.124.124", "start_pos": 124, "end_pos": 124, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PTVLYNCTKLQYLDLSQNLF", "down_seq": "GSLPDDINRLAPKLKYLDLA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn124", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q7FZR1-1.109.109", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KYMWLEEMNLIGEISAVVFE", "down_seq": "MTDLKHVDLSVNNLTGRIPD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn233", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q7FZR1-1.246.246", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ISAVVFENMTDLKHVDLSVN", "down_seq": "LTGRIPDVLFGLKNLTELYL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn246", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q7FZR1-1.233.233", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q7FZR1-1.260.260", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.260.260", "start_pos": 260, "end_pos": 260, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VDLSVNNLTGRIPDVLFGLK", "down_seq": "LTELYLFANDLTGEIPKSIS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn260", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q7FZR1-1.246.246", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IPKSISAKNLVHLDLSANNL", "down_seq": "GSIPESIGNLTNLELLYLFV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn295", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q7FZR1-1.304.304", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.304.304", "start_pos": 304, "end_pos": 304, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LVHLDLSANNLNGSIPESIG", "down_seq": "LTNLELLYLFVNELTGEIPR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn304", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q7FZR1-1.295.295", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.389.389", "start_pos": 389, "end_pos": 389, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KLPENLCHGGKLQSVIVYSN", "down_seq": "LTGEIPESLGDCETLSSVLL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn389", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.422.422", "start_pos": 422, "end_pos": 422, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ETLSSVLLQNNGFSGSVTIS", "down_seq": "NTRSNNNFTGKIPSFICELH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn422", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q7FZR1-1.429.429", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.429.429", "start_pos": 429, "end_pos": 429, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LQNNGFSGSVTISNNTRSNN", "down_seq": "FTGKIPSFICELHSLILLDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn429", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q7FZR1-1.422.422", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.455.455", "start_pos": 455, "end_pos": 455, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSFICELHSLILLDLSTNKF", "down_seq": "GSIPRCIANLSTLEVLNLGK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn455", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q7FZR1-1.464.464", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.464.464", "start_pos": 464, "end_pos": 464, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LILLDLSTNKFNGSIPRCIA", "down_seq": "LSTLEVLNLGKNHLSGSIPE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn464", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q7FZR1-1.455.455", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RSTLLNLKRDLGDPLSLRLW", "down_seq": "DTSSPCNWPRITCTAGNVTE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn47", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q7FZR1-1.64.64", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.485.485", "start_pos": 485, "end_pos": 485, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSTLEVLNLGKNHLSGSIPE", "down_seq": "ISTSVKSIDIGHNQLAGKLP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn485", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.525.525", "start_pos": 525, "end_pos": 525, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PRSLVRISSLEVLNVESNKI", "down_seq": "DTFPFWLDSMQQLQVLVLRS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn525", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.571.571", "start_pos": 571, "end_pos": 571, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SINQNGFSKLRIIDISGNHF", "down_seq": "GTLPLDFFVNWTAMFSLGKI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn571", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q7FZR1-1.581.581", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.581.581", "start_pos": 581, "end_pos": 581, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RIIDISGNHFNGTLPLDFFV", "down_seq": "WTAMFSLGKIEDQYMGTNYM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn581", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q7FZR1-1.571.571", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q7FZR1-1.595.595", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q7FZR1-1.598.598", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q7FZR1-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RLWNDTSSPCNWPRITCTAG", "down_seq": "VTEINFQNQNFTGTVPTTIC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn64", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q7FZR1-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q7FZR1-1.74.74", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.656.656", "start_pos": 656, "end_pos": 656, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NKFEGEIPRSVGLLKELHVL", "down_seq": "LSNNGFTGHIPSSMGNLIEL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn656", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.704.704", "start_pos": 704, "end_pos": 704, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NKLSGEIPPELGKLSYLAYM", "down_seq": "FSQNQFVGLVPGGTQFQTQP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn704", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NWPRITCTAGNVTEINFQNQ", "down_seq": "FTGTVPTTICNFPNLKSLNL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q7FZR1-1.64.64", "categories": [ "glycosylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q7FZR1-1.93.93", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QNFTGTVPTTICNFPNLKSL", "down_seq": "LSFNYFAGEFPTVLYNCTKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "Q7FZR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q7FZR1-1.74.74", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q7FZR1-1.109.109", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7FZR1-1.595.595", "start_pos": 595, "end_pos": 595, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PLDFFVNWTAMFSLGKIEDQ", "down_seq": "MGTNYMRTNYYSDSIVVMIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Tyr595" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q7FZR1-1.581.581", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q7FZR1-1.598.598", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q7FZR1-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7FZR1-1.598.598", "start_pos": 598, "end_pos": 598, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FFVNWTAMFSLGKIEDQYMG", "down_seq": "NYMRTNYYSDSIVVMIKGIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr598" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q7FZR1-1.581.581", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q7FZR1-1.595.595", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q7FZR1-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7FZR1-1.600.600", "start_pos": 600, "end_pos": 600, "uniprot_canonical_ac": "Q7FZR1-1", "length": 811, "uniprot_id": "RLP52_ARATH", "protein_name": "Receptor-like protein 52", "refseq_ac": "NP_197963", "refseq_name": "receptor like protein 52", "gene_name": "RLP52", "gene_names_uniprotkb": "RLP52; T1N24.21", "gene_names_refseq": "AtRLP52; RLP52; T1N24.21; T1N24_21; receptor like protein 52", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7FZR1", "url": "https://www.uniprot.org/uniprotkb/Q7FZR1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VNWTAMFSLGKIEDQYMGTN", "down_seq": "MRTNYYSDSIVVMIKGIALE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7FZR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7FZR1" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Tyr600" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "455", "end_pos": "455" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "704", "end_pos": "704" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "595", "end_pos": "595" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q7FZR1-1.581.581", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q7FZR1-1.595.595", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q7FZR1-1.598.598", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7X911-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "Q7X911-1", "length": 593, "uniprot_id": "SAC6_ARATH", "protein_name": "Phosphoinositide phosphatase SAC6", "refseq_ac": "NP_201403", "refseq_name": "Phosphoinositide phosphatase family protein", "gene_name": "SAC6", "gene_names_uniprotkb": "SAC6; IBS2; K2A18.9; SAC1B", "gene_names_refseq": "ATSAC1B; ATSAC6; IBS2; IMPAIRED IN BABA-INDUCED STERILITY 2; K2A18.9; K2A18_9; SAC DOMAIN-CONTAINING PROTEIN 6; SACIB; SUPPRESSOR OF ACTIN 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7X911", "url": "https://www.uniprot.org/uniprotkb/Q7X911" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKIHSGLRLWEFPDQYVIEP", "down_seq": "DGSSASCLDISRLDGSMKLI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr25", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q7X911-1.9.9", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7X911-1.401.401", "start_pos": 401, "end_pos": 401, "uniprot_canonical_ac": "Q7X911-1", "length": 593, "uniprot_id": "SAC6_ARATH", "protein_name": "Phosphoinositide phosphatase SAC6", "refseq_ac": "NP_201403", "refseq_name": "Phosphoinositide phosphatase family protein", "gene_name": "SAC6", "gene_names_uniprotkb": "SAC6; IBS2; K2A18.9; SAC1B", "gene_names_refseq": "ATSAC1B; ATSAC6; IBS2; IMPAIRED IN BABA-INDUCED STERILITY 2; K2A18.9; K2A18_9; SAC DOMAIN-CONTAINING PROTEIN 6; SACIB; SUPPRESSOR OF ACTIN 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7X911", "url": "https://www.uniprot.org/uniprotkb/Q7X911" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q7X911", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7X911" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q7X911", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7X911", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EKMKEQLGIVRTNCIDCLDR", "down_seq": "NVTQSMIGRKLLELQLKRIG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7X911", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7X911" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr401" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7X911-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "Q7X911-1", "length": 593, "uniprot_id": "SAC6_ARATH", "protein_name": "Phosphoinositide phosphatase SAC6", "refseq_ac": "NP_201403", "refseq_name": "Phosphoinositide phosphatase family protein", "gene_name": "SAC6", "gene_names_uniprotkb": "SAC6; IBS2; K2A18.9; SAC1B", "gene_names_refseq": "ATSAC1B; ATSAC6; IBS2; IMPAIRED IN BABA-INDUCED STERILITY 2; K2A18.9; K2A18_9; SAC DOMAIN-CONTAINING PROTEIN 6; SACIB; SUPPRESSOR OF ACTIN 1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7X911", "url": "https://www.uniprot.org/uniprotkb/Q7X911" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q7X911", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7X911" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q7X911", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7X911", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MVSRLKIH", "down_seq": "GLRLWEFPDQYVIEPTDGSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7X911", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7X911" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q7X911-1.25.25", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7XA83-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "Q7XA83-1", "length": 423, "uniprot_id": "IQD16_ARATH", "protein_name": "Protein IQ-DOMAIN 16", "refseq_ac": "NP_192802", "refseq_name": "IQ-domain 16", "gene_name": "IQD16", "gene_names_uniprotkb": "IQD16; F3H7.10; T4F9.100", "gene_names_refseq": "IQ-domain 16; IQD16; T4F9.100; T4F9_100", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XA83", "url": "https://www.uniprot.org/uniprotkb/Q7XA83" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DPIKTLEAVTTHHHQRSYPA", "down_seq": "PPSCRASRSVMVRSASPRIP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr316", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XA83-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q7XA83-1", "length": 423, "uniprot_id": "IQD16_ARATH", "protein_name": "Protein IQ-DOMAIN 16", "refseq_ac": "NP_192802", "refseq_name": "IQ-domain 16", "gene_name": "IQD16", "gene_names_uniprotkb": "IQD16; F3H7.10; T4F9.100", "gene_names_refseq": "IQ-domain 16; IQD16; T4F9.100; T4F9_100", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XA83", "url": "https://www.uniprot.org/uniprotkb/Q7XA83" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q7XA83", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XA83" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q7XA83", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XA83", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IAIKREKAQALALSNQIRSR", "down_seq": "SRNQSAGDDRELLERTQWLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7XA83", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XA83" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser256" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7XJE5-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q7XJE5-1", "length": 418, "uniprot_id": "MCA2_ARATH", "protein_name": "Metacaspase-2", "refseq_ac": "NP_001031711", "refseq_name": "metacaspase 2", "gene_name": "AMC2", "gene_names_uniprotkb": "AMC2; F13M23.250; MCP1C", "gene_names_refseq": "AtMC2; AtMCP1c; F24A6.7; MC2; MCP1c; metacaspase 1c; metacaspase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPFPFPNSSPAPSTFIYPPP", "down_seq": "PSPYTHAPHAPSPFNHAPPD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr67", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "67", "end_pos": "67" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJE5-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "Q7XJE5-1", "length": 418, "uniprot_id": "MCA2_ARATH", "protein_name": "Metacaspase-2", "refseq_ac": "NP_001031711", "refseq_name": "metacaspase 2", "gene_name": "AMC2", "gene_names_uniprotkb": "AMC2; F13M23.250; MCP1C", "gene_names_refseq": "AtMC2; AtMCP1c; F24A6.7; MC2; MCP1c; metacaspase 1c; metacaspase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis type I metacaspases control cell death.", "journal": "Science (New York, N.Y.)", "date": "2010-12-03", "authors": "Coll Nuria S, Vercammen Dominique, Smidler Andrea, Clover Charles, Van Breusegem Frank, Dangl Jeffery L, Epple Petra", "evidence": [ { "database": "UniProtKB", "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5" } ], "reference": [ { "type": "PubMed", "id": "21097903", "url": "https://glygen.org/publication/PubMed/21097903" } ] } ], "crossref": [ { "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21097903", "url": "https://glygen.org/publication/PubMed/21097903", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "QKRAVIVGVSYKNTKDELKG", "down_seq": "INDANCMKFMLMKRFQFPES", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on the cell death inhibitory function.", "evidence": [ { "database": "UniProtKB", "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5" }, { "database": "PubMed", "id": "21097903", "url": "https://glygen.org/publication/PubMed/21097903" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "67", "end_pos": "67" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7XJE5-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q7XJE5-1", "length": 418, "uniprot_id": "MCA2_ARATH", "protein_name": "Metacaspase-2", "refseq_ac": "NP_001031711", "refseq_name": "metacaspase 2", "gene_name": "AMC2", "gene_names_uniprotkb": "AMC2; F13M23.250; MCP1C", "gene_names_refseq": "AtMC2; AtMCP1c; F24A6.7; MC2; MCP1c; metacaspase 1c; metacaspase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis type I metacaspases control cell death.", "journal": "Science (New York, N.Y.)", "date": "2010-12-03", "authors": "Coll Nuria S, Vercammen Dominique, Smidler Andrea, Clover Charles, Van Breusegem Frank, Dangl Jeffery L, Epple Petra", "evidence": [ { "database": "UniProtKB", "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5" } ], "reference": [ { "type": "PubMed", "id": "21097903", "url": "https://glygen.org/publication/PubMed/21097903" } ] } ], "crossref": [ { "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21097903", "url": "https://glygen.org/publication/PubMed/21097903", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "NATIVRPLPYGVKLHAIVDA", "down_seq": "HSGTVMDLPYLCRMDRLGNY", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on the cell death inhibitory function.", "evidence": [ { "database": "UniProtKB", "id": "Q7XJE5", "url": "https://www.uniprot.org/uniprotkb/Q7XJE5" }, { "database": "PubMed", "id": "21097903", "url": "https://glygen.org/publication/PubMed/21097903" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "67", "end_pos": "67" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7XJK8-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "Q7XJK8-1", "length": 278, "uniprot_id": "PHE2_ARATH", "protein_name": "MADS-box transcription factor PHERES 2", "refseq_ac": "NP_176709", "refseq_name": "AGAMOUS-like 38", "gene_name": "PHE2", "gene_names_uniprotkb": "PHE2; AGL38; T8F5.8", "gene_names_refseq": "AGAMOUS-like 38; AGL38; PHE2; PHERES2; T8F5.8; T8F5_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJK8", "url": "https://www.uniprot.org/uniprotkb/Q7XJK8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q7XJK8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XJK8" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] } ], "crossref": [ { "id": "Q7XJK8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XJK8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "NHNSQIRELMFGCLKGETNV", "down_seq": "NLDGRDLQDLSLYIDKYLNG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7XJK8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XJK8" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ], "site_lbl": "Tyr127" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7XJL2-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "Q7XJL2-1", "length": 925, "uniprot_id": "GLR31_ARATH", "protein_name": "Glutamate receptor 3.1", "refseq_ac": "NP_001318239", "refseq_name": "glutamate receptor 2", "gene_name": "GLR3.1", "gene_names_uniprotkb": "GLR3.1; ACL1; F5J6.2; GLR2", "gene_names_refseq": "ATGLR2; ATGLR3.1; F5J6.2; F5J6_2; GLR2; GLR3.1; GLUTAMATE RECEPTOR 2; glutamate receptor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TPDSRKKRDFAARWKNKLSN", "down_seq": "KTIGLNVYGLYAYDTVWIIA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn309", "evidence": [ { "id": "Q7XJL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "309", "end_pos": "309" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "738", "end_pos": "738" }, { "start_pos": "812", "end_pos": "812" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJL2-1.341.341", "start_pos": 341, "end_pos": 341, "uniprot_canonical_ac": "Q7XJL2-1", "length": 925, "uniprot_id": "GLR31_ARATH", "protein_name": "Glutamate receptor 3.1", "refseq_ac": "NP_001318239", "refseq_name": "glutamate receptor 2", "gene_name": "GLR3.1", "gene_names_uniprotkb": "GLR3.1; ACL1; F5J6.2; GLR2", "gene_names_refseq": "ATGLR2; ATGLR3.1; F5J6.2; F5J6_2; GLR2; GLR3.1; GLUTAMATE RECEPTOR 2; glutamate receptor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AYDTVWIIARAVKTLLEAGG", "down_seq": "LSFSNDAKLGSLKGEALNLS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn341", "evidence": [ { "id": "Q7XJL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "309", "end_pos": "309" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "738", "end_pos": "738" }, { "start_pos": "812", "end_pos": "812" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q7XJL2-1.359.359", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJL2-1.359.359", "start_pos": 359, "end_pos": 359, "uniprot_canonical_ac": "Q7XJL2-1", "length": 925, "uniprot_id": "GLR31_ARATH", "protein_name": "Glutamate receptor 3.1", "refseq_ac": "NP_001318239", "refseq_name": "glutamate receptor 2", "gene_name": "GLR3.1", "gene_names_uniprotkb": "GLR3.1; ACL1; F5J6.2; GLR2", "gene_names_refseq": "ATGLR2; ATGLR3.1; F5J6.2; F5J6_2; GLR2; GLR3.1; GLUTAMATE RECEPTOR 2; glutamate receptor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GGNLSFSNDAKLGSLKGEAL", "down_seq": "LSALSRFDQGSQLLDYIVHT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn359", "evidence": [ { "id": "Q7XJL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "309", "end_pos": "309" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "738", "end_pos": "738" }, { "start_pos": "812", "end_pos": "812" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q7XJL2-1.341.341", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJL2-1.419.419", "start_pos": 419, "end_pos": 419, "uniprot_canonical_ac": "Q7XJL2-1", "length": 925, "uniprot_id": "GLR31_ARATH", "protein_name": "Glutamate receptor 3.1", "refseq_ac": "NP_001318239", "refseq_name": "glutamate receptor 2", "gene_name": "GLR3.1", "gene_names_uniprotkb": "GLR3.1; ACL1; F5J6.2; GLR2", "gene_names_refseq": "ATGLR2; ATGLR3.1; F5J6.2; F5J6_2; GLR2; GLR3.1; GLUTAMATE RECEPTOR 2; glutamate receptor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSYDIINLVDDRVHQIGYWS", "down_seq": "YSGLSIVPPESFYSKPPNRS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn419", "evidence": [ { "id": "Q7XJL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "309", "end_pos": "309" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "738", "end_pos": "738" }, { "start_pos": "812", "end_pos": "812" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q7XJL2-1.437.437", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJL2-1.437.437", "start_pos": 437, "end_pos": 437, "uniprot_canonical_ac": "Q7XJL2-1", "length": 925, "uniprot_id": "GLR31_ARATH", "protein_name": "Glutamate receptor 3.1", "refseq_ac": "NP_001318239", "refseq_name": "glutamate receptor 2", "gene_name": "GLR3.1", "gene_names_uniprotkb": "GLR3.1; ACL1; F5J6.2; GLR2", "gene_names_refseq": "ATGLR2; ATGLR3.1; F5J6.2; F5J6_2; GLR2; GLR3.1; GLUTAMATE RECEPTOR 2; glutamate receptor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WSNYSGLSIVPPESFYSKPP", "down_seq": "RSSSNQHLNSVTWPGGTSVT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn437", "evidence": [ { "id": "Q7XJL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "309", "end_pos": "309" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "738", "end_pos": "738" }, { "start_pos": "812", "end_pos": "812" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q7XJL2-1.419.419", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJL2-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "Q7XJL2-1", "length": 925, "uniprot_id": "GLR31_ARATH", "protein_name": "Glutamate receptor 3.1", "refseq_ac": "NP_001318239", "refseq_name": "glutamate receptor 2", "gene_name": "GLR3.1", "gene_names_uniprotkb": "GLR3.1; ACL1; F5J6.2; GLR2", "gene_names_refseq": "ATGLR2; ATGLR3.1; F5J6.2; F5J6_2; GLR2; GLR3.1; GLUTAMATE RECEPTOR 2; glutamate receptor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RRLRIGVPDRASFKDFVSRV", "down_seq": "GSSNKVQGYCIDVFEAAVKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn488", "evidence": [ { "id": "Q7XJL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "309", "end_pos": "309" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "738", "end_pos": "738" }, { "start_pos": "812", "end_pos": "812" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJL2-1.738.738", "start_pos": 738, "end_pos": 738, "uniprot_canonical_ac": "Q7XJL2-1", "length": 925, "uniprot_id": "GLR31_ARATH", "protein_name": "Glutamate receptor 3.1", "refseq_ac": "NP_001318239", "refseq_name": "glutamate receptor 2", "gene_name": "GLR3.1", "gene_names_uniprotkb": "GLR3.1; ACL1; F5J6.2; GLR2", "gene_names_refseq": "ATGLR2; ATGLR3.1; F5J6.2; F5J6_2; GLR2; GLR3.1; GLUTAMATE RECEPTOR 2; glutamate receptor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IASSRLVPLASPEEYANALQ", "down_seq": "GTVAAIVDERPYIDLFLSDY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn738", "evidence": [ { "id": "Q7XJL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "309", "end_pos": "309" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "738", "end_pos": "738" }, { "start_pos": "812", "end_pos": "812" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJL2-1.812.812", "start_pos": 812, "end_pos": 812, "uniprot_canonical_ac": "Q7XJL2-1", "length": 925, "uniprot_id": "GLR31_ARATH", "protein_name": "Glutamate receptor 3.1", "refseq_ac": "NP_001318239", "refseq_name": "glutamate receptor 2", "gene_name": "GLR3.1", "gene_names_uniprotkb": "GLR3.1; ACL1; F5J6.2; GLR2", "gene_names_refseq": "ATGLR2; ATGLR3.1; F5J6.2; F5J6_2; GLR2; GLR3.1; GLUTAMATE RECEPTOR 2; glutamate receptor 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7XJL2", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LGLSETGELQKIHDRWLSKS", "down_seq": "CSSPHGSQSGDSEQLNVHSF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn812", "evidence": [ { "id": "Q7XJL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7XJL2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "309", "end_pos": "309" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "738", "end_pos": "738" }, { "start_pos": "812", "end_pos": "812" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7XJU1-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "Q7XJU1-1", "length": 153, "uniprot_id": "BH154_ARATH", "protein_name": "Transcription factor bHLH154", "refseq_ac": "NP_001325383", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "BHLH154", "gene_names_uniprotkb": "BHLH154; F20M17.23; T9H9.27", "gene_names_refseq": "T9H9.27", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJU1", "url": "https://www.uniprot.org/uniprotkb/Q7XJU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QYIQFLQEQVKVLSAPYLQA", "down_seq": "PSTTEEEVEEYSLRSKGLCL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr93", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IIQTLCSSTLYMQICEKTLK", "down_seq": "RTDKGFALDNPTTFLKSAIE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn128", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QCKLLVEDAKEETVASLNKI", "down_seq": "VTEVNSFEKVVPDLESWLSA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn197", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ETCLDGFEEGNLKSEVKTSV", "down_seq": "SSQVLTSNSLALIKTFTENL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn243", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WVSNDDRRMLRAVDVKALKP", "down_seq": "ATVAKDGSGDFTTINDALRA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn301", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.351.351", "start_pos": 351, "end_pos": 351, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IIYVKQGIYDEYVTVDKKKA", "down_seq": "LTMVGDGSQKTIVTGNKSHA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn351", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q7Y201-1.367.367", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.367.367", "start_pos": 367, "end_pos": 367, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KKKANLTMVGDGSQKTIVTG", "down_seq": "KSHAKKIRTFLTATFVAQGE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn367", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q7Y201-1.351.351", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.522.522", "start_pos": 522, "end_pos": 522, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NEDLKPVKEEYKSYLGRPWK", "down_seq": "YSRTIIMESKIENVIDPVGW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn522", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.588.588", "start_pos": 588, "end_pos": 588, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DTTSRVKWPGFKVINKEEAL", "down_seq": "YTVGPFLQGDWISASGSPVK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn588", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YVAYEKRNEQQQQQQQAKNH", "down_seq": "KSGSGNNVVKDSDKKSPSPP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn66", "evidence": [ { "id": "Q7Y201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y201#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y201-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "Q7Y201-1", "length": 614, "uniprot_id": "PME13_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 13", "refseq_ac": "NP_850077", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME13", "gene_names_uniprotkb": "PME13; ARATH13; T9J22.12", "gene_names_refseq": "T9J22.12; T9J22_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y201", "url": "https://www.uniprot.org/uniprotkb/Q7Y201" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KSGSGNNVVKDSDKKSPSPP", "down_seq": "PSQKAPVSAAQSVKPGQGDK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr87", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y228-1.140.140", "start_pos": 140, "end_pos": 140, "uniprot_canonical_ac": "Q7Y228-1", "length": 681, "uniprot_id": "LAMP1_ARATH", "protein_name": "Probable glutamate carboxypeptidase LAMP1", "refseq_ac": "NP_197475", "refseq_name": "Peptidase M28 family protein", "gene_name": "LAMP1", "gene_names_uniprotkb": "LAMP1", "gene_names_refseq": "T29J13.160; T29J13_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GDNPYANEVMPTFHGYAKSG", "down_seq": "VSGPVVYANYGRVEDFVRLK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn140", "evidence": [ { "id": "Q7Y228", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y228#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y228-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "Q7Y228-1", "length": 681, "uniprot_id": "LAMP1_ARATH", "protein_name": "Probable glutamate carboxypeptidase LAMP1", "refseq_ac": "NP_197475", "refseq_name": "Peptidase M28 family protein", "gene_name": "LAMP1", "gene_names_uniprotkb": "LAMP1", "gene_names_refseq": "T29J13.160; T29J13_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VYANYGRVEDFVRLKKDMGV", "down_seq": "VSGAVVIARYGQIYRGDIVK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn166", "evidence": [ { "id": "Q7Y228", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y228#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y228-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "Q7Y228-1", "length": 681, "uniprot_id": "LAMP1_ARATH", "protein_name": "Probable glutamate carboxypeptidase LAMP1", "refseq_ac": "NP_197475", "refseq_name": "Peptidase M28 family protein", "gene_name": "LAMP1", "gene_names_uniprotkb": "LAMP1", "gene_names_refseq": "T29J13.160; T29J13_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VVGDVSDGDVYPVGPGPGVL", "down_seq": "LSYIGETVIAKIENVIGVIE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn299", "evidence": [ { "id": "Q7Y228", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y228#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y228-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q7Y228-1", "length": 681, "uniprot_id": "LAMP1_ARATH", "protein_name": "Probable glutamate carboxypeptidase LAMP1", "refseq_ac": "NP_197475", "refseq_name": "Peptidase M28 family protein", "gene_name": "LAMP1", "gene_names_uniprotkb": "LAMP1", "gene_names_refseq": "T29J13.160; T29J13_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FSSPPKSHYHELFISTSFSD", "down_seq": "ASVALNLHTLTRRPHVAGTV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn42", "evidence": [ { "id": "Q7Y228", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y228#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y228-1.441.441", "start_pos": 441, "end_pos": 441, "uniprot_canonical_ac": "Q7Y228-1", "length": 681, "uniprot_id": "LAMP1_ARATH", "protein_name": "Probable glutamate carboxypeptidase LAMP1", "refseq_ac": "NP_197475", "refseq_name": "Peptidase M28 family protein", "gene_name": "LAMP1", "gene_names_uniprotkb": "LAMP1", "gene_names_refseq": "T29J13.160; T29J13_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ATPQLDELIKVAAQEVRDPD", "down_seq": "ATQTIYESWIGSSDSVVIRR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn441", "evidence": [ { "id": "Q7Y228", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y228#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y228-1.536.536", "start_pos": 536, "end_pos": 536, "uniprot_canonical_ac": "Q7Y228-1", "length": 681, "uniprot_id": "LAMP1_ARATH", "protein_name": "Probable glutamate carboxypeptidase LAMP1", "refseq_ac": "NP_197475", "refseq_name": "Peptidase M28 family protein", "gene_name": "LAMP1", "gene_names_uniprotkb": "LAMP1", "gene_names_refseq": "T29J13.160; T29J13_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y228", "url": "https://www.uniprot.org/uniprotkb/Q7Y228", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MASVLGLVALRLADEEIIPF", "down_seq": "YTSYALELKKSAEDLENEKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn536", "evidence": [ { "id": "Q7Y228", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y228#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "536", "end_pos": "536" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JN2-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "Q84JN2-1", "length": 424, "uniprot_id": "TIN1_ARATH", "protein_name": "Protein TUNICAMYCIN INDUCED 1", "refseq_ac": "NP_201256", "refseq_name": "tunicamycin induced protein", "gene_name": "TIN1", "gene_names_uniprotkb": "TIN1; MUB3.3", "gene_names_refseq": "MUB3.3; MUB3_3; TIN1; tunicamycin induced 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JN2", "url": "https://www.uniprot.org/uniprotkb/Q84JN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84JN2", "url": "https://www.uniprot.org/uniprotkb/Q84JN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TVKGARSVSLRHPIDLPLPL", "down_seq": "QSSNEFASGLLSLAEQLRRA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn197", "evidence": [ { "id": "Q84JN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JN2#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "197", "end_pos": "197" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "406", "end_pos": "406" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JN2-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "Q84JN2-1", "length": 424, "uniprot_id": "TIN1_ARATH", "protein_name": "Protein TUNICAMYCIN INDUCED 1", "refseq_ac": "NP_201256", "refseq_name": "tunicamycin induced protein", "gene_name": "TIN1", "gene_names_uniprotkb": "TIN1; MUB3.3", "gene_names_refseq": "MUB3.3; MUB3_3; TIN1; tunicamycin induced 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JN2", "url": "https://www.uniprot.org/uniprotkb/Q84JN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84JN2", "url": "https://www.uniprot.org/uniprotkb/Q84JN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AMTTVLTPREFTTMWPITSI", "down_seq": "GSNANLLGFEKLLTSVLGPK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "Q84JN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JN2#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "197", "end_pos": "197" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "406", "end_pos": "406" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JN2-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "Q84JN2-1", "length": 424, "uniprot_id": "TIN1_ARATH", "protein_name": "Protein TUNICAMYCIN INDUCED 1", "refseq_ac": "NP_201256", "refseq_name": "tunicamycin induced protein", "gene_name": "TIN1", "gene_names_uniprotkb": "TIN1; MUB3.3", "gene_names_refseq": "MUB3.3; MUB3_3; TIN1; tunicamycin induced 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JN2", "url": "https://www.uniprot.org/uniprotkb/Q84JN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84JN2", "url": "https://www.uniprot.org/uniprotkb/Q84JN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VMRVDPIPLEDTIAQNVITG", "down_seq": "VTMSKLPIIESPPSPFTL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn406", "evidence": [ { "id": "Q84JN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JN2#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "197", "end_pos": "197" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "406", "end_pos": "406" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JN2-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q84JN2-1", "length": 424, "uniprot_id": "TIN1_ARATH", "protein_name": "Protein TUNICAMYCIN INDUCED 1", "refseq_ac": "NP_201256", "refseq_name": "tunicamycin induced protein", "gene_name": "TIN1", "gene_names_uniprotkb": "TIN1; MUB3.3", "gene_names_refseq": "MUB3.3; MUB3_3; TIN1; tunicamycin induced 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JN2", "url": "https://www.uniprot.org/uniprotkb/Q84JN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84JN2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JN2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FASGLLSLAEQLRRASTDQE", "down_seq": "PVLSLRIVGPTSLASTSQSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JN2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JN2" } ], "site_lbl": "Ser223" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "197", "end_pos": "197" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "406", "end_pos": "406" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JX1-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "Q84JX1-1", "length": 524, "uniprot_id": "PME19_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 19", "refseq_ac": "NP_172625", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME19", "gene_names_uniprotkb": "PME19; ARATH5; T23J18.25", "gene_names_refseq": "T23J18.25; T23J18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JX1", "url": "https://www.uniprot.org/uniprotkb/Q84JX1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84JX1", "url": "https://www.uniprot.org/uniprotkb/Q84JX1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VIYIKTGIYDEIVVIENTKP", "down_seq": "LTLIGDGQDLTIITSNLSAS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn265", "evidence": [ { "id": "Q84JX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JX1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "265", "end_pos": "265" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "412", "end_pos": "412" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q84JX1-1.281.281", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JX1-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "Q84JX1-1", "length": 524, "uniprot_id": "PME19_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 19", "refseq_ac": "NP_172625", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME19", "gene_names_uniprotkb": "PME19; ARATH5; T23J18.25", "gene_names_refseq": "T23J18.25; T23J18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JX1", "url": "https://www.uniprot.org/uniprotkb/Q84JX1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84JX1", "url": "https://www.uniprot.org/uniprotkb/Q84JX1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NTKPNLTLIGDGQDLTIITS", "down_seq": "LSASNVRRTFNTATVASNGN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn281", "evidence": [ { "id": "Q84JX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JX1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "265", "end_pos": "265" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "412", "end_pos": "412" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q84JX1-1.265.265", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JX1-1.412.412", "start_pos": 412, "end_pos": 412, "uniprot_canonical_ac": "Q84JX1-1", "length": 524, "uniprot_id": "PME19_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 19", "refseq_ac": "NP_172625", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME19", "gene_names_uniprotkb": "PME19; ARATH5; T23J18.25", "gene_names_refseq": "T23J18.25; T23J18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JX1", "url": "https://www.uniprot.org/uniprotkb/Q84JX1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84JX1", "url": "https://www.uniprot.org/uniprotkb/Q84JX1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ITAQSRAFKDIYSGFTIQKC", "down_seq": "ITASSDLDTTTVKTYLGRPW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn412", "evidence": [ { "id": "Q84JX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84JX1#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "265", "end_pos": "265" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "412", "end_pos": "412" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84K90-1.262.262", "start_pos": 262, "end_pos": 262, "uniprot_canonical_ac": "Q84K90-1", "length": 263, "uniprot_id": "RHIP1_ARATH", "protein_name": "RGS1-HXK1-interacting protein 1", "refseq_ac": "NP_194371", "refseq_name": "chromosome-associated kinesin", "gene_name": "RHIP1", "gene_names_uniprotkb": "RHIP1; M3E9.160", "gene_names_refseq": "M3E9.160; M3E9_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84K90", "url": "https://www.uniprot.org/uniprotkb/Q84K90" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q84K90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84K90" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q84K90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84K90", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRQKRIALNKRIMGMSDLGV", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84K90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84K90" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser262" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "262", "end_pos": "262" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84L08-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q84L08-1", "length": 341, "uniprot_id": "GFT1_ARATH", "protein_name": "GDP-fucose transporter 1", "refseq_ac": "NP_197498", "refseq_name": "golgi nucleotide sugar transporter 4", "gene_name": "GFT1", "gene_names_uniprotkb": "GFT1; F28I16.130; GONST4", "gene_names_refseq": "F28I16.130; F28I16_130; GONST4; golgi nucleotide sugar transporter 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84L08", "url": "https://www.uniprot.org/uniprotkb/Q84L08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84L08", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84L08" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84L08", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84L08" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84L08", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84L08", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VGYQQSVKLDKPIEKVSEKD", "down_seq": "EKGEEDEELTQLVPGKLASV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84L08", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84L08" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser320" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "320", "end_pos": "320" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84LG2-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSPQPHPYMWGVQHMMPPYG", "down_seq": "PPHPYVTMYPPGGMYAHPSL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr86", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84LG2-1.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Redox-mediated mechanisms regulate DNA binding activity of the G-group of basic region leucine zipper (bZIP) transcription factors in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2012-08-10", "authors": "Shaikhali Jehad, Nor\u00e9n Louise, de Dios Barajas-L\u00f3pez Juan, Srivastava Vaibhav, K\u00f6nig Janine, Sauer Uwe H, Wingsle Gunnar, Dietz Karl-Josef, Strand \u00c5sa", "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "22718771", "url": "https://glygen.org/publication/PubMed/22718771" } ] } ], "crossref": [ { "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22718771", "url": "https://glygen.org/publication/PubMed/22718771", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "MIIGKNNEAGKNSGASANGA", "down_seq": "SKSAESGSDGSSDGSDANSQ", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "L", "comment": "Slightly increases DNA binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" }, { "database": "PubMed", "id": "22718771", "url": "https://glygen.org/publication/PubMed/22718771" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84LG2-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Redox-mediated mechanisms regulate DNA binding activity of the G-group of basic region leucine zipper (bZIP) transcription factors in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2012-08-10", "authors": "Shaikhali Jehad, Nor\u00e9n Louise, de Dios Barajas-L\u00f3pez Juan, Srivastava Vaibhav, K\u00f6nig Janine, Sauer Uwe H, Wingsle Gunnar, Dietz Karl-Josef, Strand \u00c5sa", "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "22718771", "url": "https://glygen.org/publication/PubMed/22718771" } ] } ], "crossref": [ { "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22718771", "url": "https://glygen.org/publication/PubMed/22718771", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "RRKQSNRESARRSRLRKQAE", "down_seq": "DELAQRAEVLNGENSSLRAE", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "L", "comment": "Significantly increases DNA binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" }, { "database": "PubMed", "id": "22718771", "url": "https://glygen.org/publication/PubMed/22718771" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84LG2-1.153.153", "start_pos": 153, "end_pos": 153, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" }, { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] } ], "crossref": [ { "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVIEGDGKPSDGKEKLPIKR", "down_seq": "KGSLGSLNMIIGKNNEAGKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ], "site_lbl": "Ser153" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q84LG2-1.156.156", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q84LG2-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84LG2-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" }, { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGDGKPSDGKEKLPIKRSKG", "down_seq": "LGSLNMIIGKNNEAGKNSGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser156" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q84LG2-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q84LG2-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84LG2-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" }, { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKPSDGKEKLPIKRSKGSLG", "down_seq": "LNMIIGKNNEAGKNSGASAN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser159" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q84LG2-1.153.153", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q84LG2-1.156.156", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84LG2-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DANSQNDSGSRHNGKDGETA", "down_seq": "ESGGSAHGPPRNGSNLPVNQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser218" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q84LG2-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q84LG2-1.223.223", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84LG2-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NSQNDSGSRHNGKDGETASE", "down_seq": "GGSAHGPPRNGSNLPVNQTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser220" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q84LG2-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q84LG2-1.223.223", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84LG2-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q84LG2-1", "length": 389, "uniprot_id": "BZP68_ARATH", "protein_name": "bZIP transcription factor 68", "refseq_ac": "NP_174494", "refseq_name": "basic region/leucine zipper transcription factor 68", "gene_name": "BZIP68", "gene_names_uniprotkb": "BZIP68; F3C3.7", "gene_names_refseq": "AtbZIP68; F3C3.7; F3C3_7; bZIP68; basic region/leucine zipper transcription factor 68", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LG2", "url": "https://www.uniprot.org/uniprotkb/Q84LG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NDSGSRHNGKDGETASESGG", "down_seq": "AHGPPRNGSNLPVNQTVAIM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84LG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84LG2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser223" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "320", "end_pos": "320" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "153", "end_pos": "153" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "223", "end_pos": "223" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q84LG2-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q84LG2-1.220.220", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84M93-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "Q84M93-1", "length": 486, "uniprot_id": "MPK17_ARATH", "protein_name": "Mitogen-activated protein kinase 17", "refseq_ac": "NP_001030939", "refseq_name": "MAP kinase 17", "gene_name": "MPK17", "gene_names_uniprotkb": "MPK17; F2I9.7", "gene_names_refseq": "ATMPK17; F2I9.7; F2I9_7; MAP kinase 17; MPK17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ICDLGLARVSFTDSPSAVFW", "down_seq": "DYVATRWYRAPELCGSFYSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" }, { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr178" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "472", "end_pos": "472" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q84M93-1.180.180", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q84M93-1.183.183", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84M93-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "Q84M93-1", "length": 486, "uniprot_id": "MPK17_ARATH", "protein_name": "Mitogen-activated protein kinase 17", "refseq_ac": "NP_001030939", "refseq_name": "MAP kinase 17", "gene_name": "MPK17", "gene_names_uniprotkb": "MPK17; F2I9.7", "gene_names_refseq": "ATMPK17; F2I9.7; F2I9_7; MAP kinase 17; MPK17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DLGLARVSFTDSPSAVFWTD", "down_seq": "VATRWYRAPELCGSFYSNYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" }, { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Tyr180" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "472", "end_pos": "472" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q84M93-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q84M93-1.183.183", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84M93-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "Q84M93-1", "length": 486, "uniprot_id": "MPK17_ARATH", "protein_name": "Mitogen-activated protein kinase 17", "refseq_ac": "NP_001030939", "refseq_name": "MAP kinase 17", "gene_name": "MPK17", "gene_names_uniprotkb": "MPK17; F2I9.7", "gene_names_refseq": "ATMPK17; F2I9.7; F2I9_7; MAP kinase 17; MPK17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LARVSFTDSPSAVFWTDYVA", "down_seq": "RWYRAPELCGSFYSNYTPAI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" }, { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr183" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "472", "end_pos": "472" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q84M93-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q84M93-1.180.180", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84M93-1.397.397", "start_pos": 397, "end_pos": 397, "uniprot_canonical_ac": "Q84M93-1", "length": 486, "uniprot_id": "MPK17_ARATH", "protein_name": "Mitogen-activated protein kinase 17", "refseq_ac": "NP_001030939", "refseq_name": "MAP kinase 17", "gene_name": "MPK17", "gene_names_uniprotkb": "MPK17; F2I9.7", "gene_names_refseq": "ATMPK17; F2I9.7; F2I9_7; MAP kinase 17; MPK17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QFKQEFARLEEHNDDEEEHN", "down_seq": "PPHQRKYTSLPRERVCSSED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser397" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "472", "end_pos": "472" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q84M93-1.406.406", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84M93-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "Q84M93-1", "length": 486, "uniprot_id": "MPK17_ARATH", "protein_name": "Mitogen-activated protein kinase 17", "refseq_ac": "NP_001030939", "refseq_name": "MAP kinase 17", "gene_name": "MPK17", "gene_names_uniprotkb": "MPK17; F2I9.7", "gene_names_refseq": "ATMPK17; F2I9.7; F2I9_7; MAP kinase 17; MPK17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEHNDDEEEHNSPPHQRKYT", "down_seq": "LPRERVCSSEDEGSDSVHAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser406" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "472", "end_pos": "472" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q84M93-1.397.397", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84M93-1.472.472", "start_pos": 472, "end_pos": 472, "uniprot_canonical_ac": "Q84M93-1", "length": 486, "uniprot_id": "MPK17_ARATH", "protein_name": "Mitogen-activated protein kinase 17", "refseq_ac": "NP_001030939", "refseq_name": "MAP kinase 17", "gene_name": "MPK17", "gene_names_uniprotkb": "MPK17; F2I9.7", "gene_names_refseq": "ATMPK17; F2I9.7; F2I9_7; MAP kinase 17; MPK17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84M93", "url": "https://www.uniprot.org/uniprotkb/Q84M93" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQVDKAATPVKRSACLMRSD", "down_seq": "ICASRCVGVSSAVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84M93", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84M93" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser472" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "472", "end_pos": "472" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84P17-1.527.527", "start_pos": 527, "end_pos": 527, "uniprot_canonical_ac": "Q84P17-1", "length": 727, "uniprot_id": "AEE18_ARATH", "protein_name": "Probable acyl-activating enzyme 18, peroxisomal", "refseq_ac": "NP_001077723", "refseq_name": "acyl-activating enzyme 18", "gene_name": "AAE18", "gene_names_uniprotkb": "AAE18; F7A10.14", "gene_names_refseq": "AAE18; F7A10.14; F7A10_14; acyl-activating enzyme 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84P17", "url": "https://www.uniprot.org/uniprotkb/Q84P17" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LASSYIIGSPLQPQAFGAFS", "down_seq": "PSMTTRIIIFDENGVPYPDD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr527", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "527", "end_pos": "527" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84R10-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q84R10-1", "length": 519, "uniprot_id": "PME36_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 36", "refseq_ac": "NP_191632", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME36", "gene_names_uniprotkb": "PME36; ARATH36; T4C21.140", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84R10", "url": "https://www.uniprot.org/uniprotkb/Q84R10" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84R10", "url": "https://www.uniprot.org/uniprotkb/Q84R10", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HTCLDGLIQQRQGHKPLVHS", "down_seq": "VTFVLHEALAFYKKSRGHMK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "Q84R10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84R10#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "227", "end_pos": "227" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84R10-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "Q84R10-1", "length": 519, "uniprot_id": "PME36_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 36", "refseq_ac": "NP_191632", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME36", "gene_names_uniprotkb": "PME36; ARATH36; T4C21.140", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84R10", "url": "https://www.uniprot.org/uniprotkb/Q84R10" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84R10", "url": "https://www.uniprot.org/uniprotkb/Q84R10", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CEKLYDESEARLSKLVVDHE", "down_seq": "FTVEDVRTWLSGVLANHHTC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn92", "evidence": [ { "id": "Q84R10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84R10#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "227", "end_pos": "227" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84R10-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "Q84R10-1", "length": 519, "uniprot_id": "PME36_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 36", "refseq_ac": "NP_191632", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME36", "gene_names_uniprotkb": "PME36; ARATH36; T4C21.140", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84R10", "url": "https://www.uniprot.org/uniprotkb/Q84R10" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84R10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84R10", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VSWNPTSSRADFVVARDGSA", "down_seq": "HRTINQALAAVSRMGKSRLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84R10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84R10" } ], "site_lbl": "Thr215" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "227", "end_pos": "227" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q84R10-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q84R10-1.227.227", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84R10-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q84R10-1", "length": 519, "uniprot_id": "PME36_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 36", "refseq_ac": "NP_191632", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME36", "gene_names_uniprotkb": "PME36; ARATH36; T4C21.140", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84R10", "url": "https://www.uniprot.org/uniprotkb/Q84R10" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84R10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84R10", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NPTSSRADFVVARDGSATHR", "down_seq": "INQALAAVSRMGKSRLNRVI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84R10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84R10" } ], "site_lbl": "Thr218" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "227", "end_pos": "227" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q84R10-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q84R10-1.227.227", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84R10-1.227.227", "start_pos": 227, "end_pos": 227, "uniprot_canonical_ac": "Q84R10-1", "length": 519, "uniprot_id": "PME36_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 36", "refseq_ac": "NP_191632", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME36", "gene_names_uniprotkb": "PME36; ARATH36; T4C21.140", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84R10", "url": "https://www.uniprot.org/uniprotkb/Q84R10" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84R10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84R10", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVARDGSATHRTINQALAAV", "down_seq": "RMGKSRLNRVIIYIKAGVYN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84R10", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84R10" } ], "site_lbl": "Ser227" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "215", "end_pos": "215" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "227", "end_pos": "227" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q84R10-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q84R10-1.218.218", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84VG7-1.447.447", "start_pos": 447, "end_pos": 447, "uniprot_canonical_ac": "Q84VG7-1", "length": 587, "uniprot_id": "FES1_ARATH", "protein_name": "Protein FRIGIDA-ESSENTIAL 1", "refseq_ac": "NP_850221", "refseq_name": "Zinc finger C-x8-C-x5-C-x3-H type family protein", "gene_name": "FES1", "gene_names_uniprotkb": "FES1; T1B8", "gene_names_refseq": "FES1; FRIGIDA-ESSENTIAL 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VG7", "url": "https://www.uniprot.org/uniprotkb/Q84VG7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EAHGVVEGVATSVVDQNDTA", "down_seq": "PSKEISSATAAENRVVLKRI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr447", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "395", "end_pos": "395" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q84VG7-1.453.453", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84VG7-1.395.395", "start_pos": 395, "end_pos": 395, "uniprot_canonical_ac": "Q84VG7-1", "length": 587, "uniprot_id": "FES1_ARATH", "protein_name": "Protein FRIGIDA-ESSENTIAL 1", "refseq_ac": "NP_850221", "refseq_name": "Zinc finger C-x8-C-x5-C-x3-H type family protein", "gene_name": "FES1", "gene_names_uniprotkb": "FES1; T1B8", "gene_names_refseq": "FES1; FRIGIDA-ESSENTIAL 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VG7", "url": "https://www.uniprot.org/uniprotkb/Q84VG7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLSSKGEHARKSSCQQKDGD", "down_seq": "ASGPQARDCKNDDKSSSCSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser395" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "395", "end_pos": "395" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VG7-1.453.453", "start_pos": 453, "end_pos": 453, "uniprot_canonical_ac": "Q84VG7-1", "length": 587, "uniprot_id": "FES1_ARATH", "protein_name": "Protein FRIGIDA-ESSENTIAL 1", "refseq_ac": "NP_850221", "refseq_name": "Zinc finger C-x8-C-x5-C-x3-H type family protein", "gene_name": "FES1", "gene_names_uniprotkb": "FES1; T1B8", "gene_names_refseq": "FES1; FRIGIDA-ESSENTIAL 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VG7", "url": "https://www.uniprot.org/uniprotkb/Q84VG7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGVATSVVDQNDTATPSKEI", "down_seq": "SATAAENRVVLKRIKPAGHD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser453" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "395", "end_pos": "395" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q84VG7-1.447.447", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VG7-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q84VG7-1", "length": 587, "uniprot_id": "FES1_ARATH", "protein_name": "Protein FRIGIDA-ESSENTIAL 1", "refseq_ac": "NP_850221", "refseq_name": "Zinc finger C-x8-C-x5-C-x3-H type family protein", "gene_name": "FES1", "gene_names_uniprotkb": "FES1; T1B8", "gene_names_refseq": "FES1; FRIGIDA-ESSENTIAL 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VG7", "url": "https://www.uniprot.org/uniprotkb/Q84VG7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSD", "down_seq": "DMDIDDDEVEQKVQVHTIVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VG7" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "395", "end_pos": "395" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VW9-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAGRNIEKMA", "down_seq": "IDAQLRQLVPAKVSEDDKLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" }, { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VW9-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SLQREIQAAFRTDEIRRTPP", "down_seq": "PQDEMRAGMSYFHETIWKGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr232" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VW9-1.705.705", "start_pos": 705, "end_pos": 705, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FRTLQRFTAATLEHGMNPPI", "down_seq": "PKPEWRALLDEMAVVATEEY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "site_lbl": "Ser705" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84VW9-1.755.755", "start_pos": 755, "end_pos": 755, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FVEYFRLATPELEYGRMNIG", "down_seq": "RPSKRKPSGGIESLRAIPWI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser755" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q84VW9-1.763.763", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q84VW9-1.768.768", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VW9-1.763.763", "start_pos": 763, "end_pos": 763, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPELEYGRMNIGSRPSKRKP", "down_seq": "GGIESLRAIPWIFAWTQTRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser763" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q84VW9-1.755.755", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q84VW9-1.768.768", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VW9-1.768.768", "start_pos": 768, "end_pos": 768, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YGRMNIGSRPSKRKPSGGIE", "down_seq": "LRAIPWIFAWTQTRFHLPVW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser768" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q84VW9-1.755.755", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q84VW9-1.763.763", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VW9-1.929.929", "start_pos": 929, "end_pos": 929, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRDANYNVTLRPHISKEIMQ", "down_seq": "SKSAQELVKLNPTSEYAPGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser929" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q84VW9-1.930.930", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q84VW9-1.932.932", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VW9-1.930.930", "start_pos": 930, "end_pos": 930, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RDANYNVTLRPHISKEIMQS", "down_seq": "KSAQELVKLNPTSEYAPGLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser930" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q84VW9-1.929.929", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q84VW9-1.932.932", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VW9-1.932.932", "start_pos": 932, "end_pos": 932, "uniprot_canonical_ac": "Q84VW9-1", "length": 968, "uniprot_id": "CAPP3_ARATH", "protein_name": "Phosphoenolpyruvate carboxylase 3", "refseq_ac": "NP_001326778", "refseq_name": "phosphoenolpyruvate carboxylase 3", "gene_name": "PPC3", "gene_names_uniprotkb": "PPC3; K15M2.8; PEPC; PPC", "gene_names_refseq": "ATPPC3; PPC3; phosphoenolpyruvate carboxylase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VW9", "url": "https://www.uniprot.org/uniprotkb/Q84VW9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ANYNVTLRPHISKEIMQSSK", "down_seq": "AQELVKLNPTSEYAPGLEDT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VW9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VW9" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser932" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "755", "end_pos": "755" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "930", "end_pos": "930" }, { "start_pos": "932", "end_pos": "932" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q84VW9-1.929.929", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q84VW9-1.930.930", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84VX4-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q84VX4-1", "length": 777, "uniprot_id": "MPS1_ARATH", "protein_name": "Serine/threonine-protein kinase MPS1", "refseq_ac": "NP_565160", "refseq_name": "putative protein kinase 1", "gene_name": "MPS1", "gene_names_uniprotkb": "MPS1; PPK1; T32E8.5", "gene_names_refseq": "PPK1; T32E8.5; T32E8_5; putative protein kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VX4", "url": "https://www.uniprot.org/uniprotkb/Q84VX4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q84VX4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VX4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q84VX4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VX4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSEHFNPSDRQMDFGKSAVT", "down_seq": "LESNLDVQRKSQSLIGTSQD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84VX4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84VX4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84W89-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "Q84W89-1", "length": 633, "uniprot_id": "RH37_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 37", "refseq_ac": "NP_001324553", "refseq_name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "gene_name": "RH37", "gene_names_uniprotkb": "RH37; F14N22.21", "gene_names_refseq": "F14N22.21; F14N22_21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84W89", "url": "https://www.uniprot.org/uniprotkb/Q84W89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EIDLGEALNLNIRRCKYVKP", "down_seq": "PVQRHAIPILLEGRDLMACA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr183", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "579", "end_pos": "579" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84W89-1.579.579", "start_pos": 579, "end_pos": 579, "uniprot_canonical_ac": "Q84W89-1", "length": 633, "uniprot_id": "RH37_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 37", "refseq_ac": "NP_001324553", "refseq_name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "gene_name": "RH37", "gene_names_uniprotkb": "RH37; F14N22.21", "gene_names_refseq": "F14N22.21; F14N22_21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84W89", "url": "https://www.uniprot.org/uniprotkb/Q84W89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84W89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84W89" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q84W89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84W89" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q84W89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84W89", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGKNRRSGGRFGGRDFRREG", "down_seq": "FGSGRGGYGGGGGGYGGGGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84W89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84W89" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser579" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "579", "end_pos": "579" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84W89-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "Q84W89-1", "length": 633, "uniprot_id": "RH37_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 37", "refseq_ac": "NP_001324553", "refseq_name": "P-loop containing nucleoside triphosphate hydrolases superfamily protein", "gene_name": "RH37", "gene_names_uniprotkb": "RH37; F14N22.21", "gene_names_refseq": "F14N22.21; F14N22_21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84W89", "url": "https://www.uniprot.org/uniprotkb/Q84W89" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84W89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84W89" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84W89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84W89", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSGVGVGGGGGYRADAGRPG", "down_seq": "GSGYGGRGGGGWNNRSGGWD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84W89", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84W89" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser89" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "579", "end_pos": "579" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WI4-1.367.367", "start_pos": 367, "end_pos": 367, "uniprot_canonical_ac": "Q84WI4-1", "length": 794, "uniprot_id": "SC23G_ARATH", "protein_name": "Protein transport protein SEC23 G", "refseq_ac": "NP_568626", "refseq_name": "Sec23/Sec24 protein transport family protein", "gene_name": "SEC23G", "gene_names_uniprotkb": "SEC23G; MQO24.2; SEC23C; SEC23E", "gene_names_refseq": "MQO24.2; MQO24_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WI4", "url": "https://www.uniprot.org/uniprotkb/Q84WI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q84WI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WI4" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] } ], "crossref": [ { "id": "Q84WI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WI4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RTHRDIITGHVSYYDKSCGF", "down_seq": "KKLAKRLCDSSVVLDVFACS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WI4" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ], "site_lbl": "Tyr367" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "367", "end_pos": "367" }, { "start_pos": "523", "end_pos": "523" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WI4-1.523.523", "start_pos": 523, "end_pos": 523, "uniprot_canonical_ac": "Q84WI4-1", "length": 794, "uniprot_id": "SC23G_ARATH", "protein_name": "Protein transport protein SEC23 G", "refseq_ac": "NP_568626", "refseq_name": "Sec23/Sec24 protein transport family protein", "gene_name": "SEC23G", "gene_names_uniprotkb": "SEC23G; MQO24.2; SEC23C; SEC23E", "gene_names_refseq": "MQO24.2; MQO24_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WI4", "url": "https://www.uniprot.org/uniprotkb/Q84WI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WI4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QNRKPQPGSAFFIQFITRYR", "down_seq": "GNGAMRKRVTTVARRWVAGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WI4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WI4" } ], "site_lbl": "Tyr523" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "367", "end_pos": "367" }, { "start_pos": "523", "end_pos": "523" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WP6-1.317.317", "start_pos": 317, "end_pos": 317, "uniprot_canonical_ac": "Q84WP6-1", "length": 365, "uniprot_id": "NAC43_ARATH", "protein_name": "NAC domain-containing protein 43", "refseq_ac": "NP_182200", "refseq_name": "NAC (No Apical Meristem) domain transcriptional regulator superfamily protein", "gene_name": "NAC043", "gene_names_uniprotkb": "NAC043; EMB2301; F19D11.5; NST1", "gene_names_refseq": "ANAC043; Arabidopsis NAC domain containing protein 43; EMBRYO DEFECTIVE 2301; F19D11.5; NAC SECONDARY WALL THICKENING PROMOTING FACTOR1; NST1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WP6", "url": "https://www.uniprot.org/uniprotkb/Q84WP6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q84WP6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WP6" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q84WP6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WP6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ITAVNESHVGHDHLALPSVR", "down_seq": "PYPSLNRSASYHAGLTQEYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84WP6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84WP6" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser317" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WS0-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLHTTYSHEFLGLEFGIGLW", "down_seq": "ETSLSSDVIIGLVDTGISPE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RDTHMTPVPSRWRGSCDEGT", "down_seq": "FSSSECNKKIIGASAFYKGY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn183", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KKIIGASAFYKGYESIVGKI", "down_seq": "ETTDFRSTRDAQGHGTHTAS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.331.331", "start_pos": 331, "end_pos": 331, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GFGAMQKNIFVSCSAGNSGP", "down_seq": "ASTVSNGAPWLMTVAASYTD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr331", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RPMMFFRSFIVFFFLIFFAS", "down_seq": "VSSRKQTYVIHTVTTSTKHI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn36", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.385.385", "start_pos": 385, "end_pos": 385, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLVGSSLYKGKSLKNLPLAF", "down_seq": "RTAGEESGAVFCIRDSLKRE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn385", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.477.477", "start_pos": 477, "end_pos": 477, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AVSLGFSDGKTLLNYLAGAA", "down_seq": "ATASVRFRGTAYGATAPMVA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn477", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.644.644", "start_pos": 644, "end_pos": 644, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DPGLVYDTSTVDYLNYLCSL", "down_seq": "YTSERILLFSGTNYTCASNA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn644", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q84WS0-1.657.657", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.657.657", "start_pos": 657, "end_pos": 657, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LNYLCSLNYTSERILLFSGT", "down_seq": "YTCASNAVVLSPGDLNYPSF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn657", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q84WS0-1.644.644", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.747.747", "start_pos": 747, "end_pos": 747, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FQKARERLSYTVTYDAEASR", "down_seq": "SSSSSFGVLVWICDKYNVRS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn747", "evidence": [ { "id": "Q84WS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q84WS0#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84WS0-1.552.552", "start_pos": 552, "end_pos": 552, "uniprot_canonical_ac": "Q84WS0-1", "length": 774, "uniprot_id": "SBT11_ARATH", "protein_name": "Subtilisin-like protease SBT1.1", "refseq_ac": "NP_563639", "refseq_name": "subtilase family protein", "gene_name": "SBTI1.1", "gene_names_uniprotkb": "SBTI1.1; F22M8.3", "gene_names_refseq": "ATSBT1.1; F22M8.3; F22M8_3; SBTI1.1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteolytic processing of a precursor protein for a growth-promoting peptide by a subtilisin serine protease in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2008-10", "authors": "Srivastava Renu, Liu Jian-Xiang, Howell Stephen H", "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" } ], "reference": [ { "type": "PubMed", "id": "18643977", "url": "https://glygen.org/publication/PubMed/18643977" } ] } ], "crossref": [ { "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18643977", "url": "https://glygen.org/publication/PubMed/18643977", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPSLLRSDPRRVQFNIISGT", "down_seq": "MACPHISGIAALIKSVHGDW", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of protease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q84WS0", "url": "https://www.uniprot.org/uniprotkb/Q84WS0" }, { "database": "PubMed", "id": "18643977", "url": "https://glygen.org/publication/PubMed/18643977" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "657", "end_pos": "657" }, { "start_pos": "747", "end_pos": "747" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "552", "end_pos": "552" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84WU8-1.292.292", "start_pos": 292, "end_pos": 292, "uniprot_canonical_ac": "Q84WU8-1", "length": 809, "uniprot_id": "FTSH3_ARATH", "protein_name": "ATP-dependent zinc metalloprotease FTSH 3, mitochondrial", "refseq_ac": "NP_850129", "refseq_name": "FTSH protease 3", "gene_name": "FTSH3", "gene_names_uniprotkb": "FTSH3; T9I4.16", "gene_names_refseq": "FTSH protease 3; T9I4.16; T9I4_16; ftsh3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WU8", "url": "https://www.uniprot.org/uniprotkb/Q84WU8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLGTLIYGARRMQGGLGVGG", "down_seq": "GGKNGRGIFNIGKATITRAD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr292", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "292", "end_pos": "292" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GRN0-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q8GRN0-1", "length": 222, "uniprot_id": "FLZ13_ARATH", "protein_name": "FCS-Like Zinc finger 13", "refseq_ac": "NP_565095", "refseq_name": "cyclin-dependent kinase, putative (DUF581)", "gene_name": "FLZ13", "gene_names_uniprotkb": "FLZ13; DUF581-5; F25A4.9; F9E10.21", "gene_names_refseq": "F25A4.9; F25A4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GRN0", "url": "https://www.uniprot.org/uniprotkb/Q8GRN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GRN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GRN0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GRN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GRN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MILSKRPHLMIRKL", "down_seq": "EMLVPRSRSAAIKPEEYTAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GRN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GRN0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q8GRN0-1.35.35", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GRN0-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "Q8GRN0-1", "length": 222, "uniprot_id": "FLZ13_ARATH", "protein_name": "FCS-Like Zinc finger 13", "refseq_ac": "NP_565095", "refseq_name": "cyclin-dependent kinase, putative (DUF581)", "gene_name": "FLZ13", "gene_names_uniprotkb": "FLZ13; DUF581-5; F25A4.9; F9E10.21", "gene_names_refseq": "F25A4.9; F25A4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GRN0", "url": "https://www.uniprot.org/uniprotkb/Q8GRN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GRN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GRN0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CSAECRSVQIMNDERQEQCK", "down_seq": "QVSRNADVLSSPYAAGQRLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GRN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GRN0" } ], "site_lbl": "Thr196" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GRN0-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "Q8GRN0-1", "length": 222, "uniprot_id": "FLZ13_ARATH", "protein_name": "FCS-Like Zinc finger 13", "refseq_ac": "NP_565095", "refseq_name": "cyclin-dependent kinase, putative (DUF581)", "gene_name": "FLZ13", "gene_names_uniprotkb": "FLZ13; DUF581-5; F25A4.9; F9E10.21", "gene_names_refseq": "F25A4.9; F25A4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GRN0", "url": "https://www.uniprot.org/uniprotkb/Q8GRN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GRN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GRN0" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8GRN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GRN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEMLVPRSRSAAIKPEEYTA", "down_seq": "PRSPLDLNFPSPVHSKRFGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GRN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GRN0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser35" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8GRN0-1.15.15", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSJ1-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q8GSJ1-1", "length": 413, "uniprot_id": "HIS1B_ARATH", "protein_name": "ATP phosphoribosyltransferase 2, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "HISN1B", "gene_names_uniprotkb": "HISN1B; F21M12.39", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSJ1", "url": "https://www.uniprot.org/uniprotkb/Q8GSJ1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GSJ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSJ1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8GSJ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSJ1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVSPVTYIFHEETPRWSQLL", "down_seq": "NLGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSJ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSJ1" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "409", "end_pos": "409" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUH1-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "Q8GUH1-1", "length": 834, "uniprot_id": "PUB33_ARATH", "protein_name": "U-box domain-containing protein 33", "refseq_ac": "NP_001324111", "refseq_name": "U-box domain-containing protein kinase family protein", "gene_name": "PUB33", "gene_names_uniprotkb": "PUB33; F4I18.11", "gene_names_refseq": "F4I18.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUH1", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSPIPAMGERAGSMRFHGIG", "down_seq": "PGSRSSRSGIMDEPVSRLID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser24" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "24", "end_pos": "24" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GUH1-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GUH1-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GUH1-1.32.32", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUH1-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q8GUH1-1", "length": 834, "uniprot_id": "PUB33_ARATH", "protein_name": "U-box domain-containing protein 33", "refseq_ac": "NP_001324111", "refseq_name": "U-box domain-containing protein kinase family protein", "gene_name": "PUB33", "gene_names_uniprotkb": "PUB33; F4I18.11", "gene_names_refseq": "F4I18.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUH1", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AMGERAGSMRFHGIGSPGSR", "down_seq": "SRSGIMDEPVSRLIDEKIFV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "24", "end_pos": "24" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8GUH1-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GUH1-1.32.32", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUH1-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "Q8GUH1-1", "length": 834, "uniprot_id": "PUB33_ARATH", "protein_name": "U-box domain-containing protein 33", "refseq_ac": "NP_001324111", "refseq_name": "U-box domain-containing protein kinase family protein", "gene_name": "PUB33", "gene_names_uniprotkb": "PUB33; F4I18.11", "gene_names_refseq": "F4I18.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUH1", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERAGSMRFHGIGSPGSRSSR", "down_seq": "GIMDEPVSRLIDEKIFVAVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "24", "end_pos": "24" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8GUH1-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GUH1-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUH1-1.404.404", "start_pos": 404, "end_pos": 404, "uniprot_canonical_ac": "Q8GUH1-1", "length": 834, "uniprot_id": "PUB33_ARATH", "protein_name": "U-box domain-containing protein 33", "refseq_ac": "NP_001324111", "refseq_name": "U-box domain-containing protein kinase family protein", "gene_name": "PUB33", "gene_names_uniprotkb": "PUB33; F4I18.11", "gene_names_refseq": "F4I18.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUH1", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EQEVIMEELQSAMAQKAMLE", "down_seq": "QIAKSDGTMEKLNQKLDIAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "site_lbl": "Ser404" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "24", "end_pos": "24" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q8GUH1-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GUH1-1.412.412", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GUH1-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q8GUH1-1", "length": 834, "uniprot_id": "PUB33_ARATH", "protein_name": "U-box domain-containing protein 33", "refseq_ac": "NP_001324111", "refseq_name": "U-box domain-containing protein kinase family protein", "gene_name": "PUB33", "gene_names_uniprotkb": "PUB33; F4I18.11", "gene_names_refseq": "F4I18.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUH1", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEELQSAMAQKAMLESQIAK", "down_seq": "DGTMEKLNQKLDIAVKLLQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "24", "end_pos": "24" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8GUH1-1.404.404", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GUH1-1.412.412", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GUH1-1.412.412", "start_pos": 412, "end_pos": 412, "uniprot_canonical_ac": "Q8GUH1-1", "length": 834, "uniprot_id": "PUB33_ARATH", "protein_name": "U-box domain-containing protein 33", "refseq_ac": "NP_001324111", "refseq_name": "U-box domain-containing protein kinase family protein", "gene_name": "PUB33", "gene_names_uniprotkb": "PUB33; F4I18.11", "gene_names_refseq": "F4I18.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUH1", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LQSAMAQKAMLESQIAKSDG", "down_seq": "MEKLNQKLDIAVKLLQKLRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "site_lbl": "Thr412" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "24", "end_pos": "24" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8GUH1-1.404.404", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GUH1-1.409.409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GUH1-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "Q8GUH1-1", "length": 834, "uniprot_id": "PUB33_ARATH", "protein_name": "U-box domain-containing protein 33", "refseq_ac": "NP_001324111", "refseq_name": "U-box domain-containing protein kinase family protein", "gene_name": "PUB33", "gene_names_uniprotkb": "PUB33; F4I18.11", "gene_names_refseq": "F4I18.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUH1", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MALV", "down_seq": "PIPAMGERAGSMRFHGIGSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "24", "end_pos": "24" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q8GUH1-1.24.24", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUH1-1.752.752", "start_pos": 752, "end_pos": 752, "uniprot_canonical_ac": "Q8GUH1-1", "length": 834, "uniprot_id": "PUB33_ARATH", "protein_name": "U-box domain-containing protein 33", "refseq_ac": "NP_001324111", "refseq_name": "U-box domain-containing protein kinase family protein", "gene_name": "PUB33", "gene_names_uniprotkb": "PUB33; F4I18.11", "gene_names_refseq": "F4I18.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUH1", "url": "https://www.uniprot.org/uniprotkb/Q8GUH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGTEVWRVLEPMRASSGGSS", "down_seq": "FHLGRNEHRIAPPYFICPIF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUH1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser752" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "24", "end_pos": "24" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUM3-1.17.17", "start_pos": 17, "end_pos": 17, "uniprot_canonical_ac": "Q8GUM3-1", "length": 480, "uniprot_id": "AAP5_ARATH", "protein_name": "Amino acid permease 5", "refseq_ac": "NP_175076", "refseq_name": "amino acid permease 5", "gene_name": "AAP5", "gene_names_uniprotkb": "AAP5; T7O23.19", "gene_names_refseq": "AAP5; T7O23.19; T7O23_19; amino acid permease 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUM3", "url": "https://www.uniprot.org/uniprotkb/Q8GUM3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUM3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUM3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GUM3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUM3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MVVQNVQDLDVLPKHS", "down_seq": "DSFDDDGRPKRTGTVWTASA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUM3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUM3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser17" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "17", "end_pos": "17" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GVE5-1.185.185", "start_pos": 185, "end_pos": 185, "uniprot_canonical_ac": "Q8GVE5-1", "length": 394, "uniprot_id": "TLP2_ARATH", "protein_name": "Tubby-like F-box protein 2", "refseq_ac": "NP_001031369", "refseq_name": "tubby like protein 2", "gene_name": "TULP2", "gene_names_uniprotkb": "TULP2; T30D6.21; TLP2", "gene_names_refseq": "AtTLP2; T30D6.21; T30D6_21; TLP2; tubby like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GVE5", "url": "https://www.uniprot.org/uniprotkb/Q8GVE5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GVE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GVE5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8GVE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GVE5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISLSAKNFSRSSSTYVGKLR", "down_seq": "GFLGTKFTIYDNQTASSTAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GVE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GVE5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser185" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "185", "end_pos": "185" }, { "start_pos": "195", "end_pos": "195" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q8GVE5-1.195.195", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GVE5-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "Q8GVE5-1", "length": 394, "uniprot_id": "TLP2_ARATH", "protein_name": "Tubby-like F-box protein 2", "refseq_ac": "NP_001031369", "refseq_name": "tubby like protein 2", "gene_name": "TULP2", "gene_names_uniprotkb": "TULP2; T30D6.21; TLP2", "gene_names_refseq": "AtTLP2; T30D6.21; T30D6_21; TLP2; tubby like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GVE5", "url": "https://www.uniprot.org/uniprotkb/Q8GVE5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GVE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GVE5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8GVE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GVE5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SSSTYVGKLRSGFLGTKFTI", "down_seq": "DNQTASSTAQAQPNRRLHPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GVE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GVE5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr195" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "185", "end_pos": "185" }, { "start_pos": "195", "end_pos": "195" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8GVE5-1.185.185", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GW72-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "Q8GW72-1", "length": 506, "uniprot_id": "FUCO1_ARATH", "protein_name": "Alpha-L-fucosidase 1", "refseq_ac": "NP_180377", "refseq_name": "alpha-L-fucosidase 1", "gene_name": "FUC1", "gene_names_uniprotkb": "FUC1; F24D13.11", "gene_names_refseq": "ATFUC1; F24D13.11; F24D13_11; FUC1; alpha-L-fucosidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSQITLFFFFFSILSLSQIS", "down_seq": "SSSLLKPHPCPILPLPSSQQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn22", "evidence": [ { "id": "Q8GW72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GW72#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "82", "end_pos": "82" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GW72-1.248.248", "start_pos": 248, "end_pos": 248, "uniprot_canonical_ac": "Q8GW72-1", "length": 506, "uniprot_id": "FUCO1_ARATH", "protein_name": "Alpha-L-fucosidase 1", "refseq_ac": "NP_180377", "refseq_name": "alpha-L-fucosidase 1", "gene_name": "FUC1", "gene_names_uniprotkb": "FUC1; F24D13.11", "gene_names_refseq": "ATFUC1; F24D13.11; F24D13_11; FUC1; alpha-L-fucosidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DVRWIGDEAGLAGSTCWSLF", "down_seq": "RTNAKIGDTEPSYSQEGDGY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn248", "evidence": [ { "id": "Q8GW72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GW72#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "82", "end_pos": "82" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GW72-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q8GW72-1", "length": 506, "uniprot_id": "FUCO1_ARATH", "protein_name": "Alpha-L-fucosidase 1", "refseq_ac": "NP_180377", "refseq_name": "alpha-L-fucosidase 1", "gene_name": "FUC1", "gene_names_uniprotkb": "FUC1; F24D13.11", "gene_names_refseq": "ATFUC1; F24D13.11; F24D13_11; FUC1; alpha-L-fucosidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LDIYYNSVGRNCLFLLNVPP", "down_seq": "SSGLISEQDIKVLEEFSEMK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn320", "evidence": [ { "id": "Q8GW72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GW72#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "82", "end_pos": "82" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q8GW72-1.326.326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GW72-1.355.355", "start_pos": 355, "end_pos": 355, "uniprot_canonical_ac": "Q8GW72-1", "length": 506, "uniprot_id": "FUCO1_ARATH", "protein_name": "Alpha-L-fucosidase 1", "refseq_ac": "NP_180377", "refseq_name": "alpha-L-fucosidase 1", "gene_name": "FUC1", "gene_names_uniprotkb": "FUC1; F24D13.11", "gene_names_refseq": "ATFUC1; F24D13.11; F24D13_11; FUC1; alpha-L-fucosidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EFSEMKNSIFSNNLARKAFV", "down_seq": "SSSIRGDQSSQFGPKNVLEE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn355", "evidence": [ { "id": "Q8GW72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GW72#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "82", "end_pos": "82" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GW72-1.487.487", "start_pos": 487, "end_pos": 487, "uniprot_canonical_ac": "Q8GW72-1", "length": 506, "uniprot_id": "FUCO1_ARATH", "protein_name": "Alpha-L-fucosidase 1", "refseq_ac": "NP_180377", "refseq_name": "alpha-L-fucosidase 1", "gene_name": "FUC1", "gene_names_uniprotkb": "FUC1; F24D13.11", "gene_names_refseq": "ATFUC1; F24D13.11; F24D13_11; FUC1; alpha-L-fucosidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TDPLISYLGLYMDKFSGSSR", "down_seq": "TTKITITRTLKEEQQLHDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn487", "evidence": [ { "id": "Q8GW72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GW72#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "82", "end_pos": "82" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GW72-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "Q8GW72-1", "length": 506, "uniprot_id": "FUCO1_ARATH", "protein_name": "Alpha-L-fucosidase 1", "refseq_ac": "NP_180377", "refseq_name": "alpha-L-fucosidase 1", "gene_name": "FUC1", "gene_names_uniprotkb": "FUC1; F24D13.11", "gene_names_refseq": "ATFUC1; F24D13.11; F24D13_11; FUC1; alpha-L-fucosidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TDSEWGTGKANPSIFNPTHL", "down_seq": "ASQWVQIAKDSGFSRVILTA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn82", "evidence": [ { "id": "Q8GW72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GW72#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "82", "end_pos": "82" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GW72-1.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "Q8GW72-1", "length": 506, "uniprot_id": "FUCO1_ARATH", "protein_name": "Alpha-L-fucosidase 1", "refseq_ac": "NP_180377", "refseq_name": "alpha-L-fucosidase 1", "gene_name": "FUC1", "gene_names_uniprotkb": "FUC1; F24D13.11", "gene_names_refseq": "ATFUC1; F24D13.11; F24D13_11; FUC1; alpha-L-fucosidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GW72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GW72" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8GW72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GW72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GKTLEYNEFYLSQMTELLTK", "down_seq": "GEIKEVWLDGAKGDGEKDME", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GW72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GW72" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Tyr182" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "82", "end_pos": "82" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GW72-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "Q8GW72-1", "length": 506, "uniprot_id": "FUCO1_ARATH", "protein_name": "Alpha-L-fucosidase 1", "refseq_ac": "NP_180377", "refseq_name": "alpha-L-fucosidase 1", "gene_name": "FUC1", "gene_names_uniprotkb": "FUC1; F24D13.11", "gene_names_refseq": "ATFUC1; F24D13.11; F24D13_11; FUC1; alpha-L-fucosidase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW72", "url": "https://www.uniprot.org/uniprotkb/Q8GW72" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GW72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GW72" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8GW72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GW72", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVGRNCLFLLNVPPNSSGLI", "down_seq": "EQDIKVLEEFSEMKNSIFSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GW72", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GW72" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser326" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "82", "end_pos": "82" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8GW72-1.320.320", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GWJ6-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "Q8GWJ6-1", "length": 119, "uniprot_id": "MUB6_ARATH", "protein_name": "Membrane-anchored ubiquitin-fold protein 6", "refseq_ac": "NP_173624", "refseq_name": "membrane-anchored ubiquitin-fold protein 6 precursor", "gene_name": "MUB6", "gene_names_uniprotkb": "MUB6; F2E2.12; F2E2_11", "gene_names_refseq": "F2E2.12; F2E2_12; MUB6; membrane-anchored ubiquitin-fold protein 6 precursor", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWJ6", "url": "https://www.uniprot.org/uniprotkb/Q8GWJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "MUBs, a family of ubiquitin-fold proteins that are plasma membrane-anchored by prenylation.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Downes BP, Saracco SA, Lee SS, Crowell DN, Vierstra RD", "evidence": [ { "database": "UniProtKB", "id": "Q8GWJ6", "url": "https://www.uniprot.org/uniprotkb/Q8GWJ6" } ], "reference": [ { "type": "PubMed", "id": "16831869", "url": "https://glygen.org/publication/PubMed/16831869" } ] } ], "crossref": [ { "id": "Q8GWJ6", "url": "https://www.uniprot.org/uniprotkb/Q8GWJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16831869", "url": "https://glygen.org/publication/PubMed/16831869", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "TLDKKSEKLQNDPPMKNRCV", "down_seq": "TIL", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of prenylation and membrane localization.", "evidence": [ { "database": "UniProtKB", "id": "Q8GWJ6", "url": "https://www.uniprot.org/uniprotkb/Q8GWJ6" }, { "database": "PubMed", "id": "16831869", "url": "https://glygen.org/publication/PubMed/16831869" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "116", "end_pos": "116" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GWQ2-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q8GWQ2-1", "length": 281, "uniprot_id": "AHL20_ARATH", "protein_name": "AT-hook motif nuclear-localized protein 20", "refseq_ac": "NP_567432", "refseq_name": "AT-hook motif nuclear-localized protein 20", "gene_name": "AHL20", "gene_names_uniprotkb": "AHL20; FCAALL.196; RNH1", "gene_names_refseq": "AHL20; AT-hook motif nuclear-localized protein 20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWQ2", "url": "https://www.uniprot.org/uniprotkb/Q8GWQ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GWQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWQ2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q8GWQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWQ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TFSNATYERLPMEEEEDGGG", "down_seq": "RQIHGGGDSPPRIGSNLPDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GWQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWQ2" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser225" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q8GWQ2-1.234.234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GWQ2-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "Q8GWQ2-1", "length": 281, "uniprot_id": "AHL20_ARATH", "protein_name": "AT-hook motif nuclear-localized protein 20", "refseq_ac": "NP_567432", "refseq_name": "AT-hook motif nuclear-localized protein 20", "gene_name": "AHL20", "gene_names_uniprotkb": "AHL20; FCAALL.196; RNH1", "gene_names_refseq": "AHL20; AT-hook motif nuclear-localized protein 20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWQ2", "url": "https://www.uniprot.org/uniprotkb/Q8GWQ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GWQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWQ2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q8GWQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWQ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPMEEEEDGGGSRQIHGGGD", "down_seq": "PPRIGSNLPDLSGMAGPGYN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GWQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWQ2" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser234" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8GWQ2-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GWZ6-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "Q8GWZ6-1", "length": 275, "uniprot_id": "SRR1_ARATH", "protein_name": "Protein SENSITIVITY TO RED LIGHT REDUCED 1", "refseq_ac": "NP_200764", "refseq_name": "sensitivity to red light reduced protein (SRR1)", "gene_name": "SRR1", "gene_names_uniprotkb": "SRR1; F2O15.220; F2O15.23", "gene_names_refseq": "F2O15.23; F2O15_23; SENSITIVITY TO RED LIGHT REDUCED 1; SRR1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GWZ6", "url": "https://www.uniprot.org/uniprotkb/Q8GWZ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GWZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWZ6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GWZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWZ6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q8GWZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWZ6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISLKKIESSSFYTAFLEQLK", "down_seq": "PEVSNQIRLVLGSETQLQMV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GWZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GWZ6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser84" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GX23-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PSPQTPENPSPPAPEGSTPV", "down_seq": "PPAPPQTPSNQSPERPTPPS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr102", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q8GX23-1.119.119", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TPVTPPAPPQTPSNQSPERP", "down_seq": "PPSPGANDDRNRTNGGNNNR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr119", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q8GX23-1.102.102", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8GX23-1.130.130", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSNQSPERPTPPSPGANDDR", "down_seq": "RTNGGNNNRDGSTPSPPSSG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q8GX23-1.119.119", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8GX23-1.143.143", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PGANDDRNRTNGGNNNRDGS", "down_seq": "PSPPSSGNRTSGDGGSPSPP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr143", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8GX23-1.130.130", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GX23-1.151.151", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RTNGGNNNRDGSTPSPPSSG", "down_seq": "RTSGDGGSPSPPRSISPPQN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn151", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8GX23-1.143.143", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ADSPVDSSPAPETSNGTPPS", "down_seq": "GTSPSNESSPPTPPSSPPPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn22", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q8GX23-1.28.28", "categories": [ "glycosylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8GX23-1.34.34", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSPAPETSNGTPPSNGTSPS", "down_seq": "ESSPPTPPSSPPPSSISAPP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn28", "evidence": [ { "id": "Q8GX23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX23#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8GX23-1.22.22", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GX23-1.34.34", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TSNGTPPSNGTSPSNESSPP", "down_seq": "PPSSPPPSSISAPPPDISAS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr34", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8GX23-1.22.22", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GX23-1.28.28", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GRTAIPSPQAATLGHNQSTF", "down_seq": "YDELSIATEGFAQSNLLGQG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "site_lbl": "Thr301" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.385.385", "start_pos": 385, "end_pos": 385, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRHLVSLVGYCISGGQRLLV", "down_seq": "EFIPNNTLEFHLHGKGRPVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "site_lbl": "Tyr385" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.469.469", "start_pos": 469, "end_pos": 469, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETKVADFGLAKLSQDNYTHV", "down_seq": "TRVMGTFGYLAPEYASSGKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "site_lbl": "Ser469" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8GX23-1.470.470", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GX23-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8GX23-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.470.470", "start_pos": 470, "end_pos": 470, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TKVADFGLAKLSQDNYTHVS", "down_seq": "RVMGTFGYLAPEYASSGKLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "site_lbl": "Thr470" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8GX23-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GX23-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8GX23-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.475.475", "start_pos": 475, "end_pos": 475, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGLAKLSQDNYTHVSTRVMG", "down_seq": "FGYLAPEYASSGKLSDKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "site_lbl": "Thr475" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8GX23-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GX23-1.470.470", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GX23-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX23-1.483.483", "start_pos": 483, "end_pos": 483, "uniprot_canonical_ac": "Q8GX23-1", "length": 670, "uniprot_id": "PERK5_ARATH", "protein_name": "Proline-rich receptor-like protein kinase PERK5", "refseq_ac": "NP_001320136", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PERK5", "gene_names_uniprotkb": "PERK5; T4L20.20", "gene_names_refseq": "AtPERK5; PERK5; T4L20.20; T4L20_20; proline-rich extensin-like receptor kinase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DNYTHVSTRVMGTFGYLAPE", "down_seq": "ASSGKLSDKSDVFSFGVMLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8GX23", "url": "https://www.uniprot.org/uniprotkb/Q8GX23" } ], "site_lbl": "Tyr483" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "34", "end_pos": "34" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "483", "end_pos": "483" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8GX23-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q8GX23-1.470.470", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8GX23-1.475.475", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX86-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "Q8GX86-1", "length": 669, "uniprot_id": "PME21_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 21", "refseq_ac": "NP_187212", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME21", "gene_names_uniprotkb": "PME21; ARATH21; F18C1.12", "gene_names_refseq": "F18C1.12; F18C1_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DGSGQYKTINEALQFVPKKR", "down_seq": "TTFVVHIKAGLYKEYVQVNK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn281", "evidence": [ { "id": "Q8GX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX86#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q8GX86-1.300.300", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX86-1.300.300", "start_pos": 300, "end_pos": 300, "uniprot_canonical_ac": "Q8GX86-1", "length": 669, "uniprot_id": "PME21_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 21", "refseq_ac": "NP_187212", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME21", "gene_names_uniprotkb": "PME21; ARATH21; F18C1.12", "gene_names_refseq": "F18C1.12; F18C1_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RNTTFVVHIKAGLYKEYVQV", "down_seq": "KTMSHLVFIGDGPDKTIISG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn300", "evidence": [ { "id": "Q8GX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX86#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GX86-1.281.281", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX86-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q8GX86-1", "length": 669, "uniprot_id": "PME21_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 21", "refseq_ac": "NP_187212", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME21", "gene_names_uniprotkb": "PME21; ARATH21; F18C1.12", "gene_names_refseq": "F18C1.12; F18C1_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RRYIVITISSVLLISMVVAV", "down_seq": "VGVSLNKHDGDSKGKAEVNA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr33", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q8GX86-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX86-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "Q8GX86-1", "length": 669, "uniprot_id": "PME21_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 21", "refseq_ac": "NP_187212", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME21", "gene_names_uniprotkb": "PME21; ARATH21; F18C1.12", "gene_names_refseq": "F18C1.12; F18C1_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DCTISGTIDFLFGDAAAVFQ", "down_seq": "CTLLVRKPLPNQACPITAHG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn416", "evidence": [ { "id": "Q8GX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX86#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX86-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q8GX86-1", "length": 669, "uniprot_id": "PME21_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 21", "refseq_ac": "NP_187212", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME21", "gene_names_uniprotkb": "PME21; ARATH21; F18C1.12", "gene_names_refseq": "F18C1.12; F18C1_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VTVGVSLNKHDGDSKGKAEV", "down_seq": "ASVKAVKDVCAPTDYRKTCE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn52", "evidence": [ { "id": "Q8GX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX86#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GX86-1.33.33", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX86-1.601.601", "start_pos": 601, "end_pos": 601, "uniprot_canonical_ac": "Q8GX86-1", "length": 669, "uniprot_id": "PME21_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 21", "refseq_ac": "NP_187212", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME21", "gene_names_uniprotkb": "PME21; ARATH21; F18C1.12", "gene_names_refseq": "F18C1.12; F18C1_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AAAPGFSTFTDTSGADSIAP", "down_seq": "ASPAASPESSISMAYTGTAS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr601", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX86-1.81.81", "start_pos": 81, "end_pos": 81, "uniprot_canonical_ac": "Q8GX86-1", "length": 669, "uniprot_id": "PME21_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 21", "refseq_ac": "NP_187212", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME21", "gene_names_uniprotkb": "PME21; ARATH21; F18C1.12", "gene_names_refseq": "F18C1.12; F18C1_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VCAPTDYRKTCEDTLIKNGK", "down_seq": "TTDPMELVKTAFNVTMKQIT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn81", "evidence": [ { "id": "Q8GX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX86#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q8GX86-1.94.94", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GX86-1.94.94", "start_pos": 94, "end_pos": 94, "uniprot_canonical_ac": "Q8GX86-1", "length": 669, "uniprot_id": "PME21_ARATH", "protein_name": "Probable pectinesterase/pectinesterase inhibitor 21", "refseq_ac": "NP_187212", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME21", "gene_names_uniprotkb": "PME21; ARATH21; F18C1.12", "gene_names_refseq": "F18C1.12; F18C1_12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GX86", "url": "https://www.uniprot.org/uniprotkb/Q8GX86", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TLIKNGKNTTDPMELVKTAF", "down_seq": "VTMKQITDAAKKSQTIMELQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn94", "evidence": [ { "id": "Q8GX86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GX86#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "281", "end_pos": "281" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8GX86-1.81.81", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXN2-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "Q8GXN2-1", "length": 589, "uniprot_id": "PTR47_ARATH", "protein_name": "Protein NRT1/ PTR FAMILY 7.2", "refseq_ac": "NP_193899", "refseq_name": "NITRATE TRANSPORTER 1.8", "gene_name": "NPF7.2", "gene_names_uniprotkb": "NPF7.2; F17L22.140; NRT1.8", "gene_names_refseq": "AtNPF7.2; F17L22.140; F17L22_140; NITRATE TRANSPORTER 1.8; NPF7.2; NRT1.8; NRT1/ PTR family 7.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXN2", "url": "https://www.uniprot.org/uniprotkb/Q8GXN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXN2", "url": "https://www.uniprot.org/uniprotkb/Q8GXN2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VYIFSLLGAFLSDSYWGRYK", "down_seq": "CAIFQASFVAGLMMLSLSTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXN2", "url": "https://www.uniprot.org/uniprotkb/Q8GXN2" } ], "site_lbl": "Thr102" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXP1-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "Q8GXP1-1", "length": 804, "uniprot_id": "MAG2L_ARATH", "protein_name": "RINT1-like protein MAG2L", "refseq_ac": "NP_172316", "refseq_name": "RINT-1 / TIP-1 family", "gene_name": "MAG2L", "gene_names_uniprotkb": "MAG2L; T27G7.8", "gene_names_refseq": "T27G7.8; T27G7_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXP1", "url": "https://www.uniprot.org/uniprotkb/Q8GXP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXP1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXP1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVSLEDLRLNLESLLCLPTD", "down_seq": "VGKQTNWELQQVVEELCRIQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXP1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXP1" } ], "site_lbl": "Ser102" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXP1-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "Q8GXP1-1", "length": 804, "uniprot_id": "MAG2L_ARATH", "protein_name": "RINT1-like protein MAG2L", "refseq_ac": "NP_172316", "refseq_name": "RINT-1 / TIP-1 family", "gene_name": "MAG2L", "gene_names_uniprotkb": "MAG2L; T27G7.8", "gene_names_refseq": "T27G7.8; T27G7_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXP1", "url": "https://www.uniprot.org/uniprotkb/Q8GXP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXP1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXP1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KEKRKKLNMTKETDNDGLWA", "down_seq": "DELVKPVASRMEYHFLKWAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXP1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXP1" } ], "site_lbl": "Thr295" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXZ3-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HPNLVKLIGYCCEDDHRLLV", "down_seq": "EFMLRGSLENHLFRKTTAPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "site_lbl": "Tyr149" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXZ3-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EFMLRGSLENHLFRKTTAPL", "down_seq": "WSRRMMIALGAAKGLAFLHN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser170" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXZ3-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGLAFLHNAERPVIYRDFKT", "down_seq": "NILLDSDYTAKLSDFGLAKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "site_lbl": "Ser203" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXZ3-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLSDFGLAKAGPQGDETHV", "down_seq": "TRVMGTYGYAAPEYVMTGHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" }, { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser233" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8GXZ3-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GXZ3-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8GXZ3-1.247.247", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXZ3-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLSDFGLAKAGPQGDETHVS", "down_seq": "RVMGTYGYAAPEYVMTGHLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "site_lbl": "Thr234" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8GXZ3-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GXZ3-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8GXZ3-1.247.247", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXZ3-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLAKAGPQGDETHVSTRVMG", "down_seq": "YGYAAPEYVMTGHLTARSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "site_lbl": "Thr239" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8GXZ3-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GXZ3-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GXZ3-1.247.247", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXZ3-1.247.247", "start_pos": 247, "end_pos": 247, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDETHVSTRVMGTYGYAAPE", "down_seq": "VMTGHLTARSDVYSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "site_lbl": "Tyr247" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8GXZ3-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q8GXZ3-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8GXZ3-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXZ3-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RDEAAVFTPQAQAQQLQKKH", "down_seq": "RSVSDLSDPSTPRFRDDSRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser27" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8GXZ3-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8GXZ3-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GXZ3-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8GXZ3-1.37.37", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8GXZ3-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXZ3-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" }, { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAAVFTPQAQAQQLQKKHSR", "down_seq": "VSDLSDPSTPRFRDDSRTPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GXZ3-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GXZ3-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GXZ3-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GXZ3-1.37.37", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GXZ3-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXZ3-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" }, { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVFTPQAQAQQLQKKHSRSV", "down_seq": "DLSDPSTPRFRDDSRTPISY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser31" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8GXZ3-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GXZ3-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GXZ3-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GXZ3-1.37.37", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GXZ3-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXZ3-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" }, { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPQAQAQQLQKKHSRSVSDL", "down_seq": "DPSTPRFRDDSRTPISYAQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser34" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GXZ3-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GXZ3-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GXZ3-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GXZ3-1.37.37", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8GXZ3-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXZ3-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" }, { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AQAQQLQKKHSRSVSDLSDP", "down_seq": "TPRFRDDSRTPISYAQVIPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser37" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8GXZ3-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8GXZ3-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GXZ3-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GXZ3-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GXZ3-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXZ3-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" }, { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QAQQLQKKHSRSVSDLSDPS", "down_seq": "PRFRDDSRTPISYAQVIPFT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr38" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q8GXZ3-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8GXZ3-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8GXZ3-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8GXZ3-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GXZ3-1.37.37", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8GXZ3-1.58.58", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXZ3-1.58.58", "start_pos": 58, "end_pos": 58, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TPRFRDDSRTPISYAQVIPF", "down_seq": "LFELETITKSFRPDYILGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "site_lbl": "Thr58" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8GXZ3-1.38.38", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GXZ3-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "Q8GXZ3-1", "length": 410, "uniprot_id": "PBL8_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL8", "refseq_ac": "NP_195722", "refseq_name": "Protein kinase superfamily protein", "gene_name": "PBL8", "gene_names_uniprotkb": "PBL8; F7J8.5; PIX17", "gene_names_refseq": "F7J8.5; F7J8_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXZ3", "url": "https://www.uniprot.org/uniprotkb/Q8GXZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KSFRPDYILGEGGFGTVYKG", "down_seq": "IDDNLRVGLKSLPVAVKVLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GXZ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GXZ3" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Tyr87" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.3191.3191", "start_pos": 3191, "end_pos": 3191, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DHTAAASNINPGDHVLGISP", "down_seq": "SSLSPGTQRLLPLIEAFFVL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3191", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GY23-1.3648.3648", "start_pos": 3648, "end_pos": 3648, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "UPL1 and 2, two 405 kDa ubiquitin-protein ligases from Arabidopsis thaliana related to the HECT-domain protein family.", "journal": "The Plant journal : for cell and molecular biology", "date": "1999-10", "authors": "Bates P W, Vierstra R D", "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "10571878", "url": "https://glygen.org/publication/PubMed/10571878" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10571878", "url": "https://glygen.org/publication/PubMed/10571878", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "QRLQIHKAYGAPERLPSAHT", "down_seq": "FNQLDLPEYQSKEQLQERLL", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Abolishes ability to conjugate ubiquitin in vitro.", "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" }, { "database": "PubMed", "id": "10571878", "url": "https://glygen.org/publication/PubMed/10571878" } ] }, { "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes ability to conjugate ubiquitin in vitro.", "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" }, { "database": "PubMed", "id": "10571878", "url": "https://glygen.org/publication/PubMed/10571878" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.1514.1514", "start_pos": 1514, "end_pos": 1514, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EYVEGNQGGSLVPSDSPQDS", "down_seq": "AALKDALSSDVAKGESNQAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Thr1514" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q8GY23-1.1522.1522", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.1522.1522", "start_pos": 1522, "end_pos": 1522, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSLVPSDSPQDSTAALKDAL", "down_seq": "SDVAKGESNQALELIFGKST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1522" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8GY23-1.1514.1514", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.1701.1701", "start_pos": 1701, "end_pos": 1701, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESSGGRDFVILSKEKEKPKV", "down_seq": "GSEHGFSLNEPLGISENKLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1701" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8GY23-1.1703.1703", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.1703.1703", "start_pos": 1703, "end_pos": 1703, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGGRDFVILSKEKEKPKVSG", "down_seq": "EHGFSLNEPLGISENKLHDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1703" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GY23-1.1701.1701", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.2082.2082", "start_pos": 2082, "end_pos": 2082, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGNGQEQAQVSSQSAGERGS", "down_seq": "QTQAMPQDMRIEGDETILPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser2082" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.2265.2265", "start_pos": 2265, "end_pos": 2265, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPLGFERRRQTGRSSLDRSG", "down_seq": "EVHGFQHPLFSRPSQTGNTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser2265" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.2295.2295", "start_pos": 2295, "end_pos": 2295, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSRPSQTGNTASVSASAGSI", "down_seq": "RHSEAGSYDVAQFYMFDTPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser2295" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.2598.2598", "start_pos": 2598, "end_pos": 2598, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" }, { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" }, { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELSSMEATENVRNDEQVEEG", "down_seq": "LDGRAPEVNAIDPTFLEALP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser2598" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.2740.2740", "start_pos": 2740, "end_pos": 2740, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AQMLRDRAMSHYQARSSVFG", "down_seq": "SHRLNNRRNGLGYNRLTGMD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser2740" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.2773.2773", "start_pos": 2773, "end_pos": 2773, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YNRLTGMDRGVGVTIGQRAV", "down_seq": "SSADGLKVKEIEGDPLVNAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser2773" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.3340.3340", "start_pos": 3340, "end_pos": 3340, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RISVRRAYVLEDSYNQLRMR", "down_seq": "PQDLKGRLNVQFQGEEGIDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser3340" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.844.844", "start_pos": 844, "end_pos": 844, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRSLSCLEGMLSLSNFLLKG", "down_seq": "ASVISELSAADADVLKELGI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser844" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8GY23-1.846.846", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.846.846", "start_pos": 846, "end_pos": 846, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLSCLEGMLSLSNFLLKGSA", "down_seq": "VISELSAADADVLKELGITY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser846" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GY23-1.844.844", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.906.906", "start_pos": 906, "end_pos": 906, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVDRGSDNSVSASSSTAERE", "down_seq": "DEDSSNALAVRYTNPVSIRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser906" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q8GY23-1.910.910", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.910.910", "start_pos": 910, "end_pos": 910, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSDNSVSASSSTAERESDED", "down_seq": "SNALAVRYTNPVSIRSSSSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser910" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8GY23-1.906.906", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q8GY23-1.928.928", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.928.928", "start_pos": 928, "end_pos": 928, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDSSNALAVRYTNPVSIRSS", "down_seq": "SQSIWGGDREFLSIVRSGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser928" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q8GY23-1.910.910", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.986.986", "start_pos": 986, "end_pos": 986, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRHLESFNFDSEIPADLPVT", "down_seq": "SSHELKKKSTEVLIAEILNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser986" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8GY23-1.987.987", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GY23-1.988.988", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.987.987", "start_pos": 987, "end_pos": 987, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHLESFNFDSEIPADLPVTS", "down_seq": "SHELKKKSTEVLIAEILNKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser987" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8GY23-1.986.986", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GY23-1.988.988", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY23-1.988.988", "start_pos": 988, "end_pos": 988, "uniprot_canonical_ac": "Q8GY23-1", "length": 3681, "uniprot_id": "UPL1_ARATH", "protein_name": "E3 ubiquitin-protein ligase UPL1", "refseq_ac": "NP_001185245", "refseq_name": "LOW protein: E3 ubiquitin ligase-like protein", "gene_name": "UPL1", "gene_names_uniprotkb": "UPL1; F14J16.14; F14J16.37", "gene_names_refseq": "F14J16.37; UPL1; ubiquitin-protein ligase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY23", "url": "https://www.uniprot.org/uniprotkb/Q8GY23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HLESFNFDSEIPADLPVTSS", "down_seq": "HELKKKSTEVLIAEILNKLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY23", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY23" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser988" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3191", "end_pos": "3191" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "3648", "end_pos": "3648" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1522", "end_pos": "1522" }, { "start_pos": "1701", "end_pos": "1701" }, { "start_pos": "1703", "end_pos": "1703" }, { "start_pos": "2082", "end_pos": "2082" }, { "start_pos": "2265", "end_pos": "2265" }, { "start_pos": "2295", "end_pos": "2295" }, { "start_pos": "2598", "end_pos": "2598" }, { "start_pos": "2740", "end_pos": "2740" }, { "start_pos": "2773", "end_pos": "2773" }, { "start_pos": "3340", "end_pos": "3340" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "906", "end_pos": "906" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "987", "end_pos": "987" }, { "start_pos": "988", "end_pos": "988" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GY23-1.986.986", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GY23-1.987.987", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY84-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "Q8GY84-1", "length": 456, "uniprot_id": "RH10_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 10", "refseq_ac": "NP_568931", "refseq_name": "DEA(D/H)-box RNA helicase family protein", "gene_name": "RH10", "gene_names_uniprotkb": "RH10; EAST2; MSL3.13; MSL3_110", "gene_names_refseq": "MSL3.110; MSL3_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY84", "url": "https://www.uniprot.org/uniprotkb/Q8GY84" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.", "journal": "Biology open", "date": "2016-07-15", "authors": "Matsumura Yoko, Ohbayashi Iwai, Takahashi Hiro, Kojima Shoko, Ishibashi Nanako, Keta Sumie, Nakagawa Ayami, Hayashi Rika, Sa\u00e9z-V\u00e1squez Julio, Echeverria Manuel, Sugiyama Munetaka, Nakamura Kenzo, Machida Chiyoko, Machida Yasunori", "evidence": [ { "database": "UniProtKB", "id": "Q8GY84", "url": "https://www.uniprot.org/uniprotkb/Q8GY84" } ], "reference": [ { "type": "PubMed", "id": "27334696", "url": "https://glygen.org/publication/PubMed/27334696" } ] } ], "crossref": [ { "id": "Q8GY84", "url": "https://www.uniprot.org/uniprotkb/Q8GY84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27334696", "url": "https://glygen.org/publication/PubMed/27334696", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YILSEMPESTSMIFTRTCDG", "down_seq": "RFLALVLRSLGFRAIPISGQ", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "In rh10-1; temperature-sensitive mutant.", "evidence": [ { "database": "UniProtKB", "id": "Q8GY84", "url": "https://www.uniprot.org/uniprotkb/Q8GY84" }, { "database": "PubMed", "id": "27334696", "url": "https://glygen.org/publication/PubMed/27334696" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "273", "end_pos": "273" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY84-1.96.96", "start_pos": 96, "end_pos": 96, "uniprot_canonical_ac": "Q8GY84-1", "length": 456, "uniprot_id": "RH10_ARATH", "protein_name": "DEAD-box ATP-dependent RNA helicase 10", "refseq_ac": "NP_568931", "refseq_name": "DEA(D/H)-box RNA helicase family protein", "gene_name": "RH10", "gene_names_uniprotkb": "RH10; EAST2; MSL3.13; MSL3_110", "gene_names_refseq": "MSL3.110; MSL3_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY84", "url": "https://www.uniprot.org/uniprotkb/Q8GY84" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GY84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY84" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q8GY84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY84", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YDSEPKKGRRPDPAFFACVL", "down_seq": "PTRELAIQIAEQFEALGADI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY84" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser96" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "273", "end_pos": "273" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GY91-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "Q8GY91-1", "length": 329, "uniprot_id": "APX6_ARATH", "protein_name": "Putative L-ascorbate peroxidase 6", "refseq_ac": "NP_194958", "refseq_name": "ascorbate peroxidase 6", "gene_name": "APX6", "gene_names_uniprotkb": "APX6; F10M6.50; F8B4.20", "gene_names_refseq": "APX6; F10M6.50; F10M6_50; ascorbate peroxidase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY91", "url": "https://www.uniprot.org/uniprotkb/Q8GY91" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SWADMISVAGSEAVSICGGP", "down_seq": "IPVVLGRLDSAQPDPEGKLP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr194", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "194", "end_pos": "194" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "313", "end_pos": "313" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GY91-1.313.313", "start_pos": 313, "end_pos": 313, "uniprot_canonical_ac": "Q8GY91-1", "length": 329, "uniprot_id": "APX6_ARATH", "protein_name": "Putative L-ascorbate peroxidase 6", "refseq_ac": "NP_194958", "refseq_name": "ascorbate peroxidase 6", "gene_name": "APX6", "gene_names_uniprotkb": "APX6; F10M6.50; F8B4.20", "gene_names_refseq": "APX6; F10M6.50; F10M6_50; ascorbate peroxidase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY91", "url": "https://www.uniprot.org/uniprotkb/Q8GY91" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GY91", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY91", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ECLRWVKRYAEDQDKFFEDF", "down_seq": "NAYIKLVNSGAKWNML", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY91", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY91" } ], "site_lbl": "Thr313" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "194", "end_pos": "194" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "313", "end_pos": "313" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8GY91-1.316.316", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GY91-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "Q8GY91-1", "length": 329, "uniprot_id": "APX6_ARATH", "protein_name": "Putative L-ascorbate peroxidase 6", "refseq_ac": "NP_194958", "refseq_name": "ascorbate peroxidase 6", "gene_name": "APX6", "gene_names_uniprotkb": "APX6; F10M6.50; F8B4.20", "gene_names_refseq": "APX6; F10M6.50; F10M6_50; ascorbate peroxidase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY91", "url": "https://www.uniprot.org/uniprotkb/Q8GY91" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GY91", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY91", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RWVKRYAEDQDKFFEDFTNA", "down_seq": "IKLVNSGAKWNML", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GY91", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GY91" } ], "site_lbl": "Tyr316" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "194", "end_pos": "194" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "313", "end_pos": "313" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8GY91-1.313.313", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYE0-1.386.386", "start_pos": 386, "end_pos": 386, "uniprot_canonical_ac": "Q8GYE0-1", "length": 398, "uniprot_id": "PHF1_ARATH", "protein_name": "SEC12-like protein 1", "refseq_ac": "NP_566961", "refseq_name": "phosphate transporter traffic facilitator1", "gene_name": "PHF1", "gene_names_uniprotkb": "PHF1; F4F15.300", "gene_names_refseq": "AtPHF1; PHF1; T25B15.3; phosphate transporter traffic facilitator1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYE0", "url": "https://www.uniprot.org/uniprotkb/Q8GYE0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LPMGKDQKRPKISLFGGSSS", "down_seq": "PSEDHSRWNLDL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr386", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYF5-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "Q8GYF5-1", "length": 622, "uniprot_id": "WAKLR_ARATH", "protein_name": "Wall-associated receptor kinase-like 21", "refseq_ac": "NP_201480", "refseq_name": "Protein kinase superfamily protein", "gene_name": "WAKL21", "gene_names_uniprotkb": "WAKL21; MUD21_3", "gene_names_refseq": "MUD21.3; MUD21_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ENLAPSKLQNIILVQGCKKQ", "down_seq": "KSSNCLIRNKFVENRLNLSK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn114", "evidence": [ { "id": "Q8GYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "618", "end_pos": "618" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q8GYF5-1.131.131", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYF5-1.131.131", "start_pos": 131, "end_pos": 131, "uniprot_canonical_ac": "Q8GYF5-1", "length": 622, "uniprot_id": "WAKLR_ARATH", "protein_name": "Wall-associated receptor kinase-like 21", "refseq_ac": "NP_201480", "refseq_name": "Protein kinase superfamily protein", "gene_name": "WAKL21", "gene_names_uniprotkb": "WAKL21; MUD21_3", "gene_names_refseq": "MUD21.3; MUD21_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KKQNKSSNCLIRNKFVENRL", "down_seq": "LSKCKSPVSCLDGATTTTAD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn131", "evidence": [ { "id": "Q8GYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "618", "end_pos": "618" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q8GYF5-1.114.114", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYF5-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q8GYF5-1", "length": 622, "uniprot_id": "WAKLR_ARATH", "protein_name": "Wall-associated receptor kinase-like 21", "refseq_ac": "NP_201480", "refseq_name": "Protein kinase superfamily protein", "gene_name": "WAKL21", "gene_names_uniprotkb": "WAKL21; MUD21_3", "gene_names_refseq": "MUD21.3; MUD21_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SCLDGATTTTADVMSLGDVV", "down_seq": "GSGCKYWFSSISQSQVSVNL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "Q8GYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "618", "end_pos": "618" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYF5-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "Q8GYF5-1", "length": 622, "uniprot_id": "WAKLR_ARATH", "protein_name": "Wall-associated receptor kinase-like 21", "refseq_ac": "NP_201480", "refseq_name": "Protein kinase superfamily protein", "gene_name": "WAKL21", "gene_names_uniprotkb": "WAKL21; MUD21_3", "gene_names_refseq": "MUD21.3; MUD21_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QVSVNLGRLKLDWWLKGSCS", "down_seq": "TTCSENADCAKVKLDDGGLG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn195", "evidence": [ { "id": "Q8GYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "618", "end_pos": "618" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYF5-1.481.481", "start_pos": 481, "end_pos": 481, "uniprot_canonical_ac": "Q8GYF5-1", "length": 622, "uniprot_id": "WAKLR_ARATH", "protein_name": "Wall-associated receptor kinase-like 21", "refseq_ac": "NP_201480", "refseq_name": "Protein kinase superfamily protein", "gene_name": "WAKL21", "gene_names_uniprotkb": "WAKL21; MUD21_3", "gene_names_refseq": "MUD21.3; MUD21_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SRLGMSTDFEASHISTAPQG", "down_seq": "PGYLDPQYHQDFQLSDKSDV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr481", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "618", "end_pos": "618" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYF5-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "Q8GYF5-1", "length": 622, "uniprot_id": "WAKLR_ARATH", "protein_name": "Wall-associated receptor kinase-like 21", "refseq_ac": "NP_201480", "refseq_name": "Protein kinase superfamily protein", "gene_name": "WAKL21", "gene_names_uniprotkb": "WAKL21; MUD21_3", "gene_names_refseq": "MUD21.3; MUD21_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CKTSLLRYPFGFSDGYPIRF", "down_seq": "CSEITGEAVIGEFAVQEVTN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn50", "evidence": [ { "id": "Q8GYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "618", "end_pos": "618" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYF5-1.363.363", "start_pos": 363, "end_pos": 363, "uniprot_canonical_ac": "Q8GYF5-1", "length": 622, "uniprot_id": "WAKLR_ARATH", "protein_name": "Wall-associated receptor kinase-like 21", "refseq_ac": "NP_201480", "refseq_name": "Protein kinase superfamily protein", "gene_name": "WAKL21", "gene_names_uniprotkb": "WAKL21; MUD21_3", "gene_names_refseq": "MUD21.3; MUD21_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLKHKDTTSIDQVVNEIKLL", "down_seq": "SVSHPNLVRLLGCCFADGEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYF5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser363" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "618", "end_pos": "618" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYF5-1.618.618", "start_pos": 618, "end_pos": 618, "uniprot_canonical_ac": "Q8GYF5-1", "length": 622, "uniprot_id": "WAKLR_ARATH", "protein_name": "Wall-associated receptor kinase-like 21", "refseq_ac": "NP_201480", "refseq_name": "Protein kinase superfamily protein", "gene_name": "WAKL21", "gene_names_uniprotkb": "WAKL21; MUD21_3", "gene_names_refseq": "MUD21.3; MUD21_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYF5", "url": "https://www.uniprot.org/uniprotkb/Q8GYF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YGTESGKFKNRSEIDMKRQQ", "down_seq": "FPRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYF5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser618" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "618", "end_pos": "618" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN9-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "Q8GYN9-1", "length": 337, "uniprot_id": "MENB_ARATH", "protein_name": "1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal", "refseq_ac": "", "refseq_name": "", "gene_name": "MENB", "gene_names_uniprotkb": "MENB; F8A5.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN9", "url": "https://www.uniprot.org/uniprotkb/Q8GYN9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The proteome map of spinach leaf peroxisomes indicates partial compartmentalization of phylloquinone (vitamin K1) biosynthesis in plant peroxisomes.", "journal": "Journal of experimental botany", "date": "2010-03", "authors": "Babujee Lavanya, Wurtz Virginie, Ma Changle, Lueder Franziska, Soni Pradeep, van Dorsselaer Alain, Reumann Sigrun", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN9", "url": "https://www.uniprot.org/uniprotkb/Q8GYN9" } ], "reference": [ { "type": "PubMed", "id": "20150517", "url": "https://glygen.org/publication/PubMed/20150517" } ] } ], "crossref": [ { "id": "Q8GYN9", "url": "https://www.uniprot.org/uniprotkb/Q8GYN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20150517", "url": "https://glygen.org/publication/PubMed/20150517", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "", "down_seq": "LIPIGFSPARADSVELCSAS", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "V", "comment": "Loss of peroxisomal targeting.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN9", "url": "https://www.uniprot.org/uniprotkb/Q8GYN9" }, { "database": "PubMed", "id": "20150517", "url": "https://glygen.org/publication/PubMed/20150517" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "20", "end_pos": "20" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN9-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "Q8GYN9-1", "length": 337, "uniprot_id": "MENB_ARATH", "protein_name": "1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal", "refseq_ac": "", "refseq_name": "", "gene_name": "MENB", "gene_names_uniprotkb": "MENB; F8A5.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN9", "url": "https://www.uniprot.org/uniprotkb/Q8GYN9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CDLTIAADNAIFGQTGPKVG", "down_seq": "FDAGYGSSIMSRLVGPKKAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser213" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "20", "end_pos": "20" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYU3-1.962.962", "start_pos": 962, "end_pos": 962, "uniprot_canonical_ac": "Q8GYU3-1", "length": 1465, "uniprot_id": "IYO_ARATH", "protein_name": "Transcriptional elongation regulator MINIYO", "refseq_ac": "NP_195557", "refseq_name": "RPAP1-like, carboxy-terminal protein", "gene_name": "IYO", "gene_names_uniprotkb": "IYO; F20M13.10; F22I13.210; MINIYO", "gene_names_refseq": "F22I13.210; F22I13_210; IYO; MINIYO", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYU3", "url": "https://www.uniprot.org/uniprotkb/Q8GYU3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A molecular switch for initiating cell differentiation in Arabidopsis.", "journal": "Current biology : CB", "date": "2011-06-21", "authors": "Sanmart\u00edn Maite, Sauer Michael, Mu\u00f1oz Alfonso, Zouhar Jan, Ord\u00f3\u00f1ez Angel, van de Ven Wilhelmina T G, Caro Elena, de la Paz S\u00e1nchez Mar\u00eda, Raikhel Natasha V, Guti\u00e9rrez Crisanto, S\u00e1nchez-Serrano Jos\u00e9 J, Rojo Enrique", "evidence": [ { "database": "UniProtKB", "id": "Q8GYU3", "url": "https://www.uniprot.org/uniprotkb/Q8GYU3" } ], "reference": [ { "type": "PubMed", "id": "21620701", "url": "https://glygen.org/publication/PubMed/21620701" } ] } ], "crossref": [ { "id": "Q8GYU3", "url": "https://www.uniprot.org/uniprotkb/Q8GYU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21620701", "url": "https://glygen.org/publication/PubMed/21620701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "RDSVSSEWPIVQSIELHKRG", "down_seq": "LAPGVGLGWGASGGGFWSTR", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In iyo-1; delayed onset of cell differentiation in all meristems, but no effect on the binding to NRPB3 and NRPB10L.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYU3", "url": "https://www.uniprot.org/uniprotkb/Q8GYU3" }, { "database": "PubMed", "id": "21620701", "url": "https://glygen.org/publication/PubMed/21620701" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYY7-1.749.749", "start_pos": 749, "end_pos": 749, "uniprot_canonical_ac": "Q8GYY7-1", "length": 783, "uniprot_id": "DHU1_ARATH", "protein_name": "Protein DWD HYPERSENSITIVE TO UV-B 1", "refseq_ac": "NP_195154", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "DHU1", "gene_names_uniprotkb": "DHU1; F10M10.50; F10M10_50", "gene_names_refseq": "DHU1; DWD HYPERSENSITIVE TO UV-B 1; F10M10.50; F10M10_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYY7", "url": "https://www.uniprot.org/uniprotkb/Q8GYY7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GYY7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYY7" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8GYY7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYY7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRGDPFRDFNMSVLAAYARS", "down_seq": "SLSEIVKVNLLASRDSTAEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYY7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYY7" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser749" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "749", "end_pos": "749" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8GYY7-1.752.752", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYY7-1.752.752", "start_pos": 752, "end_pos": 752, "uniprot_canonical_ac": "Q8GYY7-1", "length": 783, "uniprot_id": "DHU1_ARATH", "protein_name": "Protein DWD HYPERSENSITIVE TO UV-B 1", "refseq_ac": "NP_195154", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "DHU1", "gene_names_uniprotkb": "DHU1; F10M10.50; F10M10_50", "gene_names_refseq": "DHU1; DWD HYPERSENSITIVE TO UV-B 1; F10M10.50; F10M10_50", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYY7", "url": "https://www.uniprot.org/uniprotkb/Q8GYY7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GYY7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYY7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DPFRDFNMSVLAAYARSSSL", "down_seq": "EIVKVNLLASRDSTAEESHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYY7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYY7" } ], "site_lbl": "Ser752" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "749", "end_pos": "749" }, { "start_pos": "752", "end_pos": "752" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8GYY7-1.749.749", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GZ42-1.475.475", "start_pos": 475, "end_pos": 475, "uniprot_canonical_ac": "Q8GZ42-1", "length": 1043, "uniprot_id": "ATX5_ARATH", "protein_name": "Histone-lysine N-methyltransferase ATX5", "refseq_ac": "NP_200155", "refseq_name": "SET domain group 29", "gene_name": "ATX5", "gene_names_uniprotkb": "ATX5; MYN8.4; SDG29; SET29", "gene_names_refseq": "ATX5; MYN8.4; MYN8_4; SDG29; SET domain group 29; SET29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZ42", "url": "https://www.uniprot.org/uniprotkb/Q8GZ42" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GZ42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZ42" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8GZ42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZ42", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLGETDYYCPTCRTKFDFEL", "down_seq": "DSEKPDSKSKLGKNNAPMVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GZ42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZ42" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser475" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "475", "end_pos": "475" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZN1-1.403.403", "start_pos": 403, "end_pos": 403, "uniprot_canonical_ac": "Q8GZN1-1", "length": 704, "uniprot_id": "NPG1_ARATH", "protein_name": "Protein NPG1", "refseq_ac": "NP_001324372", "refseq_name": "tetratricopeptide repeat (TPR)-containing protein", "gene_name": "NPG1", "gene_names_uniprotkb": "NPG1; MFL8.10; NPG", "gene_names_refseq": "MFL8.10; MFL8_10; NPG1; no pollen germination 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZN1", "url": "https://www.uniprot.org/uniprotkb/Q8GZN1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GZN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZN1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8GZN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZN1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKGVGLRMLGLCLGKQAKVP", "down_seq": "SDFERSRLQSESLKALDGAI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GZN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZN1" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr403" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "403", "end_pos": "403" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0V3-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "Q8H0V3-1", "length": 185, "uniprot_id": "LGUL_ARATH", "protein_name": "Lactoylglutathione lyase", "refseq_ac": "", "refseq_name": "", "gene_name": "T6D22.20", "gene_names_uniprotkb": "T6D22.20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0V3", "url": "https://www.uniprot.org/uniprotkb/Q8H0V3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V3" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] } ], "crossref": [ { "id": "Q8H0V3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MASEARE", "down_seq": "PANNPGLSTNRDEATKGYIM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0V3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0V3" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z4-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "Q8H0Z4-1", "length": 395, "uniprot_id": "GT121_ARATH", "protein_name": "Putative glutamine amidotransferase GAT1_2.1", "refseq_ac": "NP_172958", "refseq_name": "Class I glutamine amidotransferase-like superfamily protein", "gene_name": "GAT1_2.1", "gene_names_uniprotkb": "GAT1_2.1; GAT; T15D22.12", "gene_names_refseq": "GAT1_2.1; GAT; T15D22.12; T15D22_12; glutamine amidotransferase 1_2.1; glutamine amidotransferase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z4", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKQVNATQVEMKRKTTTLVK", "down_seq": "FSQAEFLEANTVLSKQQENR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser299" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "299", "end_pos": "299" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8H0Z4-1.301.301", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z4-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "Q8H0Z4-1", "length": 395, "uniprot_id": "GT121_ARATH", "protein_name": "Putative glutamine amidotransferase GAT1_2.1", "refseq_ac": "NP_172958", "refseq_name": "Class I glutamine amidotransferase-like superfamily protein", "gene_name": "GAT1_2.1", "gene_names_uniprotkb": "GAT1_2.1; GAT; T15D22.12", "gene_names_refseq": "GAT1_2.1; GAT; T15D22.12; T15D22_12; glutamine amidotransferase 1_2.1; glutamine amidotransferase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z4", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QVNATQVEMKRKTTTLVKSF", "down_seq": "QAEFLEANTVLSKQQENRLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser301" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "299", "end_pos": "299" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8H0Z4-1.299.299", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H0Z4-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "Q8H0Z4-1", "length": 395, "uniprot_id": "GT121_ARATH", "protein_name": "Putative glutamine amidotransferase GAT1_2.1", "refseq_ac": "NP_172958", "refseq_name": "Class I glutamine amidotransferase-like superfamily protein", "gene_name": "GAT1_2.1", "gene_names_uniprotkb": "GAT1_2.1; GAT; T15D22.12", "gene_names_refseq": "GAT1_2.1; GAT; T15D22.12; T15D22_12; glutamine amidotransferase 1_2.1; glutamine amidotransferase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0Z4", "url": "https://www.uniprot.org/uniprotkb/Q8H0Z4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LEANTVLSKQQENRLKQMGA", "down_seq": "VRNSCVYMKRMKMKEEQERA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H0Z4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H0Z4" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr326" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "299", "end_pos": "299" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUJ2-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q9ZUJ2-1", "length": 173, "uniprot_id": "Q9ZUJ2_ARATH", "protein_name": "D-ribose-binding periplasmic protein", "refseq_ac": "", "refseq_name": "", "gene_name": "T2K10.6; T2K10_6", "gene_names_uniprotkb": "T2K10.6; T2K10_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUJ2", "url": "https://www.uniprot.org/uniprotkb/Q9ZUJ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZUJ2", "url": "https://www.uniprot.org/uniprotkb/Q9ZUJ2" }, { "database": "iPTMnet", "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KNQNLETKDEKQRSVLTNSA", "down_seq": "SRSKTWRPSLQSISEATS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser155" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "58", "end_pos": "58" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9ZUJ2-1.158.158", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUJ2-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "Q9ZUJ2-1", "length": 173, "uniprot_id": "Q9ZUJ2_ARATH", "protein_name": "D-ribose-binding periplasmic protein", "refseq_ac": "", "refseq_name": "", "gene_name": "T2K10.6; T2K10_6", "gene_names_uniprotkb": "T2K10.6; T2K10_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUJ2", "url": "https://www.uniprot.org/uniprotkb/Q9ZUJ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLETKDEKQRSVLTNSASSR", "down_seq": "KTWRPSLQSISEATS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "58", "end_pos": "58" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZUJ2-1.155.155", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUJ2-1.58.58", "start_pos": 58, "end_pos": 58, "uniprot_canonical_ac": "Q9ZUJ2-1", "length": 173, "uniprot_id": "Q9ZUJ2_ARATH", "protein_name": "D-ribose-binding periplasmic protein", "refseq_ac": "", "refseq_name": "", "gene_name": "T2K10.6; T2K10_6", "gene_names_uniprotkb": "T2K10.6; T2K10_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUJ2", "url": "https://www.uniprot.org/uniprotkb/Q9ZUJ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PGHYVSLIIPLPEKNIPATT", "down_seq": "TTDDKSERKVVRFTRVKLLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUJ2" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr58" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "58", "end_pos": "58" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FEFQKTEKEKVNQRMPIRSF", "down_seq": "KPAPSKWDDAQKWIASPTAN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser132" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9ZUM1-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9ZUM1-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TEKEKVNQRMPIRSFSKPAP", "down_seq": "KWDDAQKWIASPTANRPKTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9ZUM1-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9ZUM1-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRSFSKPAPSKWDDAQKWIA", "down_seq": "PTANRPKTGQVQVPGSKKGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser148" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9ZUM1-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9ZUM1-1.137.137", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.174.174", "start_pos": 174, "end_pos": 174, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKTGQVQVPGSKKGPSFGRQ", "down_seq": "SMKIVEVAEHRVVEEPDTKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" } ], "site_lbl": "Ser174" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUM1-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDYERIGKTQVTSSGGGF", "down_seq": "PGKLRSMLLLGVDRKKNEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser19" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.247.247", "start_pos": 247, "end_pos": 247, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LMVENSIVESATEVNLSRHD", "down_seq": "SVATAFAQPPSTARSVSMRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser247" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.277.277", "start_pos": 277, "end_pos": 277, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSTARSVSMRDMGTEMTPIA", "down_seq": "QEPSRNGTPIRATTPIRSPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser277" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9ZUM1-1.281.281", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZUM1-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSVSMRDMGTEMTPIASQEP", "down_seq": "RNGTPIRATTPIRSPISSEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser281" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9ZUM1-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZUM1-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9ZUM1-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9ZUM1-1.299.299", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.285.285", "start_pos": 285, "end_pos": 285, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MRDMGTEMTPIASQEPSRNG", "down_seq": "PIRATTPIRSPISSEPSSPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr285" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9ZUM1-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZUM1-1.281.281", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZUM1-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9ZUM1-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9ZUM1-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9ZUM1-1.303.303", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IASQEPSRNGTPIRATTPIR", "down_seq": "PISSEPSSPGRQASASPMSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser295" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9ZUM1-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9ZUM1-1.281.281", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9ZUM1-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ZUM1-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZUM1-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZUM1-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZUM1-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9ZUM1-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9ZUM1-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.298.298", "start_pos": 298, "end_pos": 298, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QEPSRNGTPIRATTPIRSPI", "down_seq": "SEPSSPGRQASASPMSNKEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser298" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9ZUM1-1.281.281", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9ZUM1-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZUM1-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZUM1-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9ZUM1-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZUM1-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9ZUM1-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPSRNGTPIRATTPIRSPIS", "down_seq": "EPSSPGRQASASPMSNKELS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser299" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9ZUM1-1.281.281", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9ZUM1-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZUM1-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ZUM1-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZUM1-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZUM1-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9ZUM1-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.302.302", "start_pos": 302, "end_pos": 302, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNGTPIRATTPIRSPISSEP", "down_seq": "SPGRQASASPMSNKELSEKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser302" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9ZUM1-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZUM1-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9ZUM1-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZUM1-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9ZUM1-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZUM1-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.303.303", "start_pos": 303, "end_pos": 303, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGTPIRATTPIRSPISSEPS", "down_seq": "PGRQASASPMSNKELSEKEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser303" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9ZUM1-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9ZUM1-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZUM1-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZUM1-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZUM1-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9ZUM1-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPIRSPISSEPSSPGRQASA", "down_seq": "PMSNKELSEKELQMKTRREI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser311" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9ZUM1-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9ZUM1-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9ZUM1-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZUM1-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ZUM1-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSPISSEPSSPGRQASASPM", "down_seq": "NKELSEKELQMKTRREIMVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0S4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0S4" }, { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser314" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9ZUM1-1.295.295", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9ZUM1-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9ZUM1-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9ZUM1-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9ZUM1-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9ZUM1-1.311.311", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CKDVDVVSEITDCSTSGIAR", "down_seq": "ISLGLQEYSDYDNVNEIKSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser86" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9ZUM1-1.88.88", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM1-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "Q9ZUM1-1", "length": 486, "uniprot_id": "Q9ZUM1_ARATH", "protein_name": "Remorin family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F5O4.6; F5O4_6", "gene_names_uniprotkb": "F5O4.6; F5O4_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM1", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVDVVSEITDCSTSGIARSI", "down_seq": "LGLQEYSDYDNVNEIKSVSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM1" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser88" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9ZUM1-1.86.86", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUM8-1.224.224", "start_pos": 224, "end_pos": 224, "uniprot_canonical_ac": "Q9ZUM8-1", "length": 682, "uniprot_id": "Q9ZUM8_ARATH", "protein_name": "Cysteine/Histidine-rich C1 domain family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F3P11.25; F3P11_25", "gene_names_uniprotkb": "F3P11.25; F3P11_25", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM8", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZUM8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AYHTSHPQHPLKSLRYEVPG", "down_seq": "ADKKCLLCREEFDGIHRQLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM8" } ], "site_lbl": "Tyr224" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUM8-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "Q9ZUM8-1", "length": 682, "uniprot_id": "Q9ZUM8_ARATH", "protein_name": "Cysteine/Histidine-rich C1 domain family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F3P11.25; F3P11_25", "gene_names_uniprotkb": "F3P11.25; F3P11_25", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUM8", "url": "https://www.uniprot.org/uniprotkb/Q9ZUM8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZUM8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "FHEHPLIPFTRFEFTKCKGC", "down_seq": "STDEDNTSFISKHPGCSYIY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUM8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUM8" } ], "site_lbl": "Tyr45" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUN9-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "Q9ZUN9-1", "length": 202, "uniprot_id": "Q9ZUN9_ARATH", "protein_name": "Transmembrane protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F3P11.13; F3P11_13", "gene_names_uniprotkb": "F3P11.13; F3P11_13", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUN9", "url": "https://www.uniprot.org/uniprotkb/Q9ZUN9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZUN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUN9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KAILKQFIRAERIPKLLPDD", "down_seq": "VDSSLRDWDKFFSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUN9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUN9" } ], "site_lbl": "Ser188" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUV4-1.560.560", "start_pos": 560, "end_pos": 560, "uniprot_canonical_ac": "Q9ZUV4-1", "length": 577, "uniprot_id": "Q9ZUV4_ARATH", "protein_name": "Major facilitator superfamily protein", "refseq_ac": "NP_180379", "refseq_name": "Major facilitator superfamily protein", "gene_name": "OTU1", "gene_names_uniprotkb": "OTU1; F24D13.9; F24D13_9", "gene_names_refseq": "F24D13.9; F24D13_9; OTU1; ovarian tumor domain (OTU)-containing DUB (deubiquitilating enzyme) 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUV4", "url": "https://www.uniprot.org/uniprotkb/Q9ZUV4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9ZUV4", "url": "https://www.uniprot.org/uniprotkb/Q9ZUV4" }, { "database": "iPTMnet", "id": "Q9ZUV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUV4" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q9ZUV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUV4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRTREFYKGDIYKKFRESPE", "down_seq": "ESELVPDSRKAVEFVGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUV4" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Ser560" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "560", "end_pos": "560" }, { "start_pos": "562", "end_pos": "562" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9ZUV4-1.562.562", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUV4-1.562.562", "start_pos": 562, "end_pos": 562, "uniprot_canonical_ac": "Q9ZUV4-1", "length": 577, "uniprot_id": "Q9ZUV4_ARATH", "protein_name": "Major facilitator superfamily protein", "refseq_ac": "NP_180379", "refseq_name": "Major facilitator superfamily protein", "gene_name": "OTU1", "gene_names_uniprotkb": "OTU1; F24D13.9; F24D13_9", "gene_names_refseq": "F24D13.9; F24D13_9; OTU1; ovarian tumor domain (OTU)-containing DUB (deubiquitilating enzyme) 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUV4", "url": "https://www.uniprot.org/uniprotkb/Q9ZUV4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9ZUV4", "url": "https://www.uniprot.org/uniprotkb/Q9ZUV4" }, { "database": "iPTMnet", "id": "Q9ZUV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUV4" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q9ZUV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUV4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TREFYKGDIYKKFRESPESE", "down_seq": "ELVPDSRKAVEFVGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUV4" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Ser562" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "560", "end_pos": "560" }, { "start_pos": "562", "end_pos": "562" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9ZUV4-1.560.560", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUW8-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "Q9ZUW8-1", "length": 718, "uniprot_id": "Q9ZUW8_ARATH", "protein_name": "Cysteine/Histidine-rich C1 domain family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K20.24; F15K20_24", "gene_names_uniprotkb": "F15K20.24; F15K20_24", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUW8", "url": "https://www.uniprot.org/uniprotkb/Q9ZUW8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GQASRSKKIVGNGPRGGLQG", "down_seq": "NSPIQSPRGPQTRRVQNVRN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser426" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "432", "end_pos": "432" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9ZUW8-1.428.428", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZUW8-1.432.432", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUW8-1.428.428", "start_pos": 428, "end_pos": 428, "uniprot_canonical_ac": "Q9ZUW8-1", "length": 718, "uniprot_id": "Q9ZUW8_ARATH", "protein_name": "Cysteine/Histidine-rich C1 domain family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K20.24; F15K20_24", "gene_names_uniprotkb": "F15K20.24; F15K20_24", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUW8", "url": "https://www.uniprot.org/uniprotkb/Q9ZUW8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASRSKKIVGNGPRGGLQGSN", "down_seq": "PIQSPRGPQTRRVQNVRNNP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser428" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "432", "end_pos": "432" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9ZUW8-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZUW8-1.432.432", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUW8-1.432.432", "start_pos": 432, "end_pos": 432, "uniprot_canonical_ac": "Q9ZUW8-1", "length": 718, "uniprot_id": "Q9ZUW8_ARATH", "protein_name": "Cysteine/Histidine-rich C1 domain family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K20.24; F15K20_24", "gene_names_uniprotkb": "F15K20.24; F15K20_24", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUW8", "url": "https://www.uniprot.org/uniprotkb/Q9ZUW8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKIVGNGPRGGLQGSNSPIQ", "down_seq": "PRGPQTRRVQNVRNNPTRGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUW8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUW8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser432" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "432", "end_pos": "432" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9ZUW8-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZUW8-1.428.428", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZUX0-1.300.300", "start_pos": 300, "end_pos": 300, "uniprot_canonical_ac": "Q9ZUX0-1", "length": 384, "uniprot_id": "Q9ZUX0_ARATH", "protein_name": "NAD(P)-linked oxidoreductase superfamily protein", "refseq_ac": "NP_565656", "refseq_name": "NAD(P)-linked oxidoreductase superfamily protein", "gene_name": "", "gene_names_uniprotkb": "", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUX0", "url": "https://www.uniprot.org/uniprotkb/Q9ZUX0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZUX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUX0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KYKRMVDAWGGWNLFQGLLR", "down_seq": "MKTISTKHGVSIPTVAVRYV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUX0" } ], "site_lbl": "Thr300" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9ZUX0-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9ZUX0-1.305.305", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUX0-1.303.303", "start_pos": 303, "end_pos": 303, "uniprot_canonical_ac": "Q9ZUX0-1", "length": 384, "uniprot_id": "Q9ZUX0_ARATH", "protein_name": "NAD(P)-linked oxidoreductase superfamily protein", "refseq_ac": "NP_565656", "refseq_name": "NAD(P)-linked oxidoreductase superfamily protein", "gene_name": "", "gene_names_uniprotkb": "", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUX0", "url": "https://www.uniprot.org/uniprotkb/Q9ZUX0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZUX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUX0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RMVDAWGGWNLFQGLLRTMK", "down_seq": "ISTKHGVSIPTVAVRYVLDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUX0" } ], "site_lbl": "Thr303" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZUX0-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZUX0-1.305.305", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZUX0-1.305.305", "start_pos": 305, "end_pos": 305, "uniprot_canonical_ac": "Q9ZUX0-1", "length": 384, "uniprot_id": "Q9ZUX0_ARATH", "protein_name": "NAD(P)-linked oxidoreductase superfamily protein", "refseq_ac": "NP_565656", "refseq_name": "NAD(P)-linked oxidoreductase superfamily protein", "gene_name": "", "gene_names_uniprotkb": "", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZUX0", "url": "https://www.uniprot.org/uniprotkb/Q9ZUX0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZUX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUX0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDAWGGWNLFQGLLRTMKTI", "down_seq": "TKHGVSIPTVAVRYVLDQQG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZUX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZUX0" } ], "site_lbl": "Ser305" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9ZUX0-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZUX0-1.303.303", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZV80-1.350.350", "start_pos": 350, "end_pos": 350, "uniprot_canonical_ac": "Q9ZV80-1", "length": 353, "uniprot_id": "Q9ZV80_ARATH", "protein_name": "F-box associated ubiquitination effector family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "T25N22.8; T25N22_8", "gene_names_uniprotkb": "T25N22.8; T25N22_8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZV80", "url": "https://www.uniprot.org/uniprotkb/Q9ZV80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZV80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZV80" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9ZV80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZV80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGFSQCVHLPSLTSVPLEFR", "down_seq": "LQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZV80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZV80" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser350" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVA3-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "Q9ZVA3-1", "length": 439, "uniprot_id": "FDL12_ARATH", "protein_name": "Putative F-box/FBD/LRR-repeat protein At1g78840", "refseq_ac": "", "refseq_name": "", "gene_name": "F9K20.11", "gene_names_uniprotkb": "F9K20.11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVA3", "url": "https://www.uniprot.org/uniprotkb/Q9ZVA3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVA3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVA3" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "Q9ZVA3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVA3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDWNKDLTKIGLVIDAPRLK", "down_seq": "LNLQIHRFKDLVLNSVCSPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVA3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVA3" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "229", "end_pos": "229" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVC1-1.310.310", "start_pos": 310, "end_pos": 310, "uniprot_canonical_ac": "Q9ZVC1-1", "length": 373, "uniprot_id": "FBK42_ARATH", "protein_name": "Putative F-box/kelch-repeat protein At2g41360", "refseq_ac": "", "refseq_name": "", "gene_name": "F13H10.9", "gene_names_uniprotkb": "F13H10.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVC1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVC1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q9ZVC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LYGSAMAEYYGKLAIFWRER", "down_seq": "ISTSINTTKNNNNNNKKKEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC1" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Tyr310" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "310", "end_pos": "310" }, { "start_pos": "318", "end_pos": "318" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q9ZVC1-1.318.318", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVC1-1.318.318", "start_pos": 318, "end_pos": 318, "uniprot_canonical_ac": "Q9ZVC1-1", "length": 373, "uniprot_id": "FBK42_ARATH", "protein_name": "Putative F-box/kelch-repeat protein At2g41360", "refseq_ac": "", "refseq_name": "", "gene_name": "F13H10.9", "gene_names_uniprotkb": "F13H10.9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVC1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVC1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q9ZVC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YYGKLAIFWRERYISTSINT", "down_seq": "KNNNNNNKKKEEKIWSALIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC1" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr318" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "310", "end_pos": "310" }, { "start_pos": "318", "end_pos": "318" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9ZVC1-1.310.310", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVC3-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "Q9ZVC3-1", "length": 269, "uniprot_id": "Q9ZVC3_ARATH", "protein_name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F13H10.7; F13H10_7", "gene_names_uniprotkb": "F13H10.7; F13H10_7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVC3", "url": "https://www.uniprot.org/uniprotkb/Q9ZVC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DTSSKQLEFAAKLPNVRYEI", "down_seq": "PPTMSSSEIEKLVAPESSVD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr82", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVC6-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "Q9ZVC6-1", "length": 224, "uniprot_id": "Q9ZVC6_ARATH", "protein_name": "HSP20-like chaperones superfamily protein", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.19; T20P8_19", "gene_names_uniprotkb": "T20P8.19; T20P8_19", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVC6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVC6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FEGANLVVRLPRTEPMGKQP", "down_seq": "PIGTATKPPPVPKENPNLPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser109" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q9ZVC6-1.129.129", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVC6-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "Q9ZVC6-1", "length": 224, "uniprot_id": "Q9ZVC6_ARATH", "protein_name": "HSP20-like chaperones superfamily protein", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.19; T20P8_19", "gene_names_uniprotkb": "T20P8.19; T20P8_19", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVC6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVC6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPIGTATKPPPVPKENPNLP", "down_seq": "PSAKEKVQPPKETRENETEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser129" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9ZVC6-1.109.109", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVC6-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "Q9ZVC6-1", "length": 224, "uniprot_id": "Q9ZVC6_ARATH", "protein_name": "HSP20-like chaperones superfamily protein", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.19; T20P8_19", "gene_names_uniprotkb": "T20P8.19; T20P8_19", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVC6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVC6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPKETRENETELEKQAEKIQ", "down_seq": "PKPARENEEALNQDYRSKVN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVC6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "158", "end_pos": "158" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.224.224", "start_pos": 224, "end_pos": 224, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" }, { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" }, { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGTPEEEDDGEDFSFQEREE", "down_seq": "RDSDDDEFDEPTSDTLVRSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser224" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9ZVD1-1.227.227", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZVD1-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZVD1-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9ZVD1-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.227.227", "start_pos": 227, "end_pos": 227, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" }, { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" }, { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEEEDDGEDFSFQEREESRD", "down_seq": "DDDEFDEPTSDTLVRSFENF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser227" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZVD1-1.224.224", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9ZVD1-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZVD1-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZVD1-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" }, { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FSFQEREESRDSDDDEFDEP", "down_seq": "SDTLVRSFENFNRVRRDHST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr236" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9ZVD1-1.224.224", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9ZVD1-1.227.227", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZVD1-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ZVD1-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9ZVD1-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" }, { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFQEREESRDSDDDEFDEPT", "down_seq": "DTLVRSFENFNRVRRDHSTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q9ZVD1-1.224.224", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9ZVD1-1.227.227", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZVD1-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZVD1-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9ZVD1-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" }, { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QEREESRDSDDDEFDEPTSD", "down_seq": "LVRSFENFNRVRRDHSTLPQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr239" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9ZVD1-1.224.224", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9ZVD1-1.227.227", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9ZVD1-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZVD1-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9ZVD1-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTSDTLVRSFENFNRVRRDH", "down_seq": "TLPQREGVESDSSDAEKSKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser255" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9ZVD1-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9ZVD1-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9ZVD1-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZVD1-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZVD1-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZVD1-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9ZVD1-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9ZVD1-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENFNRVRRDHSTLPQREGVE", "down_seq": "DSSDAEKSKTPELSPPVTPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser265" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9ZVD1-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZVD1-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ZVD1-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZVD1-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZVD1-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9ZVD1-1.279.279", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FNRVRRDHSTLPQREGVESD", "down_seq": "SDAEKSKTPELSPPVTPLVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser267" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9ZVD1-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZVD1-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZVD1-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZVD1-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZVD1-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9ZVD1-1.279.279", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.268.268", "start_pos": 268, "end_pos": 268, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NRVRRDHSTLPQREGVESDS", "down_seq": "DAEKSKTPELSPPVTPLVAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser268" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q9ZVD1-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9ZVD1-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZVD1-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9ZVD1-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZVD1-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9ZVD1-1.279.279", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DHSTLPQREGVESDSSDAEK", "down_seq": "KTPELSPPVTPLVATPVNKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser273" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9ZVD1-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZVD1-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZVD1-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9ZVD1-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZVD1-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZVD1-1.279.279", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "STLPQREGVESDSSDAEKSK", "down_seq": "PELSPPVTPLVATPVNKTPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr275" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9ZVD1-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9ZVD1-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZVD1-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9ZVD1-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZVD1-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZVD1-1.279.279", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QREGVESDSSDAEKSKTPEL", "down_seq": "PPVTPLVATPVNKTPNKGDH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser279" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9ZVD1-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9ZVD1-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9ZVD1-1.268.268", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZVD1-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZVD1-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.379.379", "start_pos": 379, "end_pos": 379, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTCLSCGEDPKDVPEEPAQN", "down_seq": "VKYLTWHRTESSRSSSSRNP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser379" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VQQALDGRCLLAAAHVSYVQ", "down_seq": "LKSTGTALRKFSETEVPVES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser44" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9ZVD1-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZVD1-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALDGRCLLAAAHVSYVQSLK", "down_seq": "TGTALRKFSETEVPVESSLY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZVD1-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZVD1-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVD1-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "Q9ZVD1-1", "length": 743, "uniprot_id": "Q9ZVD1_ARATH", "protein_name": "BZIP transcription factor (DUF630 and DUF632)", "refseq_ac": "", "refseq_name": "", "gene_name": "T20P8.14; T20P8_14", "gene_names_uniprotkb": "T20P8.14; T20P8_14", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVD1", "url": "https://www.uniprot.org/uniprotkb/Q9ZVD1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LDGRCLLAAAHVSYVQSLKS", "down_seq": "GTALRKFSETEVPVESSLYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVD1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVD1" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr48" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "379", "end_pos": "379" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9ZVD1-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZVD1-1.47.47", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVL0-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "Q9ZVL0-1", "length": 200, "uniprot_id": "Q9ZVL0_ARATH", "protein_name": "Glycoprotein membrane GPI-anchored", "refseq_ac": "NP_564669", "refseq_name": "Glycoprotein membrane precursor GPI-anchored", "gene_name": "F14C21.37; F14C21_37", "gene_names_uniprotkb": "F14C21.37; F14C21_37", "gene_names_refseq": "F14C21.37; F14C21_37", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVL0", "url": "https://www.uniprot.org/uniprotkb/Q9ZVL0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EIADKLEDQPCTNHTTASTV", "down_seq": "PGSVPPRLTNYQDILSECKI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr83", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVP2-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q9ZVP2-1", "length": 439, "uniprot_id": "FBD34_ARATH", "protein_name": "Putative FBD-associated F-box protein At1g05080", "refseq_ac": "", "refseq_name": "", "gene_name": "T7A14.5", "gene_names_uniprotkb": "T7A14.5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVP2", "url": "https://www.uniprot.org/uniprotkb/Q9ZVP2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZVP2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVP2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLVVILDLLPTKDVVATMIL", "down_seq": "KRWLSIWTMVRTLEYTDDMD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVP2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVP2" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVQ2-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q9ZVQ2-1", "length": 318, "uniprot_id": "Q9ZVQ2_ARATH", "protein_name": "NAD(P)-binding Rossmann-fold superfamily protein", "refseq_ac": "", "refseq_name": "", "gene_name": "T16F16.19; T16F16_19", "gene_names_uniprotkb": "T16F16.19; T16F16_19", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVQ2", "url": "https://www.uniprot.org/uniprotkb/Q9ZVQ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVQ2" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q9ZVQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVQ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TGANGFIGSWIIRTLIEKGY", "down_seq": "KIHASIYPGSDPTHLLQLPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVQ2" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT0-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "Q9ZVT0-1", "length": 571, "uniprot_id": "Q9ZVT0_ARATH", "protein_name": "ELKS/Rab6-interacting/CAST family protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.11; F15K9_11", "gene_names_uniprotkb": "F15K9.11; F15K9_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT0", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZVT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENRVPLTKSISSSFTSSCGS", "down_seq": "MKSLVLENPSERLNGVTETS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT0" } ], "site_lbl": "Ser510" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "510", "end_pos": "510" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVT5-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q9ZVT5-1", "length": 385, "uniprot_id": "Q9ZVT5_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.6; F15K9_6", "gene_names_uniprotkb": "F15K9.6; F15K9_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT5", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZVT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTSRAYLVNPGGRKYEILPE", "down_seq": "SFNLKSQLLEPLKPFSSFSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT5" } ], "site_lbl": "Ser44" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "44", "end_pos": "44" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZVT6-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGTAEIIAQGKEAILAAGNE", "down_seq": "DSSDNNSSQSFGRRDSFSSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser127" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9ZVT6-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ZVT6-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZVT6-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZVT6-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZVT6-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9ZVT6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9ZVT6-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAEIIAQGKEAILAAGNESD", "down_seq": "SDNNSSQSFGRRDSFSSKPY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser129" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9ZVT6-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZVT6-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9ZVT6-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZVT6-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZVT6-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9ZVT6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9ZVT6-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEIIAQGKEAILAAGNESDS", "down_seq": "DNNSSQSFGRRDSFSSKPYS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser130" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZVT6-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZVT6-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZVT6-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9ZVT6-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZVT6-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZVT6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9ZVT6-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9ZVT6-1.150.150", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AQGKEAILAAGNESDSSDNN", "down_seq": "SQSFGRRDSFSSKPYSRFDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser134" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9ZVT6-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9ZVT6-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZVT6-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9ZVT6-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ZVT6-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9ZVT6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9ZVT6-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9ZVT6-1.150.150", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGKEAILAAGNESDSSDNNS", "down_seq": "QSFGRRDSFSSKPYSRFDAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser135" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9ZVT6-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZVT6-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9ZVT6-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9ZVT6-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZVT6-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZVT6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9ZVT6-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9ZVT6-1.150.150", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEAILAAGNESDSSDNNSSQ", "down_seq": "FGRRDSFSSKPYSRFDAQIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9ZVT6-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZVT6-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9ZVT6-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9ZVT6-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZVT6-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZVT6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZVT6-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9ZVT6-1.150.150", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGNESDSSDNNSSQSFGRRD", "down_seq": "FSSKPYSRFDAQIRAVQGDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser143" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9ZVT6-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9ZVT6-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9ZVT6-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9ZVT6-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZVT6-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZVT6-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZVT6-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9ZVT6-1.150.150", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NESDSSDNNSSQSFGRRDSF", "down_seq": "SKPYSRFDAQIRAVQGDLNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser145" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9ZVT6-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9ZVT6-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9ZVT6-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9ZVT6-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9ZVT6-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9ZVT6-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZVT6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9ZVT6-1.150.150", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDNNSSQSFGRRDSFSSKPY", "down_seq": "RFDAQIRAVQGDLNTYCEEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser150" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9ZVT6-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9ZVT6-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9ZVT6-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9ZVT6-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9ZVT6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9ZVT6-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.17.17", "start_pos": 17, "end_pos": 17, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MNFFKSVFTEDLDPPE", "down_seq": "ESESDSPKHSEEHEHPEQEH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr17" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9ZVT6-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZVT6-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZVT6-1.23.23", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNFFKSVFTEDLDPPETE", "down_seq": "ESDSPKHSEEHEHPEQEHPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser19" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9ZVT6-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZVT6-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9ZVT6-1.23.23", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNFFKSVFTEDLDPPETESE", "down_seq": "DSPKHSEEHEHPEQEHPEQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9ZVT6-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZVT6-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9ZVT6-1.23.23", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FFKSVFTEDLDPPETESESD", "down_seq": "PKHSEEHEHPEQEHPEQSES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser23" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9ZVT6-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9ZVT6-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9ZVT6-1.21.21", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.339.339", "start_pos": 339, "end_pos": 339, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VTEVSNVGLKTDKDSEEKKE", "down_seq": "DSEEVPEEKSFVDAAPPASD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr339" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9ZVT6-1.341.341", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.341.341", "start_pos": 341, "end_pos": 341, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVSNVGLKTDKDSEEKKETD", "down_seq": "EEVPEEKSFVDAAPPASDEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser341" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9ZVT6-1.339.339", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.431.431", "start_pos": 431, "end_pos": 431, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLGWDEIEDMSSIDGKETSR", "down_seq": "GGSPNRAELRKRLSAAEEDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser431" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9ZVT6-1.434.434", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.434.434", "start_pos": 434, "end_pos": 434, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" }, { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WDEIEDMSSIDGKETSRSGG", "down_seq": "PNRAELRKRLSAAEEDEDLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser434" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9ZVT6-1.431.431", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVT6-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q9ZVT6-1", "length": 470, "uniprot_id": "Q9ZVT6_ARATH", "protein_name": "BSD domain-containing protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F15K9.5; F15K9_5", "gene_names_uniprotkb": "F15K9.5; F15K9_5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVT6", "url": "https://www.uniprot.org/uniprotkb/Q9ZVT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NDDGGWSFGGLMKTLATRSE", "down_seq": "VIETYRRDLEEFGTGLKKEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVT6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVT6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "339", "end_pos": "339" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZVU2-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "Q9ZVU2-1", "length": 725, "uniprot_id": "Q9ZVU2_ARATH", "protein_name": "Cysteine/Histidine-rich C1 domain family protein", "refseq_ac": "NP_564688", "refseq_name": "Cysteine/Histidine-rich C1 domain family protein", "gene_name": "EDA11", "gene_names_uniprotkb": "EDA11; T5A14.16; T5A14_16", "gene_names_refseq": "EDA11; T5A14.16; T5A14_16; embryo sac development arrest 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZVU2", "url": "https://www.uniprot.org/uniprotkb/Q9ZVU2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZVU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVU2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEPPPPHF", "down_seq": "RAKPPCRLSDPAQPHKLCRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZVU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZVU2" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZW32-1.723.723", "start_pos": 723, "end_pos": 723, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TGCNLRILTNQHNKPINPSP", "down_seq": "TSDAFKLFFQGGVQENNNQP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr723", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZW32-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSSSLWTDESSTDSSRGLCA", "down_seq": "PFRKKINHPPLQYYLMSSKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser160" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW32-1.356.356", "start_pos": 356, "end_pos": 356, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVGPFRREADGGSKPFLKRI", "down_seq": "FLSERSCSAPRSRKAESSPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser356" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW32-1.407.407", "start_pos": 407, "end_pos": 407, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETLPKQSDQKPAKVLSERAR", "down_seq": "ISPFRRLSFSIGKSSKNSNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser407" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9ZW32-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9ZW32-1.415.415", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW32-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPKQSDQKPAKVLSERARSI", "down_seq": "PFRRLSFSIGKSSKNSNTED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9ZW32-1.407.407", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9ZW32-1.415.415", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW32-1.415.415", "start_pos": 415, "end_pos": 415, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKPAKVLSERARSISPFRRL", "down_seq": "FSIGKSSKNSNTEDAKTPPH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser415" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9ZW32-1.407.407", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9ZW32-1.409.409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW32-1.630.630", "start_pos": 630, "end_pos": 630, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FLAGERSAENLLTREFVLVA", "down_seq": "ESQRTNELAAMVIKIPKLTD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "site_lbl": "Ser630" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZW32-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDVCPKRLENRLKSRIGRTA", "down_seq": "GERDLVKYKSYVPSYIKKCD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW32-1.815.815", "start_pos": 815, "end_pos": 815, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKKAYGGEMSSIQNENLKSF", "down_seq": "GPIEAEAPARYLSHHPPLSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser815" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q9ZW32-1.834.834", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW32-1.834.834", "start_pos": 834, "end_pos": 834, "uniprot_canonical_ac": "Q9ZW32-1", "length": 839, "uniprot_id": "Q9ZW32_ARATH", "protein_name": "Uncharacterized protein", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.11; F16P2_11", "gene_names_uniprotkb": "F16P2.11; F16P2_11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW32", "url": "https://www.uniprot.org/uniprotkb/Q9ZW32" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSGPIEAEAPARYLSHHPPL", "down_seq": "PVGRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW32", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW32" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser834" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "723", "end_pos": "723" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9ZW32-1.815.815", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZW38-1.410.410", "start_pos": 410, "end_pos": 410, "uniprot_canonical_ac": "Q9ZW38-1", "length": 415, "uniprot_id": "FBK36_ARATH", "protein_name": "F-box/kelch-repeat protein At2g29600", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.2", "gene_names_uniprotkb": "F16P2.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW38", "url": "https://www.uniprot.org/uniprotkb/Q9ZW38" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZW38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW38", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKVQSLSLVNKFRKSPVFVL", "down_seq": "RTVTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW38" } ], "site_lbl": "Ser410" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9ZW38-1.414.414", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZW38-1.414.414", "start_pos": 414, "end_pos": 414, "uniprot_canonical_ac": "Q9ZW38-1", "length": 415, "uniprot_id": "FBK36_ARATH", "protein_name": "F-box/kelch-repeat protein At2g29600", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.2", "gene_names_uniprotkb": "F16P2.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW38", "url": "https://www.uniprot.org/uniprotkb/Q9ZW38" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZW38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW38", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SLSLVNKFRKSPVFVLSRTV", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW38" } ], "site_lbl": "Thr414" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9ZW38-1.410.410", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ZW38-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "Q9ZW38-1", "length": 415, "uniprot_id": "FBK36_ARATH", "protein_name": "F-box/kelch-repeat protein At2g29600", "refseq_ac": "", "refseq_name": "", "gene_name": "F16P2.2", "gene_names_uniprotkb": "F16P2.2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZW38", "url": "https://www.uniprot.org/uniprotkb/Q9ZW38" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9ZW38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW38", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PPQMPLELIVSTIATLRRCH", "down_seq": "PTLSLLSDSFRQVISSVDLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZW38", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZW38" } ], "site_lbl": "Tyr78" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "414", "end_pos": "414" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38847-1.231.231", "start_pos": 231, "end_pos": 231, "uniprot_canonical_ac": "Q38847-1", "length": 268, "uniprot_id": "AGL15_ARATH", "protein_name": "Agamous-like MADS-box protein AGL15", "refseq_ac": "NP_196883", "refseq_name": "AGAMOUS-like 15", "gene_name": "AGL15", "gene_names_uniprotkb": "AGL15; AGAMOUS-like 15; MADS-BOX PROTEIN AGL15; MXE10.6; MXE10.8; MXE10_8", "gene_names_refseq": "AGAMOUS-like 15; AGL15; MADS-BOX PROTEIN AGL15; MXE10.8; MXE10_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38847", "url": "https://www.uniprot.org/uniprotkb/Q38847" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Serine 231 and 257 of Agamous-like 15 are phosphorylated in floral receptacles.", "journal": "Plant signaling & behavior", "date": "2016-07-02", "authors": "Patharkar Osric Rahul, Macken Terra A, Walker John C", "evidence": [ { "database": "iPTMnet", "id": "Q38847", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38847" } ], "reference": [ { "type": "PubMed", "id": "27322882", "url": "https://glygen.org/publication/PubMed/27322882" } ] } ], "crossref": [ { "id": "Q38847", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38847", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27322882", "url": "https://glygen.org/publication/PubMed/27322882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQLGLPGEAHDRRTNEGERE", "down_seq": "PSSDSVTTNTSSETAERGDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38847", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38847" }, { "database": "PubMed", "id": "27322882", "url": "https://glygen.org/publication/PubMed/27322882" } ], "site_lbl": "Ser231" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "231", "end_pos": "231" }, { "start_pos": "257", "end_pos": "257" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38847-1.257.257", "start_pos": 257, "end_pos": 257, "uniprot_canonical_ac": "Q38847-1", "length": 268, "uniprot_id": "AGL15_ARATH", "protein_name": "Agamous-like MADS-box protein AGL15", "refseq_ac": "NP_196883", "refseq_name": "AGAMOUS-like 15", "gene_name": "AGL15", "gene_names_uniprotkb": "AGL15; AGAMOUS-like 15; MADS-BOX PROTEIN AGL15; MXE10.6; MXE10.8; MXE10_8", "gene_names_refseq": "AGAMOUS-like 15; AGL15; MADS-BOX PROTEIN AGL15; MXE10.8; MXE10_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38847", "url": "https://www.uniprot.org/uniprotkb/Q38847" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Serine 231 and 257 of Agamous-like 15 are phosphorylated in floral receptacles.", "journal": "Plant signaling & behavior", "date": "2016-07-02", "authors": "Patharkar Osric Rahul, Macken Terra A, Walker John C", "evidence": [ { "database": "iPTMnet", "id": "Q38847", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38847" } ], "reference": [ { "type": "PubMed", "id": "27322882", "url": "https://glygen.org/publication/PubMed/27322882" } ] } ], "crossref": [ { "id": "Q38847", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38847", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27322882", "url": "https://glygen.org/publication/PubMed/27322882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTTNTSSETAERGDQSSLAN", "down_seq": "PPEAKRQRFSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38847", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38847" }, { "database": "PubMed", "id": "27322882", "url": "https://glygen.org/publication/PubMed/27322882" } ], "site_lbl": "Ser257" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "231", "end_pos": "231" }, { "start_pos": "257", "end_pos": "257" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54968-1.139.139", "start_pos": 139, "end_pos": 139, "uniprot_canonical_ac": "P54968-1", "length": 442, "uniprot_id": "ILR1_ARATH", "protein_name": "IAA-amino acid hydrolase ILR1", "refseq_ac": "NP_186937", "refseq_name": "Peptidase M20/M25/M40 family protein", "gene_name": "ILR1", "gene_names_uniprotkb": "ILR1; F13E7.18; F13E7_18; IAA-AMINO ACID HYDROLASE; IAA-LEUCINE RESISTANT 1", "gene_names_refseq": "F13E7.18; F13E7_18; IAA-AMINO ACID HYDROLASE; IAA-LEUCINE RESISTANT 1; ILR1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates.", "journal": "Science (New York, N.Y.)", "date": "1995-06-23", "authors": "Bartel B, Fink G R", "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" } ], "reference": [ { "type": "PubMed", "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599" } ] } ], "crossref": [ { "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LQELVEWESKSKVDGKMHAC", "down_seq": "HDTHVAMLLGAAKLLQTTKH", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In ilr1-1.", "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" }, { "database": "PubMed", "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54968-1.415.415", "start_pos": 415, "end_pos": 415, "uniprot_canonical_ac": "P54968-1", "length": 442, "uniprot_id": "ILR1_ARATH", "protein_name": "IAA-amino acid hydrolase ILR1", "refseq_ac": "NP_186937", "refseq_name": "Peptidase M20/M25/M40 family protein", "gene_name": "ILR1", "gene_names_uniprotkb": "ILR1; F13E7.18; F13E7_18; IAA-AMINO ACID HYDROLASE; IAA-LEUCINE RESISTANT 1", "gene_names_refseq": "F13E7.18; F13E7_18; IAA-AMINO ACID HYDROLASE; IAA-LEUCINE RESISTANT 1; ILR1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates.", "journal": "Science (New York, N.Y.)", "date": "1995-06-23", "authors": "Bartel B, Fink G R", "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" } ], "reference": [ { "type": "PubMed", "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599" } ] } ], "crossref": [ { "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "GAGKPLHSPYFFVDEEALPV", "down_seq": "AALHAAMAVSYLDEHGHSHE", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In ilr1-2.", "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" }, { "database": "PubMed", "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54968-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "P54968-1", "length": 442, "uniprot_id": "ILR1_ARATH", "protein_name": "IAA-amino acid hydrolase ILR1", "refseq_ac": "NP_186937", "refseq_name": "Peptidase M20/M25/M40 family protein", "gene_name": "ILR1", "gene_names_uniprotkb": "ILR1; F13E7.18; F13E7_18; IAA-AMINO ACID HYDROLASE; IAA-LEUCINE RESISTANT 1", "gene_names_refseq": "F13E7.18; F13E7_18; IAA-AMINO ACID HYDROLASE; IAA-LEUCINE RESISTANT 1; ILR1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates.", "journal": "Science (New York, N.Y.)", "date": "1995-06-23", "authors": "Bartel B, Fink G R", "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" } ], "reference": [ { "type": "PubMed", "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599" } ] } ], "crossref": [ { "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "FEWMRGIRRKIHENPETGFQ", "down_seq": "FKTSQLVRDELDSLGVKYKY", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In ilr1-3.", "evidence": [ { "database": "UniProtKB", "id": "P54968", "url": "https://www.uniprot.org/uniprotkb/P54968" }, { "database": "PubMed", "id": "7792599", "url": "https://glygen.org/publication/PubMed/7792599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81275-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "O81275-1", "length": 276, "uniprot_id": "CSK2D_ARATH", "protein_name": "Casein kinase II subunit beta-3", "refseq_ac": "NP_191584", "refseq_name": "casein kinase II beta chain 3", "gene_name": "CKB3", "gene_names_uniprotkb": "CKB3; F27H5_40; casein kinase II beta chain 3", "gene_names_refseq": "CKB3; casein kinase II beta chain 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81275", "url": "https://www.uniprot.org/uniprotkb/O81275" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81275", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81275" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O81275", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81275", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RKRINDALNKKLEKSSTSTT", "down_seq": "SRVFSSKDKDPFSFTSTKTQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81275", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81275" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr45" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "45", "end_pos": "45" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O81275-1.46.46", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81275-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "O81275-1", "length": 276, "uniprot_id": "CSK2D_ARATH", "protein_name": "Casein kinase II subunit beta-3", "refseq_ac": "NP_191584", "refseq_name": "casein kinase II beta chain 3", "gene_name": "CKB3", "gene_names_uniprotkb": "CKB3; F27H5_40; casein kinase II beta chain 3", "gene_names_refseq": "CKB3; casein kinase II beta chain 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81275", "url": "https://www.uniprot.org/uniprotkb/O81275" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81275", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81275" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O81275", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81275", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRINDALNKKLEKSSTSTTT", "down_seq": "RVFSSKDKDPFSFTSTKTQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81275", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81275" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser46" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "45", "end_pos": "45" }, { "start_pos": "46", "end_pos": "46" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O81275-1.45.45", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0PCS3-1.829.829", "start_pos": 829, "end_pos": 829, "uniprot_canonical_ac": "Q0PCS3-1", "length": 910, "uniprot_id": "CHR25_ARATH", "protein_name": "Protein CHROMATIN REMODELING 25", "refseq_ac": "NP_001189933", "refseq_name": "DNA repair/recombination protein", "gene_name": "CHR25; RAD54", "gene_names_uniprotkb": "CHR25; RAD54; ATRAD54; CHR25; MVI11.13; RAD54; homolog of RAD54", "gene_names_refseq": "ATRAD54; CHR25; RAD54; homolog of RAD54", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PCS3", "url": "https://www.uniprot.org/uniprotkb/Q0PCS3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0PCS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0PCS3" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0PCS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0PCS3" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0PCS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0PCS3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTFVFTNQVDGKLVPIESNV", "down_seq": "PKTVESEEHNRNQPVNKRAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0PCS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0PCS3" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser829" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "829", "end_pos": "829" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRJ2-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "Q0WRJ2-1", "length": 326, "uniprot_id": "KDSRA_ARATH", "protein_name": "3-dehydrosphinganine reductase TSC10A", "refseq_ac": "NP_187257", "refseq_name": "NAD(P)-binding Rossmann-fold superfamily protein", "gene_name": "TSC10A", "gene_names_uniprotkb": "TSC10A; F24F17.4; F24F17_4", "gene_names_refseq": "F24F17.4; F24F17_4; TSC10A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRJ2", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WRJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRJ2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WRJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRJ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALAHRAASEGARVSILARSG", "down_seq": "KLEEAKKSIQLATGVEVATF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WRJ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRJ2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser74" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q27IK7-1.974.974", "start_pos": 974, "end_pos": 974, "uniprot_canonical_ac": "Q27IK7-1", "length": 2066, "uniprot_id": "KN12C_ARATH", "protein_name": "Kinesin-like protein KIN-12C", "refseq_ac": "NP_188362", "refseq_name": "phragmoplast orienting kinesin 1", "gene_name": "KIN12C; POK1", "gene_names_uniprotkb": "KIN12C; POK1; MGD8.20; POK1", "gene_names_refseq": "POK1; phragmoplast orienting kinesin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q27IK7", "url": "https://www.uniprot.org/uniprotkb/Q27IK7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q27IK7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q27IK7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NAWIGDYVEKAAKNCIKKEE", "down_seq": "ILLLQKSLEDARILVAEMNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q27IK7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q27IK7" } ], "site_lbl": "Thr974" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "974", "end_pos": "974" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P59220-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "P59220-1", "length": 149, "uniprot_id": "CALM7_ARATH", "protein_name": "Calmodulin-7", "refseq_ac": "NP_189967", "refseq_name": "calmodulin 7", "gene_name": "CAM7", "gene_names_uniprotkb": "CAM7; AtCAM7; CALMODULIN 7; T28A8.100; Z-box Binding Factor 3; ZBF3; calmodulin 7", "gene_names_refseq": "AtCAM7; CALMODULIN 7; CAM7; Z-box Binding Factor 3; ZBF3; calmodulin 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59220", "url": "https://www.uniprot.org/uniprotkb/P59220" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEEELKEAFRVFDKDQNGFI", "down_seq": "AAELRHVMTNLGEKLTDEEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser102" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P59220-1.82.82", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P59220-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P59220-1.118.118", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59220-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "P59220-1", "length": 149, "uniprot_id": "CALM7_ARATH", "protein_name": "Calmodulin-7", "refseq_ac": "NP_189967", "refseq_name": "calmodulin 7", "gene_name": "CAM7", "gene_names_uniprotkb": "CAM7; AtCAM7; CALMODULIN 7; T28A8.100; Z-box Binding Factor 3; ZBF3; calmodulin 7", "gene_names_refseq": "AtCAM7; CALMODULIN 7; CAM7; Z-box Binding Factor 3; ZBF3; calmodulin 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59220", "url": "https://www.uniprot.org/uniprotkb/P59220" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RVFDKDQNGFISAAELRHVM", "down_seq": "NLGEKLTDEEVDEMIREADV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr111" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P59220-1.102.102", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P59220-1.118.118", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59220-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "P59220-1", "length": 149, "uniprot_id": "CALM7_ARATH", "protein_name": "Calmodulin-7", "refseq_ac": "NP_189967", "refseq_name": "calmodulin 7", "gene_name": "CAM7", "gene_names_uniprotkb": "CAM7; AtCAM7; CALMODULIN 7; T28A8.100; Z-box Binding Factor 3; ZBF3; calmodulin 7", "gene_names_refseq": "AtCAM7; CALMODULIN 7; CAM7; Z-box Binding Factor 3; ZBF3; calmodulin 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59220", "url": "https://www.uniprot.org/uniprotkb/P59220" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NGFISAAELRHVMTNLGEKL", "down_seq": "DEEVDEMIREADVDGDGQIN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr118" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P59220-1.102.102", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P59220-1.111.111", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59220-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "P59220-1", "length": 149, "uniprot_id": "CALM7_ARATH", "protein_name": "Calmodulin-7", "refseq_ac": "NP_189967", "refseq_name": "calmodulin 7", "gene_name": "CAM7", "gene_names_uniprotkb": "CAM7; AtCAM7; CALMODULIN 7; T28A8.100; Z-box Binding Factor 3; ZBF3; calmodulin 7", "gene_names_refseq": "AtCAM7; CALMODULIN 7; CAM7; Z-box Binding Factor 3; ZBF3; calmodulin 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59220", "url": "https://www.uniprot.org/uniprotkb/P59220" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GNGTIDFPEFLNLMARKMKD", "down_seq": "DSEEELKEAFRVFDKDQNGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr80" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P59220-1.82.82", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59220-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "P59220-1", "length": 149, "uniprot_id": "CALM7_ARATH", "protein_name": "Calmodulin-7", "refseq_ac": "NP_189967", "refseq_name": "calmodulin 7", "gene_name": "CAM7", "gene_names_uniprotkb": "CAM7; AtCAM7; CALMODULIN 7; T28A8.100; Z-box Binding Factor 3; ZBF3; calmodulin 7", "gene_names_refseq": "AtCAM7; CALMODULIN 7; CAM7; Z-box Binding Factor 3; ZBF3; calmodulin 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59220", "url": "https://www.uniprot.org/uniprotkb/P59220" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTIDFPEFLNLMARKMKDTD", "down_seq": "EEELKEAFRVFDKDQNGFIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59220", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59220" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser82" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P59220-1.80.80", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P59220-1.102.102", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPQ2-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "Q0WPQ2-1", "length": 773, "uniprot_id": "ETR2_ARATH", "protein_name": "Ethylene receptor 2", "refseq_ac": "NP_001326955", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR2", "gene_names_uniprotkb": "ETR2; K14B15.9; ethylene response 2", "gene_names_refseq": "ETR2; ethylene response 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPQ2", "url": "https://www.uniprot.org/uniprotkb/Q0WPQ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ETR2 is an ETR1-like gene involved in ethylene signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1998-05-12", "authors": "Sakai H, Hua J, Chen Q G, Chang C, Medrano L J, Bleecker A B, Meyerowitz E M", "evidence": [ { "database": "UniProtKB", "id": "Q0WPQ2", "url": "https://www.uniprot.org/uniprotkb/Q0WPQ2" } ], "reference": [ { "type": "PubMed", "id": "9576967", "url": "https://glygen.org/publication/PubMed/9576967" } ] } ], "crossref": [ { "id": "Q0WPQ2", "url": "https://www.uniprot.org/uniprotkb/Q0WPQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9576967", "url": "https://glygen.org/publication/PubMed/9576967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "NILETQRVSDFLIAVAYFSI", "down_seq": "IELLYFVSCSNVPFKWVLFE", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "In etr2-1; ehtylene insensitivity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WPQ2", "url": "https://www.uniprot.org/uniprotkb/Q0WPQ2" }, { "database": "PubMed", "id": "9576967", "url": "https://glygen.org/publication/PubMed/9576967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPQ2-1.527.527", "start_pos": 527, "end_pos": 527, "uniprot_canonical_ac": "Q0WPQ2-1", "length": 773, "uniprot_id": "ETR2_ARATH", "protein_name": "Ethylene receptor 2", "refseq_ac": "NP_001326955", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR2", "gene_names_uniprotkb": "ETR2; K14B15.9; ethylene response 2", "gene_names_refseq": "ETR2; ethylene response 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPQ2", "url": "https://www.uniprot.org/uniprotkb/Q0WPQ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVLKERGSLDRSDHRWAAWR", "down_seq": "PASSADGDVYIRFEMNVEND", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser527" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0WPQ2-1.530.530", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WPQ2-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPQ2-1.530.530", "start_pos": 530, "end_pos": 530, "uniprot_canonical_ac": "Q0WPQ2-1", "length": 773, "uniprot_id": "ETR2_ARATH", "protein_name": "Ethylene receptor 2", "refseq_ac": "NP_001326955", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR2", "gene_names_uniprotkb": "ETR2; K14B15.9; ethylene response 2", "gene_names_refseq": "ETR2; ethylene response 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPQ2", "url": "https://www.uniprot.org/uniprotkb/Q0WPQ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KERGSLDRSDHRWAAWRSPA", "down_seq": "SADGDVYIRFEMNVENDDSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser530" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WPQ2-1.527.527", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WPQ2-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPQ2-1.531.531", "start_pos": 531, "end_pos": 531, "uniprot_canonical_ac": "Q0WPQ2-1", "length": 773, "uniprot_id": "ETR2_ARATH", "protein_name": "Ethylene receptor 2", "refseq_ac": "NP_001326955", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR2", "gene_names_uniprotkb": "ETR2; K14B15.9; ethylene response 2", "gene_names_refseq": "ETR2; ethylene response 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPQ2", "url": "https://www.uniprot.org/uniprotkb/Q0WPQ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERGSLDRSDHRWAAWRSPAS", "down_seq": "ADGDVYIRFEMNVENDDSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPQ2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser531" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "66", "end_pos": "66" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WPQ2-1.527.527", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WPQ2-1.530.530", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WVH0-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "Q0WVH0-1", "length": 594, "uniprot_id": "RBLOT_ARATH", "protein_name": "Protein REBELOTE", "refseq_ac": "NP_567023", "refseq_name": "Noc2p family", "gene_name": "RBL", "gene_names_uniprotkb": "RBL; REBELOTE; T22E16.170", "gene_names_refseq": "RBL; REBELOTE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WVH0", "url": "https://www.uniprot.org/uniprotkb/Q0WVH0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "REBELOTE, SQUINT, and ULTRAPETALA1 function redundantly in the temporal regulation of floral meristem termination in Arabidopsis thaliana.", "journal": "The Plant cell", "date": "2008-04", "authors": "Prunet Nathana\u00ebl, Morel Patrice, Thierry Anne-Marie, Eshed Yuval, Bowman John L, Negrutiu Ioan, Trehin Christophe", "evidence": [ { "database": "UniProtKB", "id": "Q0WVH0", "url": "https://www.uniprot.org/uniprotkb/Q0WVH0" } ], "reference": [ { "type": "PubMed", "id": "18441215", "url": "https://glygen.org/publication/PubMed/18441215" } ] } ], "crossref": [ { "id": "Q0WVH0", "url": "https://www.uniprot.org/uniprotkb/Q0WVH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18441215", "url": "https://glygen.org/publication/PubMed/18441215", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "MGKLGKK", "down_seq": "RKFAKKNLQSVEKRSRKLKP", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In rbl-1; indeterminate flowers in crc-1 background.", "evidence": [ { "database": "UniProtKB", "id": "Q0WVH0", "url": "https://www.uniprot.org/uniprotkb/Q0WVH0" }, { "database": "PubMed", "id": "18441215", "url": "https://glygen.org/publication/PubMed/18441215" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRJ7-1.227.227", "start_pos": 227, "end_pos": 227, "uniprot_canonical_ac": "Q0WRJ7-1", "length": 242, "uniprot_id": "FK202_ARATH", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic", "refseq_ac": "NP_567098", "refseq_name": "FKBP-like peptidyl-prolyl cis-trans isomerase family protein", "gene_name": "FKBP20-2", "gene_names_uniprotkb": "FKBP20-2; T8B10.30", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A redox-active FKBP-type immunophilin functions in accumulation of the photosystem II supercomplex in Arabidopsis thaliana.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006-08-15", "authors": "Lima Amparo, Lima Santiago, Wong Joshua H, Phillips Robert S, Buchanan Bob B, Luan Sheng", "evidence": [ { "database": "UniProtKB", "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7" } ], "reference": [ { "type": "PubMed", "id": "16894144", "url": "https://glygen.org/publication/PubMed/16894144" } ] } ], "crossref": [ { "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16894144", "url": "https://glygen.org/publication/PubMed/16894144", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "TFFSSKQFEVFDVELLSIQN", "down_seq": "ERRTIIGFYSDVTCS", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "50% reduction of activity; when associated with S-241.", "evidence": [ { "database": "UniProtKB", "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7" }, { "database": "PubMed", "id": "16894144", "url": "https://glygen.org/publication/PubMed/16894144" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "227", "end_pos": "227" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q0WRJ7-1.241.241", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRJ7-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "Q0WRJ7-1", "length": 242, "uniprot_id": "FK202_ARATH", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic", "refseq_ac": "NP_567098", "refseq_name": "FKBP-like peptidyl-prolyl cis-trans isomerase family protein", "gene_name": "FKBP20-2", "gene_names_uniprotkb": "FKBP20-2; T8B10.30", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A redox-active FKBP-type immunophilin functions in accumulation of the photosystem II supercomplex in Arabidopsis thaliana.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006-08-15", "authors": "Lima Amparo, Lima Santiago, Wong Joshua H, Phillips Robert S, Buchanan Bob B, Luan Sheng", "evidence": [ { "database": "UniProtKB", "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7" } ], "reference": [ { "type": "PubMed", "id": "16894144", "url": "https://glygen.org/publication/PubMed/16894144" } ] } ], "crossref": [ { "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16894144", "url": "https://glygen.org/publication/PubMed/16894144", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "LLSIQNCERRTIIGFYSDVT", "down_seq": "", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "50% reduction of activity; when associated with S-227.", "evidence": [ { "database": "UniProtKB", "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7" }, { "database": "PubMed", "id": "16894144", "url": "https://glygen.org/publication/PubMed/16894144" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "227", "end_pos": "227" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WRJ7-1.227.227", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WRJ7-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "Q0WRJ7-1", "length": 242, "uniprot_id": "FK202_ARATH", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic", "refseq_ac": "NP_567098", "refseq_name": "FKBP-like peptidyl-prolyl cis-trans isomerase family protein", "gene_name": "FKBP20-2", "gene_names_uniprotkb": "FKBP20-2; T8B10.30", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WRJ7", "url": "https://www.uniprot.org/uniprotkb/Q0WRJ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WRJ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRJ7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WRJ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRJ7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FHYIGYNESGRRIDSTYIQG", "down_seq": "PARIRMGTNALVPGFEMGIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WRJ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WRJ7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser163" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "227", "end_pos": "227" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WP44-1.36.37", "start_pos": 36, "end_pos": 37, "uniprot_canonical_ac": "Q0WP44-1", "length": 1202, "uniprot_id": "HASTY_ARATH", "protein_name": "Protein HASTY 1", "refseq_ac": "NP_187155", "refseq_name": "ARM repeat superfamily protein", "gene_name": "HST1; HST", "gene_names_uniprotkb": "HST1; HST; HASTY 1; HASTY; HST1; T9J14.1; T9J14_1", "gene_names_refseq": "HASTY 1; HASTY; HST1; HST; T9J14.1; T9J14_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WP44", "url": "https://www.uniprot.org/uniprotkb/Q0WP44" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis.", "journal": "Development (Cambridge, England)", "date": "2003-04", "authors": "Bollman Krista M, Aukerman Milo J, Park Mee-Yeon, Hunter Christine, Berardini Tanya Z, Poethig R Scott", "evidence": [ { "database": "UniProtKB", "id": "Q0WP44", "url": "https://www.uniprot.org/uniprotkb/Q0WP44" } ], "reference": [ { "type": "PubMed", "id": "12620976", "url": "https://glygen.org/publication/PubMed/12620976" } ] } ], "crossref": [ { "id": "Q0WP44", "url": "https://www.uniprot.org/uniprotkb/Q0WP44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12620976", "url": "https://glygen.org/publication/PubMed/12620976", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "DS", "start_aa": "D", "up_seq": "LAVVDFSSTSDTRKSAVQFL", "down_seq": "VKSGDVRVLAKTSFHLVKKE", "mutagenesis": [ { "sequence_org": "DS", "sequence_mut": "A", "comment": "In hst-3; loss of binding to RAN1 and miRNA transport function.", "evidence": [ { "database": "UniProtKB", "id": "Q0WP44", "url": "https://www.uniprot.org/uniprotkb/Q0WP44" }, { "database": "PubMed", "id": "12620976", "url": "https://glygen.org/publication/PubMed/12620976" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "36", "end_pos": "37" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "581", "end_pos": "581" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "779", "end_pos": "779" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WP44-1.581.581", "start_pos": 581, "end_pos": 581, "uniprot_canonical_ac": "Q0WP44-1", "length": 1202, "uniprot_id": "HASTY_ARATH", "protein_name": "Protein HASTY 1", "refseq_ac": "NP_187155", "refseq_name": "ARM repeat superfamily protein", "gene_name": "HST1; HST", "gene_names_uniprotkb": "HST1; HST; HASTY 1; HASTY; HST1; T9J14.1; T9J14_1", "gene_names_refseq": "HASTY 1; HASTY; HST1; HST; T9J14.1; T9J14_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WP44", "url": "https://www.uniprot.org/uniprotkb/Q0WP44" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WP44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP44", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EPELMKVHVHYLDAMGPFLK", "down_seq": "FPDAVGSLINKLFELLTSLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WP44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP44" } ], "site_lbl": "Tyr581" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "36", "end_pos": "37" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "581", "end_pos": "581" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "779", "end_pos": "779" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WP44-1.776.776", "start_pos": 776, "end_pos": 776, "uniprot_canonical_ac": "Q0WP44-1", "length": 1202, "uniprot_id": "HASTY_ARATH", "protein_name": "Protein HASTY 1", "refseq_ac": "NP_187155", "refseq_name": "ARM repeat superfamily protein", "gene_name": "HST1; HST", "gene_names_uniprotkb": "HST1; HST; HASTY 1; HASTY; HST1; T9J14.1; T9J14_1", "gene_names_refseq": "HASTY 1; HASTY; HST1; HST; T9J14.1; T9J14_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WP44", "url": "https://www.uniprot.org/uniprotkb/Q0WP44" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WP44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP44", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAHHLSWMLPPLLKLLRVLH", "down_seq": "LWSPSVFQTLPPEMRAAMTM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WP44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP44" } ], "site_lbl": "Ser776" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "36", "end_pos": "37" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "581", "end_pos": "581" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "779", "end_pos": "779" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0WP44-1.779.779", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WP44-1.779.779", "start_pos": 779, "end_pos": 779, "uniprot_canonical_ac": "Q0WP44-1", "length": 1202, "uniprot_id": "HASTY_ARATH", "protein_name": "Protein HASTY 1", "refseq_ac": "NP_187155", "refseq_name": "ARM repeat superfamily protein", "gene_name": "HST1; HST", "gene_names_uniprotkb": "HST1; HST; HASTY 1; HASTY; HST1; T9J14.1; T9J14_1", "gene_names_refseq": "HASTY 1; HASTY; HST1; HST; T9J14.1; T9J14_1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WP44", "url": "https://www.uniprot.org/uniprotkb/Q0WP44" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WP44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP44", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HLSWMLPPLLKLLRVLHSLW", "down_seq": "PSVFQTLPPEMRAAMTMTDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WP44", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP44" } ], "site_lbl": "Ser779" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "36", "end_pos": "37" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "581", "end_pos": "581" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "779", "end_pos": "779" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WP44-1.776.776", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P46607-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "P46607-1", "length": 747, "uniprot_id": "HGL2_ARATH", "protein_name": "Homeobox-leucine zipper protein GLABRA 2", "refseq_ac": "NP_565223", "refseq_name": "HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein", "gene_name": "GL2", "gene_names_uniprotkb": "GL2; ATHB10; F19K16.20; F19K16_20; GLABRA 2; HOMEOBOX PROTEIN GLABRA 2", "gene_names_refseq": "F19K16.20; F19K16_20; GL2; GLABRA 2; HOMEOBOX PROTEIN GLABRA 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46607", "url": "https://www.uniprot.org/uniprotkb/P46607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P46607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46607", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSMAVDMSSKQP", "down_seq": "KDFFSSPALSLSLAGIFRNA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46607" } ], "site_lbl": "Thr13" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P46607-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P46607-1.9.9", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P46607-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "P46607-1", "length": 747, "uniprot_id": "HGL2_ARATH", "protein_name": "Homeobox-leucine zipper protein GLABRA 2", "refseq_ac": "NP_565223", "refseq_name": "HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein", "gene_name": "GL2", "gene_names_uniprotkb": "GL2; ATHB10; F19K16.20; F19K16_20; GLABRA 2; HOMEOBOX PROTEIN GLABRA 2", "gene_names_refseq": "F19K16.20; F19K16_20; GL2; GLABRA 2; HOMEOBOX PROTEIN GLABRA 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46607", "url": "https://www.uniprot.org/uniprotkb/P46607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P46607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46607", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSMAVDM", "down_seq": "SKQPTKDFFSSPALSLSLAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46607" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P46607-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P46607-1.13.13", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P46607-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "P46607-1", "length": 747, "uniprot_id": "HGL2_ARATH", "protein_name": "Homeobox-leucine zipper protein GLABRA 2", "refseq_ac": "NP_565223", "refseq_name": "HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein", "gene_name": "GL2", "gene_names_uniprotkb": "GL2; ATHB10; F19K16.20; F19K16_20; GLABRA 2; HOMEOBOX PROTEIN GLABRA 2", "gene_names_refseq": "F19K16.20; F19K16_20; GL2; GLABRA 2; HOMEOBOX PROTEIN GLABRA 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46607", "url": "https://www.uniprot.org/uniprotkb/P46607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P46607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46607", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSMAVDMS", "down_seq": "KQPTKDFFSSPALSLSLAGI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46607" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P46607-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P46607-1.13.13", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38951-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "Q38951-1", "length": 587, "uniprot_id": "2AAG_ARATH", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform", "refseq_ac": "NP_001184981", "refseq_name": "protein phosphatase 2A subunit A3", "gene_name": "PP2AA3", "gene_names_uniprotkb": "PP2AA3; DF2; PR65; T6J4.8; T6J4_8", "gene_names_refseq": "65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A; PP2AA3; PR65; T6J4.8; T6J4_8; protein phosphatase 2A subunit A3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38951", "url": "https://www.uniprot.org/uniprotkb/Q38951" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "M", "down_seq": "MVDEPLYPIAVLIDELKNDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38951" } ], "site_lbl": "Ser2" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "2", "end_pos": "2" }, { "start_pos": "586", "end_pos": "586" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38951-1.586.586", "start_pos": 586, "end_pos": 586, "uniprot_canonical_ac": "Q38951-1", "length": 587, "uniprot_id": "2AAG_ARATH", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform", "refseq_ac": "NP_001184981", "refseq_name": "protein phosphatase 2A subunit A3", "gene_name": "PP2AA3", "gene_names_uniprotkb": "PP2AA3; DF2; PR65; T6J4.8; T6J4_8", "gene_names_refseq": "65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A; PP2AA3; PR65; T6J4.8; T6J4_8; protein phosphatase 2A subunit A3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38951", "url": "https://www.uniprot.org/uniprotkb/Q38951" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q38951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38951" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q38951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38951", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVDVRYFANQALQSIDNVMM", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38951" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser586" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "2", "end_pos": "2" }, { "start_pos": "586", "end_pos": "586" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "C0SUW7-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "C0SUW7-1", "length": 398, "uniprot_id": "ARID6_ARATH", "protein_name": "AT-rich interactive domain-containing protein 6", "refseq_ac": "NP_173515", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID3; ARID6", "gene_names_uniprotkb": "ARID3; ARID6; F9H16.11; F9H16_11", "gene_names_refseq": "F9H16.11; F9H16_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "C0SUW7", "url": "https://www.uniprot.org/uniprotkb/C0SUW7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "C0SUW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUW7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "C0SUW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUW7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ISTPKHKKLKSIGLQKHKQQ", "down_seq": "SMDHVVTNEADKQLAAEVVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "C0SUW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUW7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr284" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "284", "end_pos": "284" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "C0SUW7-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "C0SUW7-1", "length": 398, "uniprot_id": "ARID6_ARATH", "protein_name": "AT-rich interactive domain-containing protein 6", "refseq_ac": "NP_173515", "refseq_name": "ARID/BRIGHT DNA-binding domain-containing protein", "gene_name": "ARID3; ARID6", "gene_names_uniprotkb": "ARID3; ARID6; F9H16.11; F9H16_11", "gene_names_refseq": "F9H16.11; F9H16_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "C0SUW7", "url": "https://www.uniprot.org/uniprotkb/C0SUW7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "C0SUW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUW7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "C0SUW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUW7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGAVGVVDHSERKTRRVQML", "down_seq": "PKTEGENAKKRKTWLLDSEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "C0SUW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUW7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "284", "end_pos": "284" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WVW7-1.480.480", "start_pos": 480, "end_pos": 480, "uniprot_canonical_ac": "Q0WVW7-1", "length": 911, "uniprot_id": "RQL5_ARATH", "protein_name": "ATP-dependent DNA helicase Q-like 5", "refseq_ac": "NP_174109", "refseq_name": "DEAD/DEAH box RNA helicase family protein", "gene_name": "RECQL5", "gene_names_uniprotkb": "RECQL5; F28L5.4; F28L5_4; RECQ5; RQL5", "gene_names_refseq": "F28L5.4; F28L5_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WVW7", "url": "https://www.uniprot.org/uniprotkb/Q0WVW7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WVW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVW7" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q0WVW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVW7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELSVSLSGANRMKDLLILME", "down_seq": "PPYKEIRSIIVYCKFQYETD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WVW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVW7" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser480" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "480", "end_pos": "480" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WVW7-1.600.600", "start_pos": 600, "end_pos": 600, "uniprot_canonical_ac": "Q0WVW7-1", "length": 911, "uniprot_id": "RQL5_ARATH", "protein_name": "ATP-dependent DNA helicase Q-like 5", "refseq_ac": "NP_174109", "refseq_name": "DEAD/DEAH box RNA helicase family protein", "gene_name": "RECQL5", "gene_names_uniprotkb": "RECQL5; F28L5.4; F28L5_4; RECQ5; RQL5", "gene_names_refseq": "F28L5.4; F28L5_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WVW7", "url": "https://www.uniprot.org/uniprotkb/Q0WVW7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WVW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVW7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGRLSYCHLFYDNDTYLKLR", "down_seq": "LAHSDGVDEYAVGKFLTHVF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WVW7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVW7" } ], "site_lbl": "Ser600" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "480", "end_pos": "480" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P46640-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "P46640-1", "length": 310, "uniprot_id": "KNAT2_ARATH", "protein_name": "Homeobox protein knotted-1-like 2", "refseq_ac": "NP_177208", "refseq_name": "homeobox knotted-like protein", "gene_name": "KNAT2", "gene_names_uniprotkb": "KNAT2; ARABIDOPSIS THALIANA KN 1; ATK1; F24J13.8; F24J13_8", "gene_names_refseq": "ARABIDOPSIS THALIANA KN 1; ATK1; F24J13.8; F24J13_8; KNAT2; KNOTTED-like from Arabidopsis thaliana 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46640", "url": "https://www.uniprot.org/uniprotkb/P46640" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "REARQALLDWWNVHNKWPYP", "down_seq": "EGDKISLAEETGLDQKQINN", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr259", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "259", "end_pos": "259" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P46640-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "P46640-1", "length": 310, "uniprot_id": "KNAT2_ARATH", "protein_name": "Homeobox protein knotted-1-like 2", "refseq_ac": "NP_177208", "refseq_name": "homeobox knotted-like protein", "gene_name": "KNAT2", "gene_names_uniprotkb": "KNAT2; ARABIDOPSIS THALIANA KN 1; ATK1; F24J13.8; F24J13_8", "gene_names_refseq": "ARABIDOPSIS THALIANA KN 1; ATK1; F24J13.8; F24J13_8; KNAT2; KNOTTED-like from Arabidopsis thaliana 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46640", "url": "https://www.uniprot.org/uniprotkb/P46640" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "P46640", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46640" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] } ], "crossref": [ { "id": "P46640", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46640", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LATALSSELLPRIRKAEDNF", "down_seq": "LSVIKSKIASHPLYPRLLQT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46640", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46640" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "259", "end_pos": "259" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39086-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KISGNNLVIFDQSDRPVWST", "down_seq": "ITGGDVRSPVAAELLDNGNF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn116", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WNGMRFSSVPGTIQVDYMVY", "down_seq": "FTASKEEVTYSYRINKTNLY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn236", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q39086-1.251.251", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DYMVYNFTASKEEVTYSYRI", "down_seq": "KTNLYSRLYLNSAGLLQRLT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn251", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q39086-1.236.236", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.381.381", "start_pos": 381, "end_pos": 381, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TIVDREIGLKVCKERCLEDC", "down_seq": "CTAFANADIRNGGSGCVIWT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn381", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LAFSVSPNTLSATESLTISS", "down_seq": "KTIISPSQIFELGFFNPASS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn41", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IIPIRTYVWVANRDNPLSSS", "down_seq": "GTLKISGNNLVIFDQSDRPV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn92", "evidence": [ { "id": "Q39086", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39086#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.547.547", "start_pos": 547, "end_pos": 547, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis.", "journal": "Plant physiology", "date": "2008-08", "authors": "Samuel Marcus A, Mudgil Yashwanti, Salt Jennifer N, Delmas Fr\u00e9d\u00e9ric, Ramachandran Shaliny, Chilelli Andrea, Goring Daphne R", "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "reference": [ { "type": "PubMed", "id": "18552232", "url": "https://glygen.org/publication/PubMed/18552232" } ] } ], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18552232", "url": "https://glygen.org/publication/PubMed/18552232", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "QGGFGIVYKGRLLDGKEIAV", "down_seq": "RLSKMSSQGTDEFMNEVRLI", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" }, { "database": "PubMed", "id": "18552232", "url": "https://glygen.org/publication/PubMed/18552232" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q39086-1.553.553", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39086-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39086", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39086" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39086", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39086", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QTPNVDQVRSQDSLINDVVV", "down_seq": "RRGYTSKEKKSEYLELPLLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39086", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39086" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser488" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39086-1.553.553", "start_pos": 553, "end_pos": 553, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VYKGRLLDGKEIAVKRLSKM", "down_seq": "SQGTDEFMNEVRLIAKLQHI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "site_lbl": "Ser553" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q39086-1.547.547", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.648.648", "start_pos": 648, "end_pos": 648, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLLYLHQDSRCRIIHRDLKA", "down_seq": "NVLLDKNMTPKISDFGMARI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "site_lbl": "Ser648" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q39086-1.661.661", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.661.661", "start_pos": 661, "end_pos": 661, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IHRDLKASNVLLDKNMTPKI", "down_seq": "DFGMARIFGREETEANTRRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "site_lbl": "Ser661" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q39086-1.648.648", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q39086-1.678.678", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.678.678", "start_pos": 678, "end_pos": 678, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PKISDFGMARIFGREETEAN", "down_seq": "RRVVGTYGYMSPEYAMDGIF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "site_lbl": "Thr678" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q39086-1.661.661", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39086-1.820.820", "start_pos": 820, "end_pos": 820, "uniprot_canonical_ac": "Q39086-1", "length": 843, "uniprot_id": "SD17_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-7", "refseq_ac": "NP_176755", "refseq_name": "receptor kinase 1", "gene_name": "RK1; SD17", "gene_names_uniprotkb": "RK1; SD17; ARK1; F1E22.15; F1E22_15; receptor kinase 1", "gene_names_refseq": "ARK1; F1E22.15; F1E22_15; RK1; receptor kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AIPQPKRPGFCIGRSPLEAD", "down_seq": "SSSTQRDDECTVNQITLSVI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39086", "url": "https://www.uniprot.org/uniprotkb/Q39086" } ], "site_lbl": "Ser820" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "820", "end_pos": "820" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q37145-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q37145-1", "length": 1020, "uniprot_id": "ACA1_ARATH", "protein_name": "Calcium-transporting ATPase 1", "refseq_ac": "NP_001321522", "refseq_name": "autoinhibited Ca2+-ATPase 1", "gene_name": "ACA1", "gene_names_uniprotkb": "ACA1; CA2+-ATPASE; F28L5.1; PEA1; PLASTID ENVELOPE ATPASE 1; T22C5.23; T22C5_23; autoinhibited Ca2+-ATPase 1", "gene_names_refseq": "ACA1; CA2+-ATPASE; PEA1; PLASTID ENVELOPE ATPASE 1; T22C5.23; T22C5_23; autoinhibited Ca2+-ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q37145", "url": "https://www.uniprot.org/uniprotkb/Q37145" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q37145", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q37145" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q37145", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q37145" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q37145", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q37145" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q37145", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q37145" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q37145", "url": "https://www.uniprot.org/uniprotkb/Q37145", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q37145", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q37145", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKLCWIVKNPKRRFRFTANL", "down_seq": "KRSEAEAIRRSNQEKFRVAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CPK", "evidence": [ { "database": "UniProtKB", "id": "Q37145", "url": "https://www.uniprot.org/uniprotkb/Q37145" }, { "database": "iPTMnet", "id": "Q37145", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q37145" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser46" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "46", "end_pos": "46" }, { "start_pos": "740", "end_pos": "740" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q37145-1.740.740", "start_pos": 740, "end_pos": 740, "uniprot_canonical_ac": "Q37145-1", "length": 1020, "uniprot_id": "ACA1_ARATH", "protein_name": "Calcium-transporting ATPase 1", "refseq_ac": "NP_001321522", "refseq_name": "autoinhibited Ca2+-ATPase 1", "gene_name": "ACA1", "gene_names_uniprotkb": "ACA1; CA2+-ATPASE; F28L5.1; PEA1; PLASTID ENVELOPE ATPASE 1; T22C5.23; T22C5_23; autoinhibited Ca2+-ATPase 1", "gene_names_refseq": "ACA1; CA2+-ATPASE; PEA1; PLASTID ENVELOPE ATPASE 1; T22C5.23; T22C5_23; autoinhibited Ca2+-ATPase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q37145", "url": "https://www.uniprot.org/uniprotkb/Q37145" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q37145", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q37145", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLKLIPKLQVMARSSPMDKH", "down_seq": "LVRLLRTMFQEVVAVTGDGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q37145", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q37145" } ], "site_lbl": "Thr740" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "46", "end_pos": "46" }, { "start_pos": "740", "end_pos": "740" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1JPL7-1.319.319", "start_pos": 319, "end_pos": 319, "uniprot_canonical_ac": "Q1JPL7-1", "length": 557, "uniprot_id": "PME18_ARATH", "protein_name": "Pectinesterase/pectinesterase inhibitor 18", "refseq_ac": "", "refseq_name": "", "gene_name": "PME18; PMEPCRA", "gene_names_uniprotkb": "PME18; PMEPCRA; ARATH4; ATPMEPCRA; T23J18.23; T23J18.24; T23J18.33; T23J18_24; methylesterase PCR A", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1JPL7", "url": "https://www.uniprot.org/uniprotkb/Q1JPL7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q1JPL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1JPL7" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q1JPL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1JPL7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVGDGKDATIITGSLNVIDG", "down_seq": "TTFRSATVAANGDGFMAQDI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1JPL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1JPL7" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser319" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "319", "end_pos": "319" }, { "start_pos": "320", "end_pos": "320" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q1JPL7-1.320.320", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1JPL7-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q1JPL7-1", "length": 557, "uniprot_id": "PME18_ARATH", "protein_name": "Pectinesterase/pectinesterase inhibitor 18", "refseq_ac": "", "refseq_name": "", "gene_name": "PME18; PMEPCRA", "gene_names_uniprotkb": "PME18; PMEPCRA; ARATH4; ATPMEPCRA; T23J18.23; T23J18.24; T23J18.33; T23J18_24; methylesterase PCR A", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1JPL7", "url": "https://www.uniprot.org/uniprotkb/Q1JPL7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q1JPL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1JPL7" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q1JPL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1JPL7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VGDGKDATIITGSLNVIDGS", "down_seq": "TFRSATVAANGDGFMAQDIW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1JPL7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1JPL7" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr320" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "319", "end_pos": "319" }, { "start_pos": "320", "end_pos": "320" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q1JPL7-1.319.319", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93047-1.117.117", "start_pos": 117, "end_pos": 117, "uniprot_canonical_ac": "P93047-1", "length": 141, "uniprot_id": "HMGB3_ARATH", "protein_name": "High mobility group B protein 3", "refseq_ac": "NP_001031075", "refseq_name": "high mobility group B3", "gene_name": "HMGB3", "gene_names_uniprotkb": "HMGB3; F2D10; HMG1; HMGB2; HMGBETA2; NFD03; NFD3; high mobility group B3", "gene_names_refseq": "HMGB3; NFD03; NFD3; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR; high mobility group B3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93047", "url": "https://www.uniprot.org/uniprotkb/P93047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P93047-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKNMKAYNKKLEEGPKEDEE", "down_seq": "DKSVSEVNDEDDAEDGSEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser117" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P93047-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P93047-1.134.134", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93047-1.122.122", "start_pos": 122, "end_pos": 122, "uniprot_canonical_ac": "P93047-1", "length": 141, "uniprot_id": "HMGB3_ARATH", "protein_name": "High mobility group B protein 3", "refseq_ac": "NP_001031075", "refseq_name": "high mobility group B3", "gene_name": "HMGB3", "gene_names_uniprotkb": "HMGB3; F2D10; HMG1; HMGB2; HMGBETA2; NFD03; NFD3; high mobility group B3", "gene_names_refseq": "HMGB3; NFD03; NFD3; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR; high mobility group B3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93047", "url": "https://www.uniprot.org/uniprotkb/P93047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93047", "url": "https://www.uniprot.org/uniprotkb/P93047", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AYNKKLEEGPKEDEESDKSV", "down_seq": "EVNDEDDAEDGSEEEEDDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P93047", "url": "https://www.uniprot.org/uniprotkb/P93047" } ], "site_lbl": "Ser122" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P93047-1.117.117", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P93047-1.134.134", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93047-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "P93047-1", "length": 141, "uniprot_id": "HMGB3_ARATH", "protein_name": "High mobility group B protein 3", "refseq_ac": "NP_001031075", "refseq_name": "high mobility group B3", "gene_name": "HMGB3", "gene_names_uniprotkb": "HMGB3; F2D10; HMG1; HMGB2; HMGBETA2; NFD03; NFD3; high mobility group B3", "gene_names_refseq": "HMGB3; NFD03; NFD3; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR; high mobility group B3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93047", "url": "https://www.uniprot.org/uniprotkb/P93047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEESDKSVSEVNDEDDAEDG", "down_seq": "EEEEDDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser134" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P93047-1.117.117", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P93047-1.122.122", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93047-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "P93047-1", "length": 141, "uniprot_id": "HMGB3_ARATH", "protein_name": "High mobility group B protein 3", "refseq_ac": "NP_001031075", "refseq_name": "high mobility group B3", "gene_name": "HMGB3", "gene_names_uniprotkb": "HMGB3; F2D10; HMG1; HMGB2; HMGBETA2; NFD03; NFD3; high mobility group B3", "gene_names_refseq": "HMGB3; NFD03; NFD3; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR; high mobility group B3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93047", "url": "https://www.uniprot.org/uniprotkb/P93047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P93047-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] } ], "crossref": [ { "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EHPKNKSVAAVGKAGGEKWK", "down_seq": "LSDSEKAPYVAKADKRKVEY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ], "site_lbl": "Ser76" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P93047-1.78.78", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93047-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "P93047-1", "length": 141, "uniprot_id": "HMGB3_ARATH", "protein_name": "High mobility group B protein 3", "refseq_ac": "NP_001031075", "refseq_name": "high mobility group B3", "gene_name": "HMGB3", "gene_names_uniprotkb": "HMGB3; F2D10; HMG1; HMGB2; HMGBETA2; NFD03; NFD3; high mobility group B3", "gene_names_refseq": "HMGB3; NFD03; NFD3; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR; high mobility group B3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93047", "url": "https://www.uniprot.org/uniprotkb/P93047" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P93047-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKNKSVAAVGKAGGEKWKSL", "down_seq": "DSEKAPYVAKADKRKVEYEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93047", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93047" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser78" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P93047-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQF4-1.764.764", "start_pos": 764, "end_pos": 764, "uniprot_canonical_ac": "Q0WQF4-1", "length": 828, "uniprot_id": "VP53A_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 53 A", "refseq_ac": "NP_001185188", "refseq_name": "Membrane trafficking VPS53 family protein", "gene_name": "HIT1; VPS53", "gene_names_uniprotkb": "HIT1; VPS53; ATVPS53; F11F12.15; F17J6.4; HEAT-INTOLERANT 1; HIT1; VPS53", "gene_names_refseq": "ARABIDOPSIS THALIANA VPS53 HOMOLOG; ATVPS53; HEAT-INTOLERANT 1; HIT1; VPS53", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KHGPGFTQQSVAAAMPQPMP", "down_seq": "PPAPPLAITNPATAAGFIAN", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr764", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "764", "end_pos": "764" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "393", "end_pos": "393" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "630", "end_pos": "630" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WQF4-1.393.393", "start_pos": 393, "end_pos": 393, "uniprot_canonical_ac": "Q0WQF4-1", "length": 828, "uniprot_id": "VP53A_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 53 A", "refseq_ac": "NP_001185188", "refseq_name": "Membrane trafficking VPS53 family protein", "gene_name": "HIT1; VPS53", "gene_names_uniprotkb": "HIT1; VPS53; ATVPS53; F11F12.15; F17J6.4; HEAT-INTOLERANT 1; HIT1; VPS53", "gene_names_refseq": "ARABIDOPSIS THALIANA VPS53 HOMOLOG; ATVPS53; HEAT-INTOLERANT 1; HIT1; VPS53", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis hit1-1 mutant has a plasma membrane profile distinct from that of wild-type plants at optimal growing temperature.", "journal": "Plant signaling & behavior", "date": "2011-08", "authors": "Wang Lian-Chin, Chang Kai-Yu, Ke Yi-Ting, Huang Hao-Yu, Wu Shaw-Jye", "evidence": [ { "database": "UniProtKB", "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4" } ], "reference": [ { "type": "PubMed", "id": "21758000", "url": "https://glygen.org/publication/PubMed/21758000" } ] }, { "title": "Mutation in a homolog of yeast Vps53p accounts for the heat and osmotic hypersensitive phenotypes in Arabidopsis hit1-1 mutant.", "journal": "Planta", "date": "2006-07", "authors": "Lee Chai-Fong, Pu Hsin-Yi, Wang Lian-Chin, Sayler Ronald J, Yeh Ching-Hui, Wu Shaw-Jye", "evidence": [ { "database": "UniProtKB", "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4" } ], "reference": [ { "type": "PubMed", "id": "16408208", "url": "https://glygen.org/publication/PubMed/16408208" } ] }, { "title": "Involvement of the Arabidopsis HIT1/AtVPS53 tethering protein homologue in the acclimation of the plasma membrane to heat stress.", "journal": "Journal of experimental botany", "date": "2011-06", "authors": "Wang Lian-Chin, Tsai Ming-Chieh, Chang Kai-Yu, Fan Yu-Shan, Yeh Ching-Hui, Wu Shaw-Jye", "evidence": [ { "database": "UniProtKB", "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4" } ], "reference": [ { "type": "PubMed", "id": "21398432", "url": "https://glygen.org/publication/PubMed/21398432" } ] } ], "crossref": [ { "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21758000", "url": "https://glygen.org/publication/PubMed/21758000", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16408208", "url": "https://glygen.org/publication/PubMed/16408208", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21398432", "url": "https://glygen.org/publication/PubMed/21398432", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTGNKDLSVTGAGFNFRGMI", "down_seq": "SCFEPHLTPYIELEEKTLMD", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "Y", "comment": "In hit1-1; reduced tolerance to both heat and water stress, lethal at 37 degrees Celsius. Altered vesicle trafficking leading in changes in the plasma membrane components. Less stable plasma membrane under heat stress conditions, leading to heat intolerance; this sensitivity to heat depends more of the duration than of the intensity of the stress.", "evidence": [ { "database": "UniProtKB", "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4" }, { "database": "PubMed", "id": "21758000", "url": "https://glygen.org/publication/PubMed/21758000" }, { "database": "PubMed", "id": "16408208", "url": "https://glygen.org/publication/PubMed/16408208" }, { "database": "PubMed", "id": "21398432", "url": "https://glygen.org/publication/PubMed/21398432" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "764", "end_pos": "764" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "393", "end_pos": "393" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "630", "end_pos": "630" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQF4-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "Q0WQF4-1", "length": 828, "uniprot_id": "VP53A_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 53 A", "refseq_ac": "NP_001185188", "refseq_name": "Membrane trafficking VPS53 family protein", "gene_name": "HIT1; VPS53", "gene_names_uniprotkb": "HIT1; VPS53; ATVPS53; F11F12.15; F17J6.4; HEAT-INTOLERANT 1; HIT1; VPS53", "gene_names_refseq": "ARABIDOPSIS THALIANA VPS53 HOMOLOG; ATVPS53; HEAT-INTOLERANT 1; HIT1; VPS53", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WQF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF4" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q0WQF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TALHRLTMLVSAVEQLQVMA", "down_seq": "KRQYKEAAAQLEAVNQLCNH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF4" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser129" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "764", "end_pos": "764" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "393", "end_pos": "393" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "630", "end_pos": "630" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQF4-1.630.630", "start_pos": 630, "end_pos": 630, "uniprot_canonical_ac": "Q0WQF4-1", "length": 828, "uniprot_id": "VP53A_ARATH", "protein_name": "Vacuolar protein sorting-associated protein 53 A", "refseq_ac": "NP_001185188", "refseq_name": "Membrane trafficking VPS53 family protein", "gene_name": "HIT1; VPS53", "gene_names_uniprotkb": "HIT1; VPS53; ATVPS53; F11F12.15; F17J6.4; HEAT-INTOLERANT 1; HIT1; VPS53", "gene_names_refseq": "ARABIDOPSIS THALIANA VPS53 HOMOLOG; ATVPS53; HEAT-INTOLERANT 1; HIT1; VPS53", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQF4", "url": "https://www.uniprot.org/uniprotkb/Q0WQF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WQF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q0WQF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLGKLLTPVYFQFFLDKLAS", "down_seq": "LGPRFYANIFRCKQLSETGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQF4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQF4" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser630" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "764", "end_pos": "764" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "393", "end_pos": "393" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "630", "end_pos": "630" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NB-LRR protein SUMM2.", "journal": "Cell host & microbe", "date": "2012-03-15", "authors": "Zhang Zhibin, Wu Yaling, Gao Minghui, Zhang Jie, Kong Qing, Liu Yanan, Ba Hongping, Zhou Jianmin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "reference": [ { "type": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "crossref": [ { "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "SQGDFDTVTLATPIARIEEM", "down_seq": "IQPTIVGQETMLERVWTRLT", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "In summ2-7; suppresses the extreme dwarfism and autoimmune phenotype of the double mutant mkk1 and mkk2.", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" }, { "database": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NB-LRR protein SUMM2.", "journal": "Cell host & microbe", "date": "2012-03-15", "authors": "Zhang Zhibin, Wu Yaling, Gao Minghui, Zhang Jie, Kong Qing, Liu Yanan, Ba Hongping, Zhou Jianmin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "reference": [ { "type": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "crossref": [ { "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "RVWTRLTEDGDEIVGLYGMG", "down_seq": "VGKTTLLTRINNKFSEKCSG", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In summ2-2; suppresses the extreme dwarfism and autoimmune phenotype of the double mutant mkk1 and mkk2.", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" }, { "database": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NB-LRR protein SUMM2.", "journal": "Cell host & microbe", "date": "2012-03-15", "authors": "Zhang Zhibin, Wu Yaling, Gao Minghui, Zhang Jie, Kong Qing, Liu Yanan, Ba Hongping, Zhou Jianmin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "reference": [ { "type": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "crossref": [ { "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "GGEEWDNVNENQRALDIYNV", "down_seq": "GKQKFVLLLDDIWEKVNLEV", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "S", "comment": "In summ2-1; suppresses the extreme dwarfism and autoimmune phenotype of the double mutant mkk1 and mkk2.", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" }, { "database": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NB-LRR protein SUMM2.", "journal": "Cell host & microbe", "date": "2012-03-15", "authors": "Zhang Zhibin, Wu Yaling, Gao Minghui, Zhang Jie, Kong Qing, Liu Yanan, Ba Hongping, Zhou Jianmin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "reference": [ { "type": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "crossref": [ { "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "M", "down_seq": "ACLTLSFSCDEVVNQISQGL", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "In summ2-5; suppresses the extreme dwarfism and autoimmune phenotype of the double mutant mkk1 and mkk2.", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" }, { "database": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NB-LRR protein SUMM2.", "journal": "Cell host & microbe", "date": "2012-03-15", "authors": "Zhang Zhibin, Wu Yaling, Gao Minghui, Zhang Jie, Kong Qing, Liu Yanan, Ba Hongping, Zhou Jianmin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "reference": [ { "type": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "crossref": [ { "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "CKVVFTTRSRDVCGRMRVDD", "down_seq": "MEVSCLEPNEAWELFQMKVG", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "In summ2-3; suppresses the extreme dwarfism and autoimmune phenotype of the double mutant mkk1 and mkk2.", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" }, { "database": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NB-LRR protein SUMM2.", "journal": "Cell host & microbe", "date": "2012-03-15", "authors": "Zhang Zhibin, Wu Yaling, Gao Minghui, Zhang Jie, Kong Qing, Liu Yanan, Ba Hongping, Zhou Jianmin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "reference": [ { "type": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "crossref": [ { "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVVNQISQGLCINVGYICEL", "down_seq": "KNVVAMKKDMEVLKKKRDDV", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "F", "comment": "In summ2-6; suppresses the extreme dwarfism and autoimmune phenotype of the double mutant mkk1 and mkk2.", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" }, { "database": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.478.478", "start_pos": 478, "end_pos": 478, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NB-LRR protein SUMM2.", "journal": "Cell host & microbe", "date": "2012-03-15", "authors": "Zhang Zhibin, Wu Yaling, Gao Minghui, Zhang Jie, Kong Qing, Liu Yanan, Ba Hongping, Zhou Jianmin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "reference": [ { "type": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "crossref": [ { "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "LVRACLLLEEAINKEQVKMH", "down_seq": "VVREMALWIASDLGEHKERC", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "V", "comment": "Constitutively active protein that induces pathogen-independent hypersensitive response.", "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" }, { "database": "PubMed", "id": "22423965", "url": "https://glygen.org/publication/PubMed/22423965" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P60838", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P60838" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "P60838", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P60838", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ELQRLCLFGFCSKNVKMSYL", "down_seq": "GKRVVLMLKEIESLSSQGDF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P60838", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P60838" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Tyr116" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P60838-1.667.667", "start_pos": 667, "end_pos": 667, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P60838", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P60838", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDMSLVEELQLLEHLEVLNI", "down_seq": "IKSSLVVEKLLNAPRLVKCL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P60838", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P60838" } ], "site_lbl": "Ser667" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P60838-1.732.732", "start_pos": 732, "end_pos": 732, "uniprot_canonical_ac": "P60838-1", "length": 894, "uniprot_id": "SUMM2_ARATH", "protein_name": "Disease resistance protein SUMM2", "refseq_ac": "NP_172692", "refseq_name": "LRR and NB-ARC domains-containing disease resistance protein", "gene_name": "SUMM2", "gene_names_uniprotkb": "SUMM2; F5O11.34; F5O11.3; F5O11_34; F5O11_3; suppressor of mkk1 mkk2 2", "gene_names_refseq": "F5O11.34; F5O11_34; SUMM2; suppressor of mkk1 mkk2 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P60838", "url": "https://www.uniprot.org/uniprotkb/P60838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P60838", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P60838" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P60838", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P60838", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NKVIIRKCGMCEIKIERKTL", "down_seq": "LSSNRSPKTQFLHNLSTVHI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P60838", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P60838" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser732" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "478", "end_pos": "478" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "732", "end_pos": "732" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1KPV0-1.778.778", "start_pos": 778, "end_pos": 778, "uniprot_canonical_ac": "Q1KPV0-1", "length": 912, "uniprot_id": "FZL_ARATH", "protein_name": "Probable transmembrane GTPase FZO-like, chloroplastic", "refseq_ac": "NP_001077452", "refseq_name": "FZO-like protein", "gene_name": "FZL", "gene_names_uniprotkb": "FZL; F10O3.1; F10O3_1; F15K9.23; FZO-like", "gene_names_refseq": "F10O3.1; F10O3_1; FZL; FZO-like", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1KPV0", "url": "https://www.uniprot.org/uniprotkb/Q1KPV0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LSAGTTSKRLEQDIREVFFV", "down_seq": "VGGLGAAGLSASLLTSVLPT", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr778", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "778", "end_pos": "778" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "362", "end_pos": "362" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1KPV0-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "Q1KPV0-1", "length": 912, "uniprot_id": "FZL_ARATH", "protein_name": "Probable transmembrane GTPase FZO-like, chloroplastic", "refseq_ac": "NP_001077452", "refseq_name": "FZO-like protein", "gene_name": "FZL", "gene_names_uniprotkb": "FZL; F10O3.1; F10O3_1; F15K9.23; FZO-like", "gene_names_refseq": "F10O3.1; F10O3_1; FZL; FZO-like", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1KPV0", "url": "https://www.uniprot.org/uniprotkb/Q1KPV0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "FZL, an FZO-like protein in plants, is a determinant of thylakoid and chloroplast morphology.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006-04-25", "authors": "Gao Hongbo, Sage Tammy L, Osteryoung Katherine W", "evidence": [ { "database": "UniProtKB", "id": "Q1KPV0", "url": "https://www.uniprot.org/uniprotkb/Q1KPV0" } ], "reference": [ { "type": "PubMed", "id": "16617119", "url": "https://glygen.org/publication/PubMed/16617119" } ] } ], "crossref": [ { "id": "Q1KPV0", "url": "https://www.uniprot.org/uniprotkb/Q1KPV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16617119", "url": "https://glygen.org/publication/PubMed/16617119", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "AVSRIDEPFLMVIVGEFNSG", "down_seq": "STVINALLGKRYLKEGVVPT", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "M", "comment": "Loss of function and no detection in punctate structures.", "evidence": [ { "database": "UniProtKB", "id": "Q1KPV0", "url": "https://www.uniprot.org/uniprotkb/Q1KPV0" }, { "database": "PubMed", "id": "16617119", "url": "https://glygen.org/publication/PubMed/16617119" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "778", "end_pos": "778" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "362", "end_pos": "362" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1KPV0-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q1KPV0-1", "length": 912, "uniprot_id": "FZL_ARATH", "protein_name": "Probable transmembrane GTPase FZO-like, chloroplastic", "refseq_ac": "NP_001077452", "refseq_name": "FZO-like protein", "gene_name": "FZL", "gene_names_uniprotkb": "FZL; F10O3.1; F10O3_1; F15K9.23; FZO-like", "gene_names_refseq": "F10O3.1; F10O3_1; FZL; FZO-like", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1KPV0", "url": "https://www.uniprot.org/uniprotkb/Q1KPV0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q1KPV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1KPV0" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q1KPV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1KPV0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRTLI", "down_seq": "HRQCVTSPFLISAASPPFPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q1KPV0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1KPV0" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "778", "end_pos": "778" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "362", "end_pos": "362" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92949-1.641.641", "start_pos": 641, "end_pos": 641, "uniprot_canonical_ac": "P92949-1", "length": 725, "uniprot_id": "FRO2_ARATH", "protein_name": "Ferric reduction oxidase 2", "refseq_ac": "NP_171664", "refseq_name": "ferric reduction oxidase 2", "gene_name": "FRO2", "gene_names_uniprotkb": "FRO2; ATFRO2; F22L4.12; F22L4_12; FERRIC REDUCTION OXIDASE 2; FRD1; ferric reduction oxidase 2", "gene_names_refseq": "ATFRO2; F22L4.12; F22L4_12; FERRIC CHELATE REDUCTASE DEFECTIVE 1; FERRIC REDUCTION OXIDASE 2; FRD1; FRO2; ferric reduction oxidase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KKKYGKVESKQVQNVDRPSP", "down_seq": "SSPTSSWGYNSLREIESTPQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr641", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" } ], "site_lbl": "Thr641" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "641", "end_pos": "641" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "384", "end_pos": "384" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "647", "end_pos": "647" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P92949-1.639.639", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92949-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92949-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P92949-1.647.647", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92949-1.384.384", "start_pos": 384, "end_pos": 384, "uniprot_canonical_ac": "P92949-1", "length": 725, "uniprot_id": "FRO2_ARATH", "protein_name": "Ferric reduction oxidase 2", "refseq_ac": "NP_171664", "refseq_name": "ferric reduction oxidase 2", "gene_name": "FRO2", "gene_names_uniprotkb": "FRO2; ATFRO2; F22L4.12; F22L4_12; FERRIC REDUCTION OXIDASE 2; FRD1; ferric reduction oxidase 2", "gene_names_refseq": "ATFRO2; F22L4.12; F22L4_12; FERRIC CHELATE REDUCTASE DEFECTIVE 1; FERRIC REDUCTION OXIDASE 2; FRD1; FRO2; ferric reduction oxidase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A ferric-chelate reductase for iron uptake from soils.", "journal": "Nature", "date": "1999-02-25", "authors": "Robinson N J, Procter C M, Connolly E L, Guerinot M L", "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "reference": [ { "type": "PubMed", "id": "10067892", "url": "https://glygen.org/publication/PubMed/10067892" } ] } ], "crossref": [ { "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10067892", "url": "https://glygen.org/publication/PubMed/10067892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PTSIMFVNIPSISKLQWHPF", "down_seq": "ITSSSKLEPEKLSIVIKKEG", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "M", "comment": "In frd1-3; loss of induced ferric-chelate reductase activity.", "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" }, { "database": "PubMed", "id": "10067892", "url": "https://glygen.org/publication/PubMed/10067892" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "641", "end_pos": "641" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "384", "end_pos": "384" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "647", "end_pos": "647" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92949-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "P92949-1", "length": 725, "uniprot_id": "FRO2_ARATH", "protein_name": "Ferric reduction oxidase 2", "refseq_ac": "NP_171664", "refseq_name": "ferric reduction oxidase 2", "gene_name": "FRO2", "gene_names_uniprotkb": "FRO2; ATFRO2; F22L4.12; F22L4_12; FERRIC REDUCTION OXIDASE 2; FRD1; ferric reduction oxidase 2", "gene_names_refseq": "ATFRO2; F22L4.12; F22L4_12; FERRIC CHELATE REDUCTASE DEFECTIVE 1; FERRIC REDUCTION OXIDASE 2; FRD1; FRO2; ferric reduction oxidase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSIVIKKEGKWSTKLHQRLS", "down_seq": "SDQIDRLAVSVEGPYGPASA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" } ], "site_lbl": "Ser416" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "641", "end_pos": "641" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "384", "end_pos": "384" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "647", "end_pos": "647" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92949-1.467.467", "start_pos": 467, "end_pos": 467, "uniprot_canonical_ac": "P92949-1", "length": 725, "uniprot_id": "FRO2_ARATH", "protein_name": "Ferric reduction oxidase 2", "refseq_ac": "NP_171664", "refseq_name": "ferric reduction oxidase 2", "gene_name": "FRO2", "gene_names_uniprotkb": "FRO2; ATFRO2; F22L4.12; F22L4_12; FERRIC REDUCTION OXIDASE 2; FRD1; ferric reduction oxidase 2", "gene_names_refseq": "ATFRO2; F22L4.12; F22L4_12; FERRIC CHELATE REDUCTASE DEFECTIVE 1; FERRIC REDUCTION OXIDASE 2; FRD1; FRO2; ferric reduction oxidase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VCGGSGITPFISVIRDLIAT", "down_seq": "QKETCKIPKITLICAFKKSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser467" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "641", "end_pos": "641" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "384", "end_pos": "384" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "647", "end_pos": "647" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92949-1.639.639", "start_pos": 639, "end_pos": 639, "uniprot_canonical_ac": "P92949-1", "length": 725, "uniprot_id": "FRO2_ARATH", "protein_name": "Ferric reduction oxidase 2", "refseq_ac": "NP_171664", "refseq_name": "ferric reduction oxidase 2", "gene_name": "FRO2", "gene_names_uniprotkb": "FRO2; ATFRO2; F22L4.12; F22L4_12; FERRIC REDUCTION OXIDASE 2; FRD1; ferric reduction oxidase 2", "gene_names_refseq": "ATFRO2; F22L4.12; F22L4_12; FERRIC CHELATE REDUCTASE DEFECTIVE 1; FERRIC REDUCTION OXIDASE 2; FRD1; FRO2; ferric reduction oxidase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WNKKKYGKVESKQVQNVDRP", "down_seq": "PTSSPTSSWGYNSLREIEST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser639" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "641", "end_pos": "641" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "384", "end_pos": "384" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "647", "end_pos": "647" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P92949-1.641.641", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92949-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P92949-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92949-1.647.647", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92949-1.643.643", "start_pos": 643, "end_pos": 643, "uniprot_canonical_ac": "P92949-1", "length": 725, "uniprot_id": "FRO2_ARATH", "protein_name": "Ferric reduction oxidase 2", "refseq_ac": "NP_171664", "refseq_name": "ferric reduction oxidase 2", "gene_name": "FRO2", "gene_names_uniprotkb": "FRO2; ATFRO2; F22L4.12; F22L4_12; FERRIC REDUCTION OXIDASE 2; FRD1; ferric reduction oxidase 2", "gene_names_refseq": "ATFRO2; F22L4.12; F22L4_12; FERRIC CHELATE REDUCTASE DEFECTIVE 1; FERRIC REDUCTION OXIDASE 2; FRD1; FRO2; ferric reduction oxidase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KYGKVESKQVQNVDRPSPTS", "down_seq": "PTSSWGYNSLREIESTPQES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser643" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "641", "end_pos": "641" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "384", "end_pos": "384" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "647", "end_pos": "647" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P92949-1.639.639", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92949-1.641.641", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P92949-1.646.646", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92949-1.647.647", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92949-1.646.646", "start_pos": 646, "end_pos": 646, "uniprot_canonical_ac": "P92949-1", "length": 725, "uniprot_id": "FRO2_ARATH", "protein_name": "Ferric reduction oxidase 2", "refseq_ac": "NP_171664", "refseq_name": "ferric reduction oxidase 2", "gene_name": "FRO2", "gene_names_uniprotkb": "FRO2; ATFRO2; F22L4.12; F22L4_12; FERRIC REDUCTION OXIDASE 2; FRD1; ferric reduction oxidase 2", "gene_names_refseq": "ATFRO2; F22L4.12; F22L4_12; FERRIC CHELATE REDUCTASE DEFECTIVE 1; FERRIC REDUCTION OXIDASE 2; FRD1; FRO2; ferric reduction oxidase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVESKQVQNVDRPSPTSSPT", "down_seq": "SWGYNSLREIESTPQESLVQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" } ], "site_lbl": "Ser646" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "641", "end_pos": "641" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "384", "end_pos": "384" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "647", "end_pos": "647" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P92949-1.639.639", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92949-1.641.641", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P92949-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P92949-1.647.647", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92949-1.647.647", "start_pos": 647, "end_pos": 647, "uniprot_canonical_ac": "P92949-1", "length": 725, "uniprot_id": "FRO2_ARATH", "protein_name": "Ferric reduction oxidase 2", "refseq_ac": "NP_171664", "refseq_name": "ferric reduction oxidase 2", "gene_name": "FRO2", "gene_names_uniprotkb": "FRO2; ATFRO2; F22L4.12; F22L4_12; FERRIC REDUCTION OXIDASE 2; FRD1; ferric reduction oxidase 2", "gene_names_refseq": "ATFRO2; F22L4.12; F22L4_12; FERRIC CHELATE REDUCTASE DEFECTIVE 1; FERRIC REDUCTION OXIDASE 2; FRD1; FRO2; ferric reduction oxidase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92949", "url": "https://www.uniprot.org/uniprotkb/P92949" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VESKQVQNVDRPSPTSSPTS", "down_seq": "WGYNSLREIESTPQESLVQR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92949", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92949" } ], "site_lbl": "Ser647" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "641", "end_pos": "641" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "384", "end_pos": "384" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "416", "end_pos": "416" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "646", "end_pos": "646" }, { "start_pos": "647", "end_pos": "647" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P92949-1.639.639", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P92949-1.641.641", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P92949-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P92949-1.646.646", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WVE8-1.586.586", "start_pos": 586, "end_pos": 586, "uniprot_canonical_ac": "Q0WVE8-1", "length": 637, "uniprot_id": "RP6L1_ARATH", "protein_name": "Protein RRP6-like 1", "refseq_ac": "NP_175846", "refseq_name": "Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein", "gene_name": "RRP6L1", "gene_names_uniprotkb": "RRP6L1; F20D21.26; F20D21_26", "gene_names_refseq": "F20D21.26; F20D21_26", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WVE8", "url": "https://www.uniprot.org/uniprotkb/Q0WVE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WVE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVE8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WVE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVE8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EQSTKAADALDRVSETPSKG", "down_seq": "PSLTQKPKTCNTEVIVLDDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WVE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WVE8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser586" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "586", "end_pos": "586" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "C0SUU6-1.161.161", "start_pos": 161, "end_pos": 161, "uniprot_canonical_ac": "C0SUU6-1", "length": 352, "uniprot_id": "STKLA_ARATH", "protein_name": "Probable transcription factor At1g11510", "refseq_ac": "", "refseq_name": "", "gene_name": "T23J18.17; T23J18_17", "gene_names_uniprotkb": "T23J18.17; T23J18_17", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "C0SUU6", "url": "https://www.uniprot.org/uniprotkb/C0SUU6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LWTEDDEIVVLQGLIDDKKD", "down_seq": "GVSNTNKVYELVKKSISFDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr161" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "170", "end_pos": "170" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "C0SUU6-1.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "C0SUU6-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "C0SUU6-1.170.170", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "C0SUU6-1.164.164", "start_pos": 164, "end_pos": 164, "uniprot_canonical_ac": "C0SUU6-1", "length": 352, "uniprot_id": "STKLA_ARATH", "protein_name": "Probable transcription factor At1g11510", "refseq_ac": "", "refseq_name": "", "gene_name": "T23J18.17; T23J18_17", "gene_names_uniprotkb": "T23J18.17; T23J18_17", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "C0SUU6", "url": "https://www.uniprot.org/uniprotkb/C0SUU6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDDEIVVLQGLIDDKKDTGV", "down_seq": "NTNKVYELVKKSISFDVSKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser164" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "170", "end_pos": "170" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "C0SUU6-1.161.161", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "C0SUU6-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "C0SUU6-1.170.170", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "C0SUU6-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "C0SUU6-1", "length": 352, "uniprot_id": "STKLA_ARATH", "protein_name": "Probable transcription factor At1g11510", "refseq_ac": "", "refseq_name": "", "gene_name": "T23J18.17; T23J18_17", "gene_names_uniprotkb": "T23J18.17; T23J18_17", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "C0SUU6", "url": "https://www.uniprot.org/uniprotkb/C0SUU6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DEIVVLQGLIDDKKDTGVSN", "down_seq": "NKVYELVKKSISFDVSKNQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr166" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "170", "end_pos": "170" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "C0SUU6-1.161.161", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "C0SUU6-1.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "C0SUU6-1.170.170", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "C0SUU6-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "C0SUU6-1", "length": 352, "uniprot_id": "STKLA_ARATH", "protein_name": "Probable transcription factor At1g11510", "refseq_ac": "", "refseq_name": "", "gene_name": "T23J18.17; T23J18_17", "gene_names_uniprotkb": "T23J18.17; T23J18_17", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "C0SUU6", "url": "https://www.uniprot.org/uniprotkb/C0SUU6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VLQGLIDDKKDTGVSNTNKV", "down_seq": "ELVKKSISFDVSKNQLMEKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "C0SUU6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/C0SUU6" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr170" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "170", "end_pos": "170" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "C0SUU6-1.161.161", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "C0SUU6-1.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "C0SUU6-1.166.166", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL80-1.1010.1010", "start_pos": 1010, "end_pos": 1010, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ESARFEVLNSEYSAVLLGNE", "down_seq": "ATIHIDAVIDPLSPTGQKLA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1010", "evidence": [ { "id": "Q0WL80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WL80#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL80-1.1526.1526", "start_pos": 1526, "end_pos": 1526, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HTVPIFSLPQEWLWCESWCG", "down_seq": "ATKAKARTIDLCNNPMTKEP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1526", "evidence": [ { "id": "Q0WL80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WL80#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL80-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VLPLGCEGKTRPCGAIGARD", "down_seq": "VSLAGYGVELALKNMEYKAM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn249", "evidence": [ { "id": "Q0WL80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WL80#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL80-1.373.373", "start_pos": 373, "end_pos": 373, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MQEINQNFPSVVSSLSRMKL", "down_seq": "ESIKDEILSNQRMVPPGKAL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn373", "evidence": [ { "id": "Q0WL80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WL80#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL80-1.1309.1309", "start_pos": 1309, "end_pos": 1309, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Allele-specific suppression of a defective brassinosteroid receptor reveals a physiological role of UGGT in ER quality control.", "journal": "Molecular cell", "date": "2007-06-22", "authors": "Jin Hua, Yan Zhenyan, Nam Kyoung Hee, Li Jianming", "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "reference": [ { "type": "PubMed", "id": "17588517", "url": "https://glygen.org/publication/PubMed/17588517" } ] } ], "crossref": [ { "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17588517", "url": "https://glygen.org/publication/PubMed/17588517", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "KEHEKGGRQGKTINIFSIAS", "down_seq": "HLYERFLKIMILSVLKNTNR", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In ebs1-4; loss of function.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" }, { "database": "PubMed", "id": "17588517", "url": "https://glygen.org/publication/PubMed/17588517" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL80-1.1497.1497", "start_pos": 1497, "end_pos": 1497, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Receptor quality control in the endoplasmic reticulum for plant innate immunity.", "journal": "The EMBO journal", "date": "2009-11-04", "authors": "Saijo Yusuke, Tintor Nico, Lu Xunli, Rauf Philipp, Pajerowska-Mukhtar Karolina, H\u00e4weker Heidrun, Dong Xinnian, Robatzek Silke, Schulze-Lefert Paul", "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "reference": [ { "type": "PubMed", "id": "19763087", "url": "https://glygen.org/publication/PubMed/19763087" } ] } ], "crossref": [ { "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19763087", "url": "https://glygen.org/publication/PubMed/19763087", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "DNLRVFYETLSKDPNSLSNL", "down_seq": "QDLPNYAQHTVPIFSLPQEW", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "In psl2-1;; loss of response to the PAMP elf18.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" }, { "database": "PubMed", "id": "19763087", "url": "https://glygen.org/publication/PubMed/19763087" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0WL80-1.1500.1500", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL80-1.1500.1500", "start_pos": 1500, "end_pos": 1500, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Allele-specific suppression of a defective brassinosteroid receptor reveals a physiological role of UGGT in ER quality control.", "journal": "Molecular cell", "date": "2007-06-22", "authors": "Jin Hua, Yan Zhenyan, Nam Kyoung Hee, Li Jianming", "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "reference": [ { "type": "PubMed", "id": "17588517", "url": "https://glygen.org/publication/PubMed/17588517" } ] } ], "crossref": [ { "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17588517", "url": "https://glygen.org/publication/PubMed/17588517", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "RVFYETLSKDPNSLSNLDQD", "down_seq": "PNYAQHTVPIFSLPQEWLWC", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "F", "comment": "In ebs1-3; loss of function.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" }, { "database": "PubMed", "id": "17588517", "url": "https://glygen.org/publication/PubMed/17588517" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WL80-1.1497.1497", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL80-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Receptor quality control in the endoplasmic reticulum for plant innate immunity.", "journal": "The EMBO journal", "date": "2009-11-04", "authors": "Saijo Yusuke, Tintor Nico, Lu Xunli, Rauf Philipp, Pajerowska-Mukhtar Karolina, H\u00e4weker Heidrun, Dong Xinnian, Robatzek Silke, Schulze-Lefert Paul", "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "reference": [ { "type": "PubMed", "id": "19763087", "url": "https://glygen.org/publication/PubMed/19763087" } ] } ], "crossref": [ { "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19763087", "url": "https://glygen.org/publication/PubMed/19763087", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "EDLSQDVRGFIFSKILDRKP", "down_seq": "LRSEVMAFRDYLLSSTVSDT", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In psl2-2; loss of response to the PAMP elf18.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" }, { "database": "PubMed", "id": "19763087", "url": "https://glygen.org/publication/PubMed/19763087" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL80-1.508.508", "start_pos": 508, "end_pos": 508, "uniprot_canonical_ac": "Q0WL80-1", "length": 1613, "uniprot_id": "UGGG_ARATH", "protein_name": "UDP-glucose:glycoprotein glucosyltransferase", "refseq_ac": "NP_001185370", "refseq_name": "EMS-MUTAGENIZED BRI1 SUPPRESSOR 1", "gene_name": "EBS1; UGGT", "gene_names_uniprotkb": "EBS1; UGGT; EBS1; F23N20; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UGGT", "gene_names_refseq": "EBS1; EMS-mutagenized bri1 suppressor 1; F3I17.13; F3I17_13; PRIORITY IN SWEET LIFE 2; PSL2; UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE; UGGT", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL80", "url": "https://www.uniprot.org/uniprotkb/Q0WL80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WL80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL80" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] } ], "crossref": [ { "id": "Q0WL80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL80", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GQLRYIRKNLFHAVYVIDPA", "down_seq": "ACGLESIETLRSLYENQLPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL80", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL80" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Thr508" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1010", "end_pos": "1010" }, { "start_pos": "1526", "end_pos": "1526" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "373", "end_pos": "373" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1497", "end_pos": "1497" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WX00-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "Q0WX00-1", "length": 460, "uniprot_id": "RNG1B_ARATH", "protein_name": "Putative E3 ubiquitin-protein ligase RING1b", "refseq_ac": "NP_171873", "refseq_name": "RING 1B", "gene_name": "RING1B", "gene_names_uniprotkb": "RING1B; ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.30; F21M11.32; F21M11_32; RF5; RING 1B", "gene_names_refseq": "ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.32; F21M11_32; RING 1B; RING1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WX00", "url": "https://www.uniprot.org/uniprotkb/Q0WX00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRSGGGSRRRRNCRNIEQDT", "down_seq": "EANDDDDQNKRGKDSSSDEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser242" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "278", "end_pos": "278" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WX00-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "Q0WX00-1", "length": 460, "uniprot_id": "RNG1B_ARATH", "protein_name": "Putative E3 ubiquitin-protein ligase RING1b", "refseq_ac": "NP_171873", "refseq_name": "RING 1B", "gene_name": "RING1B", "gene_names_uniprotkb": "RING1B; ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.30; F21M11.32; F21M11_32; RF5; RING 1B", "gene_names_refseq": "ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.32; F21M11_32; RING 1B; RING1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WX00", "url": "https://www.uniprot.org/uniprotkb/Q0WX00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RGKDSSSDEPCERQRKKRSA", "down_seq": "QPSSSNANNNDNCAGNGTEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr273" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "278", "end_pos": "278" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0WX00-1.276.276", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WX00-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WX00-1.278.278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WX00-1.276.276", "start_pos": 276, "end_pos": 276, "uniprot_canonical_ac": "Q0WX00-1", "length": 460, "uniprot_id": "RNG1B_ARATH", "protein_name": "Putative E3 ubiquitin-protein ligase RING1b", "refseq_ac": "NP_171873", "refseq_name": "RING 1B", "gene_name": "RING1B", "gene_names_uniprotkb": "RING1B; ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.30; F21M11.32; F21M11_32; RF5; RING 1B", "gene_names_refseq": "ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.32; F21M11_32; RING 1B; RING1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WX00", "url": "https://www.uniprot.org/uniprotkb/Q0WX00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSSSDEPCERQRKKRSATQP", "down_seq": "SSNANNNDNCAGNGTEQTHQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser276" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "278", "end_pos": "278" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WX00-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WX00-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WX00-1.278.278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WX00-1.277.277", "start_pos": 277, "end_pos": 277, "uniprot_canonical_ac": "Q0WX00-1", "length": 460, "uniprot_id": "RNG1B_ARATH", "protein_name": "Putative E3 ubiquitin-protein ligase RING1b", "refseq_ac": "NP_171873", "refseq_name": "RING 1B", "gene_name": "RING1B", "gene_names_uniprotkb": "RING1B; ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.30; F21M11.32; F21M11_32; RF5; RING 1B", "gene_names_refseq": "ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.32; F21M11_32; RING 1B; RING1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WX00", "url": "https://www.uniprot.org/uniprotkb/Q0WX00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSDEPCERQRKKRSATQPS", "down_seq": "SNANNNDNCAGNGTEQTHQR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser277" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "278", "end_pos": "278" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WX00-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WX00-1.276.276", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WX00-1.278.278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WX00-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "Q0WX00-1", "length": 460, "uniprot_id": "RNG1B_ARATH", "protein_name": "Putative E3 ubiquitin-protein ligase RING1b", "refseq_ac": "NP_171873", "refseq_name": "RING 1B", "gene_name": "RING1B", "gene_names_uniprotkb": "RING1B; ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.30; F21M11.32; F21M11_32; RF5; RING 1B", "gene_names_refseq": "ARABIDOPSIS THALIANA RING 1B; ATRING1B; F21M11.32; F21M11_32; RING 1B; RING1B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WX00", "url": "https://www.uniprot.org/uniprotkb/Q0WX00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSDEPCERQRKKRSATQPSS", "down_seq": "NANNNDNCAGNGTEQTHQRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WX00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WX00" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser278" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "278", "end_pos": "278" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q0WX00-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WX00-1.276.276", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WX00-1.277.277", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E7D0-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSSSDPKPGPKPGPWPP", "down_seq": "PESAAMPPSSWAKKTGFRPK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr18", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E7D0-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GYSGLMSLILRLVNPVVVAP", "down_seq": "VAAVGLSFYSYGFPLVGKCL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr314", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3E7D0-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry.", "journal": "Molecular & cellular proteomics : MCP", "date": "2003-11", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "Q3E7D0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E7D0" } ], "reference": [ { "type": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206", "database": "PubMed", "categories": [ "Other" ] }, { "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q3E7D0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E7D0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESAAMPPSSWAKKTGFRPKF", "down_seq": "GETTATDSSSGQLSLPVRAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "PubMed", "id": "14506206", "url": "https://glygen.org/publication/PubMed/14506206" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q3E7D0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E7D0" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q3E7D0-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q3E7D0-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q3E7D0-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q3E7D0-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q3E7D0-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q3E7D0-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q3E7D0-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E7D0-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AMPPSSWAKKTGFRPKFSGE", "down_seq": "TATDSSSGQLSLPVRAKQQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr43" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q3E7D0-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q3E7D0-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q3E7D0-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q3E7D0-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q3E7D0-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q3E7D0-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q3E7D0-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E7D0-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MPPSSWAKKTGFRPKFSGET", "down_seq": "ATDSSSGQLSLPVRAKQQET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr44" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q3E7D0-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q3E7D0-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q3E7D0-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q3E7D0-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q3E7D0-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q3E7D0-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q3E7D0-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E7D0-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PSSWAKKTGFRPKFSGETTA", "down_seq": "DSSSGQLSLPVRAKQQETQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr46" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q3E7D0-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q3E7D0-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q3E7D0-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q3E7D0-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q3E7D0-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q3E7D0-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q3E7D0-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E7D0-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SWAKKTGFRPKFSGETTATD", "down_seq": "SSGQLSLPVRAKQQETQPDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser48" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q3E7D0-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q3E7D0-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q3E7D0-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q3E7D0-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q3E7D0-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q3E7D0-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q3E7D0-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E7D0-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WAKKTGFRPKFSGETTATDS", "down_seq": "SGQLSLPVRAKQQETQPDLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser49" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q3E7D0-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q3E7D0-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q3E7D0-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q3E7D0-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q3E7D0-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q3E7D0-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q3E7D0-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E7D0-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q3E7D0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E7D0" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q3E7D0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E7D0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKKTGFRPKFSGETTATDSS", "down_seq": "GQLSLPVRAKQQETQPDLEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q3E7D0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3E7D0" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser50" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q3E7D0-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q3E7D0-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q3E7D0-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q3E7D0-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q3E7D0-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q3E7D0-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q3E7D0-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E7D0-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "Q3E7D0-1", "length": 709, "uniprot_id": "NAT12_ARATH", "protein_name": "Nucleobase-ascorbate transporter 12", "refseq_ac": "NP_850108", "refseq_name": "nucleobase-ascorbate transporter 12", "gene_name": "NAT12", "gene_names_uniprotkb": "NAT12; ATNAT12; F15K20.9; F15K20_9", "gene_names_refseq": "ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12; ATNAT12; F15K20.9; F15K20_9; NAT12; nucleobase-ascorbate transporter 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q3E7D0", "url": "https://www.uniprot.org/uniprotkb/Q3E7D0" }, { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GFRPKFSGETTATDSSSGQL", "down_seq": "LPVRAKQQETQPDLEAGQTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MS07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MS07" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q3E7D0-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q3E7D0-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q3E7D0-1.44.44", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q3E7D0-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q3E7D0-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q3E7D0-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q3E7D0-1.50.50", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80719-1.101.101", "start_pos": 101, "end_pos": 101, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.", "journal": "The New phytologist", "date": "2022-07", "authors": "Li Xiaoyi, Xie Yiting, Zhang Qian, Hua Xinyue, Peng Lu, Li Kexuan, Yu Qin, Chen Yihong, Yao Huan, He Juan, Huang Yaling, Wang Ruolin, Wang Tao, Wang Jianmei, Li Xufeng, Yang Yi", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "reference": [ { "type": "PubMed", "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459" } ] } ], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "EGSYGRVYYGVLNNDLPSAI", "down_seq": "KLDSNKQPDNEFLAQVSMVS", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of kinase activity and altered interaction with CARK1 kinase-deficient mutant; when associated with A-208.", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" }, { "database": "PubMed", "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80719-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O80719-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80719-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.", "journal": "The New phytologist", "date": "2022-07", "authors": "Li Xiaoyi, Xie Yiting, Zhang Qian, Hua Xinyue, Peng Lu, Li Kexuan, Yu Qin, Chen Yihong, Yao Huan, He Juan, Huang Yaling, Wang Ruolin, Wang Tao, Wang Jianmei, Li Xufeng, Yang Yi", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "reference": [ { "type": "PubMed", "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459" } ] } ], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LEYLHEKANPHIIHRDIKSS", "down_seq": "VLLFEDDVAKIADFDLSNQA", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "A", "comment": "Reduced kinase activity. Loss of kinase activity and altered interaction with CARK1 kinase-deficient mutant; when associated with R-101.", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" }, { "database": "PubMed", "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80719-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80719-1.207.207", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O80719-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80719-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HDNFVQLLGYCVDGNSRILS", "down_seq": "EFANNGSLHDILHGRKGVKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Tyr145" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGLEYLHEKANPHIIHRDIK", "down_seq": "SNVLLFEDDVAKIADFDLSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Ser206" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80719-1.207.207", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80719-1.208.208", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O80719-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.207.207", "start_pos": 207, "end_pos": 207, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLEYLHEKANPHIIHRDIKS", "down_seq": "NVLLFEDDVAKIADFDLSNQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Ser207" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80719-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80719-1.208.208", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80719-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSSNVLLFEDDVAKIADFDL", "down_seq": "NQAPDMAARLHSTRVLGTFG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Ser225" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O80719-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O80719-1.207.207", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O80719-1.208.208", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O80719-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O80719-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80719-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKIADFDLSNQAPDMAARLH", "down_seq": "TRVLGTFGYHAPEYAMTGQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O80719-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80719-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80719-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O80719-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KIADFDLSNQAPDMAARLHS", "down_seq": "RVLGTFGYHAPEYAMTGQLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Thr238" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O80719-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80719-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80719-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O80719-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DLSNQAPDMAARLHSTRVLG", "down_seq": "FGYHAPEYAMTGQLNAKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Thr243" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80719-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80719-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80719-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80719-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MAARLHSTRVLGTFGYHAPE", "down_seq": "AMTGQLNAKSDVYSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Tyr251" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O80719-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O80719-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80719-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.290.290", "start_pos": 290, "end_pos": 290, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLELLTGRKPVDHRLPRGQQ", "down_seq": "LVTWATPKLSEDKVKQCVDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Ser290" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VVKLQPIEVPIIPFSELKEA", "down_seq": "DDFGSNSLIGEGSYGRVYYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Thr70" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O80719-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O80719-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O80719-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PIEVPIIPFSELKEATDDFG", "down_seq": "NSLIGEGSYGRVYYGVLNND", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Ser75" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O80719-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80719-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O80719-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSELKEATDDFGSNSLIGEG", "down_seq": "YGRVYYGVLNNDLPSAIKKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Ser83" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O80719-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80719-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80719-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80719-1.101.101", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80719-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "O80719-1", "length": 365, "uniprot_id": "CARK3_ARATH", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 3", "refseq_ac": "NP_001031552", "refseq_name": "Protein kinase superfamily protein", "gene_name": "CARK3; PTI1-4", "gene_names_uniprotkb": "CARK3; PTI1-4; F14M4.11; PTI1-4; Pto-interacting 1-4", "gene_names_refseq": "F14M4.11; PTI1-4; Pto-interacting 1-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ATDDFGSNSLIGEGSYGRVY", "down_seq": "GVLNNDLPSAIKKLDSNKQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O80719", "url": "https://www.uniprot.org/uniprotkb/O80719" } ], "site_lbl": "Tyr89" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O80719-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O80719-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80719-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O80719-1.101.101", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2V419-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q2V419-1", "length": 311, "uniprot_id": "CKB12_ARATH", "protein_name": "Cyclin-dependent kinase B1-2", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKB1-2; CDKB1", "gene_names_uniprotkb": "CDKB1-2; CDKB1; CDKB1:2; CYCLIN-DEPENDENT KINASE B1:2; T6A23.18; T6A23_18; cyclin-dependent kinase B1:2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MEKYEKLEKVGEGT", "down_seq": "GKVYKAMEKTTGKLVALKKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ], "site_lbl": "Tyr15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2V419-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "Q2V419-1", "length": 311, "uniprot_id": "CKB12_ARATH", "protein_name": "Cyclin-dependent kinase B1-2", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKB1-2; CDKB1", "gene_names_uniprotkb": "CDKB1-2; CDKB1; CDKB1:2; CYCLIN-DEPENDENT KINASE B1:2; T6A23.18; T6A23_18; cyclin-dependent kinase B1:2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GILKIADLGLSRAFTVPLKA", "down_seq": "THEIVTLWYRAPEVLLGSTH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Tyr177" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q2V419-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2V419-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "Q2V419-1", "length": 311, "uniprot_id": "CKB12_ARATH", "protein_name": "Cyclin-dependent kinase B1-2", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKB1-2; CDKB1", "gene_names_uniprotkb": "CDKB1-2; CDKB1; CDKB1:2; CYCLIN-DEPENDENT KINASE B1:2; T6A23.18; T6A23_18; cyclin-dependent kinase B1:2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ILKIADLGLSRAFTVPLKAY", "down_seq": "HEIVTLWYRAPEVLLGSTHY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419" }, { "database": "iPTMnet", "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr178" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q2V419-1.177.177", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2V419-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "Q2V419-1", "length": 311, "uniprot_id": "CKB12_ARATH", "protein_name": "Cyclin-dependent kinase B1-2", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKB1-2; CDKB1", "gene_names_uniprotkb": "CDKB1-2; CDKB1; CDKB1:2; CYCLIN-DEPENDENT KINASE B1:2; T6A23.18; T6A23_18; cyclin-dependent kinase B1:2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKTRLEMDEEGIPPTALREI", "down_seq": "LLQMLSQSIYIVRLLCVEHV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419" } ], "site_lbl": "Ser53" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q2V419-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2V419-1.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "Q2V419-1", "length": 311, "uniprot_id": "CKB12_ARATH", "protein_name": "Cyclin-dependent kinase B1-2", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKB1-2; CDKB1", "gene_names_uniprotkb": "CDKB1-2; CDKB1; CDKB1:2; CYCLIN-DEPENDENT KINASE B1:2; T6A23.18; T6A23_18; cyclin-dependent kinase B1:2", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2V419", "url": "https://www.uniprot.org/uniprotkb/Q2V419" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GIPPTALREISLLQMLSQSI", "down_seq": "IVRLLCVEHVIQSKDSTVSH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2V419", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2V419" } ], "site_lbl": "Tyr63" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q2V419-1.53.53", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82256-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "O82256-1", "length": 332, "uniprot_id": "COL13_ARATH", "protein_name": "Zinc finger protein CONSTANS-LIKE 13", "refseq_ac": "NP_182310", "refseq_name": "B-box type zinc finger protein with CCT domain-containing protein", "gene_name": "COL13", "gene_names_uniprotkb": "COL13; F17A22.28; T9J23", "gene_names_refseq": "F17A22.28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82256", "url": "https://www.uniprot.org/uniprotkb/O82256" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O82256", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82256" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O82256", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82256", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KWFDQQDHEDFPYCSLLKNL", "down_seq": "ESDEKPENVDRESSVMVPVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82256", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82256" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser236" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "236", "end_pos": "236" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38998-1.744.744", "start_pos": 744, "end_pos": 744, "uniprot_canonical_ac": "Q38998-1", "length": 857, "uniprot_id": "AKT1_ARATH", "protein_name": "Potassium channel AKT1", "refseq_ac": "NP_001324538", "refseq_name": "K+ transporter 1", "gene_name": "AKT1; KT1", "gene_names_uniprotkb": "AKT1; KT1; AKT1; ATAKT1; F18A8.2; F18A8_2; K+ transporter 1; POTASSIUM TRANSPORTER", "gene_names_refseq": "AKT1; ATAKT1; F18A8.2; F18A8_2; K+ transporter 1; KT1; POTASSIUM TRANSPORTER", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38998", "url": "https://www.uniprot.org/uniprotkb/Q38998" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q38998", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38998" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q38998", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38998", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRFLGRFTSEPNIRPASREV", "down_seq": "FRIRETRARRKTNNFDNSLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38998", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38998" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser744" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "744", "end_pos": "744" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05762-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "Q05762-1", "length": 519, "uniprot_id": "DRTS1_ARATH", "protein_name": "Bifunctional dihydrofolate reductase-thymidylate synthase 1", "refseq_ac": "NP_001324593", "refseq_name": "thymidylate synthase 1", "gene_name": "DHFR-TS-1; THY-1", "gene_names_uniprotkb": "DHFR-TS-1; THY-1; F16F14.13; F16F14_13; THY-1; thymidylate synthase 1", "gene_names_refseq": "DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE; F16F14.13; F16F14_13; THY-1; thymidylate synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05762", "url": "https://www.uniprot.org/uniprotkb/Q05762" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENGLRFCFTTFVRVKSSADE", "down_seq": "SDESNGSQSLQFDGKKFLFL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser206" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q05762-1.207.207", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q05762-1.215.215", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05762-1.207.207", "start_pos": 207, "end_pos": 207, "uniprot_canonical_ac": "Q05762-1", "length": 519, "uniprot_id": "DRTS1_ARATH", "protein_name": "Bifunctional dihydrofolate reductase-thymidylate synthase 1", "refseq_ac": "NP_001324593", "refseq_name": "thymidylate synthase 1", "gene_name": "DHFR-TS-1; THY-1", "gene_names_uniprotkb": "DHFR-TS-1; THY-1; F16F14.13; F16F14_13; THY-1; thymidylate synthase 1", "gene_names_refseq": "DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE; F16F14.13; F16F14_13; THY-1; thymidylate synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05762", "url": "https://www.uniprot.org/uniprotkb/Q05762" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGLRFCFTTFVRVKSSADES", "down_seq": "DESNGSQSLQFDGKKFLFLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser207" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q05762-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q05762-1.215.215", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05762-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "Q05762-1", "length": 519, "uniprot_id": "DRTS1_ARATH", "protein_name": "Bifunctional dihydrofolate reductase-thymidylate synthase 1", "refseq_ac": "NP_001324593", "refseq_name": "thymidylate synthase 1", "gene_name": "DHFR-TS-1; THY-1", "gene_names_uniprotkb": "DHFR-TS-1; THY-1; F16F14.13; F16F14_13; THY-1; thymidylate synthase 1", "gene_names_refseq": "DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE; F16F14.13; F16F14_13; THY-1; thymidylate synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05762", "url": "https://www.uniprot.org/uniprotkb/Q05762" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TFVRVKSSADESSDESNGSQ", "down_seq": "LQFDGKKFLFLPKMVFDQHE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser215" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q05762-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q05762-1.207.207", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05762-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "Q05762-1", "length": 519, "uniprot_id": "DRTS1_ARATH", "protein_name": "Bifunctional dihydrofolate reductase-thymidylate synthase 1", "refseq_ac": "NP_001324593", "refseq_name": "thymidylate synthase 1", "gene_name": "DHFR-TS-1; THY-1", "gene_names_uniprotkb": "DHFR-TS-1; THY-1; F16F14.13; F16F14_13; THY-1; thymidylate synthase 1", "gene_names_refseq": "DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE; F16F14.13; F16F14_13; THY-1; thymidylate synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05762", "url": "https://www.uniprot.org/uniprotkb/Q05762" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MATT", "down_seq": "LNDSVTTTLASEPQRTYQVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05762" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr5" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "206", "end_pos": "206" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93733-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "P93733-1", "length": 1083, "uniprot_id": "PLDB1_ARATH", "protein_name": "Phospholipase D beta 1", "refseq_ac": "NP_565963", "refseq_name": "phospholipase D beta 1", "gene_name": "PLDBETA1", "gene_names_uniprotkb": "PLDBETA1; PHOSPHOLIPASE D; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDBETA1; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93733", "url": "https://www.uniprot.org/uniprotkb/P93733" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PPPTNQYSAPYYPYPPPPYA", "down_seq": "PPPYASPPPPHQHTSGSHSG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr55", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "672", "end_pos": "672" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "914", "end_pos": "914" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93733-1.672.672", "start_pos": 672, "end_pos": 672, "uniprot_canonical_ac": "P93733-1", "length": 1083, "uniprot_id": "PLDB1_ARATH", "protein_name": "Phospholipase D beta 1", "refseq_ac": "NP_565963", "refseq_name": "phospholipase D beta 1", "gene_name": "PLDBETA1", "gene_names_uniprotkb": "PLDBETA1; PHOSPHOLIPASE D; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDBETA1; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93733", "url": "https://www.uniprot.org/uniprotkb/P93733" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] } ], "crossref": [ { "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NPTFTGNLSGCPREPWHDLH", "down_seq": "KIDGPAAYDVLTNFEERWLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Ser672" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "672", "end_pos": "672" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "914", "end_pos": "914" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P93733-1.680.680", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P93733-1.684.684", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93733-1.680.680", "start_pos": 680, "end_pos": 680, "uniprot_canonical_ac": "P93733-1", "length": 1083, "uniprot_id": "PLDB1_ARATH", "protein_name": "Phospholipase D beta 1", "refseq_ac": "NP_565963", "refseq_name": "phospholipase D beta 1", "gene_name": "PLDBETA1", "gene_names_uniprotkb": "PLDBETA1; PHOSPHOLIPASE D; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDBETA1; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93733", "url": "https://www.uniprot.org/uniprotkb/P93733" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] } ], "crossref": [ { "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SGCPREPWHDLHSKIDGPAA", "down_seq": "DVLTNFEERWLKAAKPSGIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Tyr680" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "672", "end_pos": "672" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "914", "end_pos": "914" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P93733-1.672.672", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93733-1.684.684", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93733-1.684.684", "start_pos": 684, "end_pos": 684, "uniprot_canonical_ac": "P93733-1", "length": 1083, "uniprot_id": "PLDB1_ARATH", "protein_name": "Phospholipase D beta 1", "refseq_ac": "NP_565963", "refseq_name": "phospholipase D beta 1", "gene_name": "PLDBETA1", "gene_names_uniprotkb": "PLDBETA1; PHOSPHOLIPASE D; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDBETA1; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93733", "url": "https://www.uniprot.org/uniprotkb/P93733" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] } ], "crossref": [ { "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "REPWHDLHSKIDGPAAYDVL", "down_seq": "NFEERWLKAAKPSGIKKFKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Thr684" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "672", "end_pos": "672" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "914", "end_pos": "914" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P93733-1.672.672", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93733-1.680.680", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93733-1.908.908", "start_pos": 908, "end_pos": 908, "uniprot_canonical_ac": "P93733-1", "length": 1083, "uniprot_id": "PLDB1_ARATH", "protein_name": "Phospholipase D beta 1", "refseq_ac": "NP_565963", "refseq_name": "phospholipase D beta 1", "gene_name": "PLDBETA1", "gene_names_uniprotkb": "PLDBETA1; PHOSPHOLIPASE D; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDBETA1; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93733", "url": "https://www.uniprot.org/uniprotkb/P93733" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDYLNFFCLGNREMVDGIDN", "down_seq": "GTGSPSNANTPQALSRKSRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser908" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "672", "end_pos": "672" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "914", "end_pos": "914" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P93733-1.910.910", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93733-1.912.912", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P93733-1.914.914", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93733-1.910.910", "start_pos": 910, "end_pos": 910, "uniprot_canonical_ac": "P93733-1", "length": 1083, "uniprot_id": "PLDB1_ARATH", "protein_name": "Phospholipase D beta 1", "refseq_ac": "NP_565963", "refseq_name": "phospholipase D beta 1", "gene_name": "PLDBETA1", "gene_names_uniprotkb": "PLDBETA1; PHOSPHOLIPASE D; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDBETA1; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93733", "url": "https://www.uniprot.org/uniprotkb/P93733" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YLNFFCLGNREMVDGIDNSG", "down_seq": "GSPSNANTPQALSRKSRRFM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr910" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "672", "end_pos": "672" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "914", "end_pos": "914" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P93733-1.908.908", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P93733-1.912.912", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93733-1.914.914", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93733-1.912.912", "start_pos": 912, "end_pos": 912, "uniprot_canonical_ac": "P93733-1", "length": 1083, "uniprot_id": "PLDB1_ARATH", "protein_name": "Phospholipase D beta 1", "refseq_ac": "NP_565963", "refseq_name": "phospholipase D beta 1", "gene_name": "PLDBETA1", "gene_names_uniprotkb": "PLDBETA1; PHOSPHOLIPASE D; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDBETA1; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93733", "url": "https://www.uniprot.org/uniprotkb/P93733" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NFFCLGNREMVDGIDNSGTG", "down_seq": "PSNANTPQALSRKSRRFMVY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser912" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "672", "end_pos": "672" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "914", "end_pos": "914" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P93733-1.908.908", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93733-1.910.910", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P93733-1.914.914", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93733-1.914.914", "start_pos": 914, "end_pos": 914, "uniprot_canonical_ac": "P93733-1", "length": 1083, "uniprot_id": "PLDB1_ARATH", "protein_name": "Phospholipase D beta 1", "refseq_ac": "NP_565963", "refseq_name": "phospholipase D beta 1", "gene_name": "PLDBETA1", "gene_names_uniprotkb": "PLDBETA1; PHOSPHOLIPASE D; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDBETA1; PLDBETA; T6D20.10; T6D20_10; phospholipase D beta 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93733", "url": "https://www.uniprot.org/uniprotkb/P93733" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FCLGNREMVDGIDNSGTGSP", "down_seq": "NANTPQALSRKSRRFMVYVH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93733", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93733" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser914" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "672", "end_pos": "672" }, { "start_pos": "680", "end_pos": "680" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "910", "end_pos": "910" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "914", "end_pos": "914" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P93733-1.908.908", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93733-1.910.910", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93733-1.912.912", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39211-1.216.216", "start_pos": 216, "end_pos": 216, "uniprot_canonical_ac": "Q39211-1", "length": 319, "uniprot_id": "NRPB3_ARATH", "protein_name": "DNA-directed RNA polymerases II, IV and V subunit 3", "refseq_ac": "NP_179145", "refseq_name": "DNA-directed RNA polymerase family protein", "gene_name": "NRPB3", "gene_names_uniprotkb": "NRPB3; F26H6.5; F26H6_5; NRPD3; NRPE3A; RBP36A; RPB35.5A; RPB36A", "gene_names_refseq": "F26H6.5; F26H6_5; NRPB3; NRPD3; NRPE3A; RBP36A; RPB35.5A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39211", "url": "https://www.uniprot.org/uniprotkb/Q39211" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39211", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39211" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q39211", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39211", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "INEDMMDTLSDEEKIDLIES", "down_seq": "PTKVFGMDPVTRQVVVVDPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39211", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39211" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser216" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WSN2-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "Q0WSN2-1", "length": 528, "uniprot_id": "DAR2_ARATH", "protein_name": "Protein DA1-related 2", "refseq_ac": "NP_181513", "refseq_name": "DA1-related protein 2", "gene_name": "DAR2", "gene_names_uniprotkb": "DAR2; DA1-related protein 2; LATERAL ROOT DEVELOPMENT 3; LRD3; T5I7.13; T5I7_13", "gene_names_refseq": "DA1-related protein 2; DAR2; LATERAL ROOT DEVELOPMENT 3; LRD3; T5I7.13; T5I7_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WSN2", "url": "https://www.uniprot.org/uniprotkb/Q0WSN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WSN2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WSN2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WSN2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WSN2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSLDDRSRGARDKEELDRSI", "down_seq": "LSLADNTKRPHGYGWSMDNN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WSN2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WSN2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser109" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39099-1.117.117", "start_pos": 117, "end_pos": 117, "uniprot_canonical_ac": "Q39099-1", "length": 296, "uniprot_id": "XTH4_ARATH", "protein_name": "Xyloglucan endotransglucosylase/hydrolase protein 4", "refseq_ac": "NP_178708", "refseq_name": "xyloglucan endotransglucosylase/hydrolase 4", "gene_name": "XTH4", "gene_names_uniprotkb": "XTH4; ENDOXYLOGLUCAN TRANSFERASE; EXGT-A1; EXT; T9F8.4; T9F8_4; endoxyloglucan transferase A1", "gene_names_refseq": "ENDOXYLOGLUCAN TRANSFERASE; EXGT-A1; EXT; T9F8.4; T9F8_4; XTH4; endoxyloglucan transferase A1; xyloglucan endotransglucosylase/hydrolase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39099", "url": "https://www.uniprot.org/uniprotkb/Q39099" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "In vitro activities of four xyloglucan endotransglycosylases from Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "1999-05", "authors": "Campbell P, Braam J", "evidence": [ { "database": "UniProtKB", "id": "Q39099", "url": "https://www.uniprot.org/uniprotkb/Q39099#ptm_processing" }, { "database": "UniProtKB", "id": "Q39099", "url": "https://www.uniprot.org/uniprotkb/Q39099" } ], "reference": [ { "type": "PubMed", "id": "10406121", "url": "https://glygen.org/publication/PubMed/10406121" } ] } ], "crossref": [ { "id": "Q39099", "url": "https://www.uniprot.org/uniprotkb/Q39099", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10406121", "url": "https://glygen.org/publication/PubMed/10406121", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AFYLSSTNNEHDEIDFEFLG", "down_seq": "RTGQPAILQTNVFTGGKGNR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn117", "evidence": [ { "id": "Q39099", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39099#ptm_processing" }, { "id": "10406121", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10406121" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "117", "end_pos": "117" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49404-1.153.153", "start_pos": 153, "end_pos": 153, "uniprot_canonical_ac": "O49404-1", "length": 284, "uniprot_id": "BEH3_ARATH", "protein_name": "BES1/BZR1 homolog protein 3", "refseq_ac": "NP_193624", "refseq_name": "BES1/BZR1 homolog 3", "gene_name": "BEH3", "gene_names_uniprotkb": "BEH3; BZR1 homolog 3; F13C5.60; F13C5_60", "gene_names_refseq": "BEH3; BES1/BZR1 homolog 3; F13C5.60; F13C5_60", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49404", "url": "https://www.uniprot.org/uniprotkb/O49404" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "O49404", "url": "https://www.uniprot.org/uniprotkb/O49404", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSNSPSKLPFFHGNSISAPV", "down_seq": "PPLARSPTRDQVTIPDSGWL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr153", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O49404", "url": "https://www.uniprot.org/uniprotkb/O49404" } ], "site_lbl": "Thr153" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "153", "end_pos": "153" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "153", "end_pos": "153" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O49404-1.147.147", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49404-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "O49404-1", "length": 284, "uniprot_id": "BEH3_ARATH", "protein_name": "BES1/BZR1 homolog protein 3", "refseq_ac": "NP_193624", "refseq_name": "BES1/BZR1 homolog 3", "gene_name": "BEH3", "gene_names_uniprotkb": "BEH3; BZR1 homolog 3; F13C5.60; F13C5_60", "gene_names_refseq": "BEH3; BES1/BZR1 homolog 3; F13C5.60; F13C5_60", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49404", "url": "https://www.uniprot.org/uniprotkb/O49404" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O49404", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49404" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O49404", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49404", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PWLKNLSSNSPSKLPFFHGN", "down_seq": "ISAPVTPPLARSPTRDQVTI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O49404", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49404" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser147" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "153", "end_pos": "153" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "153", "end_pos": "153" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O49404-1.153.153", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPU1-1.1092.1092", "start_pos": 1092, "end_pos": 1092, "uniprot_canonical_ac": "Q0WPU1-1", "length": 1522, "uniprot_id": "MYO15_ARATH", "protein_name": "Myosin-15", "refseq_ac": "NP_195046", "refseq_name": "myosin", "gene_name": "XI-I", "gene_names_uniprotkb": "XI-I; ATXI-I; F4I10.130; F4I10_130; KAKU1; MYOSIN XI I; MYOSIN XI-15; XI-15", "gene_names_refseq": "ATXI-I; F4I10.130; F4I10_130; MYOSIN XI I; MYOSIN XI-15; XI-15; XI-I", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPU1", "url": "https://www.uniprot.org/uniprotkb/Q0WPU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KHSSAVVPAQNDRRSVFETP", "down_seq": "PSKHIMPFSHSLSESRRSKL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1092", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1223", "end_pos": "1223" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "743", "end_pos": "743" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WPU1-1.1223.1223", "start_pos": 1223, "end_pos": 1223, "uniprot_canonical_ac": "Q0WPU1-1", "length": 1522, "uniprot_id": "MYO15_ARATH", "protein_name": "Myosin-15", "refseq_ac": "NP_195046", "refseq_name": "myosin", "gene_name": "XI-I", "gene_names_uniprotkb": "XI-I; ATXI-I; F4I10.130; F4I10_130; KAKU1; MYOSIN XI I; MYOSIN XI-15; XI-15", "gene_names_refseq": "ATXI-I; F4I10.130; F4I10_130; MYOSIN XI I; MYOSIN XI-15; XI-15; XI-I", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPU1", "url": "https://www.uniprot.org/uniprotkb/Q0WPU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNSFLNASAQRSGRAAYGVK", "down_seq": "PFKLHGPDDGASHIEARYPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1223" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1223", "end_pos": "1223" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "743", "end_pos": "743" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPU1-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "Q0WPU1-1", "length": 1522, "uniprot_id": "MYO15_ARATH", "protein_name": "Myosin-15", "refseq_ac": "NP_195046", "refseq_name": "myosin", "gene_name": "XI-I", "gene_names_uniprotkb": "XI-I; ATXI-I; F4I10.130; F4I10_130; KAKU1; MYOSIN XI I; MYOSIN XI-15; XI-15", "gene_names_refseq": "ATXI-I; F4I10.130; F4I10_130; MYOSIN XI I; MYOSIN XI-15; XI-15; XI-I", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPU1", "url": "https://www.uniprot.org/uniprotkb/Q0WPU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKFVEIQFDTNGRISGAAIR", "down_seq": "YLLERSRVVRITDPERNYHC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr241" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1223", "end_pos": "1223" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "743", "end_pos": "743" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPU1-1.743.743", "start_pos": 743, "end_pos": 743, "uniprot_canonical_ac": "Q0WPU1-1", "length": 1522, "uniprot_id": "MYO15_ARATH", "protein_name": "Myosin-15", "refseq_ac": "NP_195046", "refseq_name": "myosin", "gene_name": "XI-I", "gene_names_uniprotkb": "XI-I; ATXI-I; F4I10.130; F4I10_130; KAKU1; MYOSIN XI I; MYOSIN XI-15; XI-15", "gene_names_refseq": "ATXI-I; F4I10.130; F4I10_130; MYOSIN XI I; MYOSIN XI-15; XI-15; XI-I", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPU1", "url": "https://www.uniprot.org/uniprotkb/Q0WPU1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FLRAGQIGILDSRRAEVLDA", "down_seq": "ARLIQRRLRTFVTHQNFISA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPU1" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser743" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1223", "end_pos": "1223" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "743", "end_pos": "743" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNFAFIQYEAQEDATRALDA", "down_seq": "NNSKLMDKVISVEYAVKDDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P92965-1.154.154", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AFIQYEAQEDATRALDASNN", "down_seq": "KLMDKVISVEYAVKDDDARG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser154" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P92965-1.151.151", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKVISVEYAVKDDDARGNGH", "down_seq": "PERRRDRSPERRRRSPSPYK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser178" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "P92965-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P92965-1.195.195", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGNGHSPERRRDRSPERRRR", "down_seq": "PSPYKRERGSPDYGRGASPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P92965-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92965-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92965-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92965-1.211.211", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGHSPERRRDRSPERRRRSP", "down_seq": "PYKRERGSPDYGRGASPVAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser195" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P92965-1.178.178", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92965-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92965-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92965-1.211.211", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RDRSPERRRRSPSPYKRERG", "down_seq": "PDYGRGASPVAAYRKERTSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser203" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P92965-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P92965-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92965-1.211.211", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P92965-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92965-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P92965-1.222.222", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.", "journal": "Journal of proteomics", "date": "2009-07-21", "authors": "Wang Zenglan, Dong Gaofeng, Singh Sasha, Steen Hanno, Li Jiaxu", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRSPSPYKRERGSPDYGRGA", "down_seq": "PVAAYRKERTSPDYGRRRSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser211" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92965-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P92965-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P92965-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92965-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92965-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P92965-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P92965-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.216.216", "start_pos": 216, "end_pos": 216, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PYKRERGSPDYGRGASPVAA", "down_seq": "RKERTSPDYGRRRSPSPYKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr216" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P92965-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92965-1.211.211", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92965-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P92965-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P92965-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.221.221", "start_pos": 221, "end_pos": 221, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RGSPDYGRGASPVAAYRKER", "down_seq": "SPDYGRRRSPSPYKKSRRGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr221" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92965-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P92965-1.211.211", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92965-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P92965-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92965-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92965-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P92965-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSPDYGRGASPVAAYRKERT", "down_seq": "PDYGRRRSPSPYKKSRRGSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser222" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P92965-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P92965-1.211.211", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P92965-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P92965-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P92965-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P92965-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P92965-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DYGRGASPVAAYRKERTSPD", "down_seq": "GRRRSPSPYKKSRRGSPEYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Tyr225" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P92965-1.211.211", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P92965-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P92965-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P92965-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P92965-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92965-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKERTSPDYGRRRSPSPYKK", "down_seq": "RRGSPEYGRDRRGNDSPRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P92965-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P92965-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P92965-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92965-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSPDYGRRRSPSPYKKSRRG", "down_seq": "PEYGRDRRGNDSPRRRERVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser241" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P92965-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "P92965-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P92965-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P92965-1.237.237", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.262.262", "start_pos": 262, "end_pos": 262, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEYGRDRRGNDSPRRRERVA", "down_seq": "PTKYSRSPNNKRERMSPNHS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser262" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P92965-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92965-1.278.278", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P92965-1.282.282", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DRRGNDSPRRRERVASPTKY", "down_seq": "RSPNNKRERMSPNHSPFKKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser267" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P92965-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P92965-1.278.278", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P92965-1.282.282", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERVASPTKYSRSPNNKRERM", "down_seq": "PNHSPFKKESPRNGVGEVES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser278" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P92965-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P92965-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92965-1.282.282", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92965-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P92965-1.298.298", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPTKYSRSPNNKRERMSPNH", "down_seq": "PFKKESPRNGVGEVESPIER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser282" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P92965-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P92965-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P92965-1.278.278", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P92965-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92965-1.298.298", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSPNNKRERMSPNHSPFKKE", "down_seq": "PRNGVGEVESPIERRERSRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser288" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P92965-1.278.278", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P92965-1.282.282", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92965-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92965-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P92965-1.308.308", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.298.298", "start_pos": 298, "end_pos": 298, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.", "journal": "Journal of proteomics", "date": "2009-07-21", "authors": "Wang Zenglan, Dong Gaofeng, Singh Sasha, Steen Hanno, Li Jiaxu", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPNHSPFKKESPRNGVGEVE", "down_seq": "PIERRERSRSSPENGQVESP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser298" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P92965-1.278.278", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P92965-1.282.282", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P92965-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92965-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92965-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P92965-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P92965-1.317.317", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KESPRNGVGEVESPIERRER", "down_seq": "RSSPENGQVESPGSIGRRDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser306" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92965-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P92965-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92965-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P92965-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P92965-1.317.317", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P92965-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.308.308", "start_pos": 308, "end_pos": 308, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPRNGVGEVESPIERRERSR", "down_seq": "SPENGQVESPGSIGRRDSDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser308" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P92965-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P92965-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92965-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P92965-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P92965-1.317.317", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P92965-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRNGVGEVESPIERRERSRS", "down_seq": "PENGQVESPGSIGRRDSDGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser309" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P92965-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P92965-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P92965-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92965-1.317.317", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P92965-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.317.317", "start_pos": 317, "end_pos": 317, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESPIERRERSRSSPENGQVE", "down_seq": "PGSIGRRDSDGGYDGAESPM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser317" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P92965-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P92965-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P92965-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P92965-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P92965-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92965-1.335.335", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IERRERSRSSPENGQVESPG", "down_seq": "IGRRDSDGGYDGAESPMQKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser320" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P92965-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P92965-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P92965-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P92965-1.317.317", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P92965-1.335.335", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P92965-1.340.340", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRSSPENGQVESPGSIGRRD", "down_seq": "DGGYDGAESPMQKSRSPRSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser326" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P92965-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P92965-1.308.308", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P92965-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P92965-1.317.317", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P92965-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P92965-1.335.335", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P92965-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92965-1.342.342", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P92965-1.345.345", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.335.335", "start_pos": 335, "end_pos": 335, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VESPGSIGRRDSDGGYDGAE", "down_seq": "PMQKSRSPRSPPADE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser335" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92965-1.317.317", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P92965-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92965-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P92965-1.342.342", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92965-1.345.345", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SIGRRDSDGGYDGAESPMQK", "down_seq": "RSPRSPPADE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" }, { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser340" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P92965-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92965-1.335.335", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92965-1.342.342", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92965-1.345.345", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRRDSDGGYDGAESPMQKSR", "down_seq": "PRSPPADE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser342" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P92965-1.335.335", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92965-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P92965-1.345.345", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.345.345", "start_pos": 345, "end_pos": 345, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "iPTMnet", "id": "P92965-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965-1" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSDGGYDGAESPMQKSRSPR", "down_seq": "PPADE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser345" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P92965-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P92965-1.335.335", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92965-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P92965-1.342.342", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92965-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "P92965-1", "length": 350, "uniprot_id": "RS40_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS40", "refseq_ac": "NP_001078447", "refseq_name": "arginine/serine-rich splicing factor 35", "gene_name": "RS40", "gene_names_uniprotkb": "RS40; AT-SRP40; ATRSP35; ATRSP40; At-RS40; M7J2.130; RSP35; RSP40; SPLICING FACTOR AT-SRP40; T30C3.9", "gene_names_refseq": "ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35; ARGININE/SERINE-RICH SPLICING FACTOR; AT-SRP40; ATRSP35; ATRSP40; At-RS40; RS40; RSP35; SPLICING FACTOR AT-SRP40; T30C3.9; arginine/serine-rich splicing factor 35; arginine/serine-rich splicing factor 40", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92965", "url": "https://www.uniprot.org/uniprotkb/P92965" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEWTKSERGGDKRSGGGSRR", "down_seq": "SSSMRPSKTLFVINFDADNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92965", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92965" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser89" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39050-1.367.367", "start_pos": 367, "end_pos": 367, "uniprot_canonical_ac": "Q39050-1", "length": 457, "uniprot_id": "CKL11_ARATH", "protein_name": "Casein kinase 1-like protein 11", "refseq_ac": "NP_193170", "refseq_name": "casein kinase I", "gene_name": "CKI1; CKL11", "gene_names_uniprotkb": "CKI1; CKL11; CASEIN KINASE I-LIKE 11; CKI1; CKL11; DL3210C; FCAALL.68; casein kinase I; dl3210c", "gene_names_refseq": "CASEIN KINASE I-LIKE 11; CKI1; CKL11; DL3210C; FCAALL.68; casein kinase I", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39050", "url": "https://www.uniprot.org/uniprotkb/Q39050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39050" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AFTRRNVSSQGALGDRSRHR", "down_seq": "SDDIPSSAKEVHESRNGSTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39050" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser367" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "367", "end_pos": "367" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39050-1.452.452", "start_pos": 452, "end_pos": 452, "uniprot_canonical_ac": "Q39050-1", "length": 457, "uniprot_id": "CKL11_ARATH", "protein_name": "Casein kinase 1-like protein 11", "refseq_ac": "NP_193170", "refseq_name": "casein kinase I", "gene_name": "CKI1; CKL11", "gene_names_uniprotkb": "CKI1; CKL11; CASEIN KINASE I-LIKE 11; CKI1; CKL11; DL3210C; FCAALL.68; casein kinase I; dl3210c", "gene_names_refseq": "CASEIN KINASE I-LIKE 11; CKI1; CKL11; DL3210C; FCAALL.68; casein kinase I", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39050", "url": "https://www.uniprot.org/uniprotkb/Q39050" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39050" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAARPGHEDAIRNFELLTIG", "down_seq": "GKKRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39050" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser452" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "367", "end_pos": "367" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUR5-1.1143.1143", "start_pos": 1143, "end_pos": 1143, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNNYLEAPKNSAPKVMGRNV", "down_seq": "LEKLSDEKVKSIPTHVAICN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser1143" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUR5-1.1266.1266", "start_pos": 1266, "end_pos": 1266, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WIGEQTTSENGIFRPPSRAA", "down_seq": "TNGTQIPDLRLLGSESELNF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1266" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q0WUR5-1.1282.1282", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUR5-1.1282.1282", "start_pos": 1282, "end_pos": 1282, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRAASTNGTQIPDLRLLGSE", "down_seq": "ELNFKGGPTNDEHTTQVQLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1282" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q0WUR5-1.1266.1266", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUR5-1.1392.1392", "start_pos": 1392, "end_pos": 1392, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSSEYKAQMSGSDKSRDRLD", "down_seq": "GGSFSLFDSVNLLSLNSLSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "site_lbl": "Ser1392" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0WUR5-1.1395.1395", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WUR5-1.1397.1397", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WUR5-1.1401.1401", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WUR5-1.1406.1406", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q0WUR5-1.1409.1409", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q0WUR5-1.1411.1411", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUR5-1.1395.1395", "start_pos": 1395, "end_pos": 1395, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EYKAQMSGSDKSRDRLDSGG", "down_seq": "FSLFDSVNLLSLNSLSDLSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "site_lbl": "Ser1395" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WUR5-1.1392.1392", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WUR5-1.1397.1397", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q0WUR5-1.1401.1401", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q0WUR5-1.1406.1406", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WUR5-1.1409.1409", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q0WUR5-1.1411.1411", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUR5-1.1397.1397", "start_pos": 1397, "end_pos": 1397, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KAQMSGSDKSRDRLDSGGSF", "down_seq": "LFDSVNLLSLNSLSDLSVDM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "site_lbl": "Ser1397" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q0WUR5-1.1392.1392", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WUR5-1.1395.1395", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WUR5-1.1401.1401", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WUR5-1.1406.1406", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q0WUR5-1.1409.1409", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WUR5-1.1411.1411", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUR5-1.1401.1401", "start_pos": 1401, "end_pos": 1401, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGSDKSRDRLDSGGSFSLFD", "down_seq": "VNLLSLNSLSDLSVDMSRSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "site_lbl": "Ser1401" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q0WUR5-1.1392.1392", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q0WUR5-1.1395.1395", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WUR5-1.1397.1397", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WUR5-1.1406.1406", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WUR5-1.1409.1409", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WUR5-1.1411.1411", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUR5-1.1406.1406", "start_pos": 1406, "end_pos": 1406, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRDRLDSGGSFSLFDSVNLL", "down_seq": "LNSLSDLSVDMSRSLSSADE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "site_lbl": "Ser1406" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WUR5-1.1392.1392", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q0WUR5-1.1395.1395", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q0WUR5-1.1397.1397", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WUR5-1.1401.1401", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WUR5-1.1409.1409", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WUR5-1.1411.1411", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUR5-1.1409.1409", "start_pos": 1409, "end_pos": 1409, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLDSGGSFSLFDSVNLLSLN", "down_seq": "LSDLSVDMSRSLSSADEQVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "site_lbl": "Ser1409" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q0WUR5-1.1392.1392", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q0WUR5-1.1395.1395", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q0WUR5-1.1397.1397", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WUR5-1.1401.1401", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WUR5-1.1406.1406", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WUR5-1.1411.1411", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUR5-1.1411.1411", "start_pos": 1411, "end_pos": 1411, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSGGSFSLFDSVNLLSLNSL", "down_seq": "DLSVDMSRSLSSADEQVSQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "site_lbl": "Ser1411" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q0WUR5-1.1392.1392", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q0WUR5-1.1395.1395", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q0WUR5-1.1397.1397", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q0WUR5-1.1401.1401", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WUR5-1.1406.1406", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WUR5-1.1409.1409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUR5-1.1558.1558", "start_pos": 1558, "end_pos": 1558, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SISTKSPTSLAKILGIYQVS", "down_seq": "KHLKGGKEFKMDVLVMENLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser1558" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUR5-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLLWLPPEPENEEDEREAVL", "down_seq": "DDDGDEGDRGDWGYLRPSNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser329" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q0WUR5-1.349.349", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUR5-1.349.349", "start_pos": 349, "end_pos": 349, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDDDGDEGDRGDWGYLRPSN", "down_seq": "FNEKDFHSKDKSSGAMKNVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser349" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q0WUR5-1.329.329", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUR5-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NRRHHCRLCGRVFCAKCAAN", "down_seq": "IPSPSDETKDSHEEPERIRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser73" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUR5-1.762.762", "start_pos": 762, "end_pos": 762, "uniprot_canonical_ac": "Q0WUR5-1", "length": 1757, "uniprot_id": "FAB1A_ARATH", "protein_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "refseq_ac": "NP_001320122", "refseq_name": "1-phosphatidylinositol-3-phosphate 5-kinase FAB1A", "gene_name": "FAB1A", "gene_names_uniprotkb": "FAB1A; F4I10.170; F4I10_170", "gene_names_refseq": "F4I10.170; F4I10_170; FAB1A; FORMS APLOID AND BINUCLEATE CELLS 1A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUR5", "url": "https://www.uniprot.org/uniprotkb/Q0WUR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PETITSKDDGLVPTLESRQL", "down_seq": "FHVEEPSVQKDQWSVLSGAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WUR5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WUR5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser762" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1143", "end_pos": "1143" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1282", "end_pos": "1282" }, { "start_pos": "1392", "end_pos": "1392" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1397", "end_pos": "1397" }, { "start_pos": "1401", "end_pos": "1401" }, { "start_pos": "1406", "end_pos": "1406" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1411", "end_pos": "1411" }, { "start_pos": "1558", "end_pos": "1558" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "762", "end_pos": "762" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38898-1.179.179", "start_pos": 179, "end_pos": 179, "uniprot_canonical_ac": "Q38898-1", "length": 802, "uniprot_id": "AKT2_ARATH", "protein_name": "Potassium channel AKT2/3", "refseq_ac": "NP_567651", "refseq_name": "potassium transport 2/3", "gene_name": "3; AKT2", "gene_names_uniprotkb": "3; AKT2; 3; AKT2; AKT3; T10I14.30; T10I14_30", "gene_names_refseq": "AKT2/3; AKT2; AKT3; KT2/3; T10I14.30; T10I14_30; potassium transport 2/3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VASTIPFDAIGYLITGTSTL", "down_seq": "ITCNLLGLLRFWRLRRVKHL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn179", "evidence": [ { "id": "Q38898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "254", "end_pos": "254" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "243", "end_pos": "243" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38898-1.254.254", "start_pos": 254, "end_pos": 254, "uniprot_canonical_ac": "Q38898-1", "length": 802, "uniprot_id": "AKT2_ARATH", "protein_name": "Potassium channel AKT2/3", "refseq_ac": "NP_567651", "refseq_name": "potassium transport 2/3", "gene_name": "3; AKT2", "gene_names_uniprotkb": "3; AKT2; 3; AKT2; AKT3; T10I14.30; T10I14_30", "gene_names_refseq": "AKT2/3; AKT2; AKT3; KT2/3; T10I14.30; T10I14_30; potassium transport 2/3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YYLIADRYPHQGKTWTDAIP", "down_seq": "FTETSLSIRYIAAIYWSITT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn254", "evidence": [ { "id": "Q38898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "254", "end_pos": "254" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "243", "end_pos": "243" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q38898-1.243.243", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38898-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "Q38898-1", "length": 802, "uniprot_id": "AKT2_ARATH", "protein_name": "Potassium channel AKT2/3", "refseq_ac": "NP_567651", "refseq_name": "potassium transport 2/3", "gene_name": "3; AKT2", "gene_names_uniprotkb": "3; AKT2; 3; AKT2; AKT3; T10I14.30; T10I14_30", "gene_names_refseq": "AKT2/3; AKT2; AKT3; KT2/3; T10I14.30; T10I14_30; potassium transport 2/3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Outer pore residues control the H(+) and K(+) sensitivity of the Arabidopsis potassium channel AKT3.", "journal": "The Plant cell", "date": "2002-08", "authors": "Geiger Dietmar, Becker Dirk, Lacombe Benoit, Hedrich Rainer", "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "reference": [ { "type": "PubMed", "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027" } ] } ], "crossref": [ { "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "TLFLVHCAGCSYYLIADRYP", "down_seq": "QGKTWTDAIPNFTETSLSIR", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "D", "comment": "Abolishes the proton sensitivity; lack of susceptibility to extracellular potassium; when associated with E-286.", "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" }, { "database": "PubMed", "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "254", "end_pos": "254" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "243", "end_pos": "243" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q38898-1.254.254", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38898-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "Q38898-1", "length": 802, "uniprot_id": "AKT2_ARATH", "protein_name": "Potassium channel AKT2/3", "refseq_ac": "NP_567651", "refseq_name": "potassium transport 2/3", "gene_name": "3; AKT2", "gene_names_uniprotkb": "3; AKT2; 3; AKT2; AKT3; T10I14.30; T10I14_30", "gene_names_refseq": "AKT2/3; AKT2; AKT3; KT2/3; T10I14.30; T10I14_30; potassium transport 2/3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Outer pore residues control the H(+) and K(+) sensitivity of the Arabidopsis potassium channel AKT3.", "journal": "The Plant cell", "date": "2002-08", "authors": "Geiger Dietmar, Becker Dirk, Lacombe Benoit, Hedrich Rainer", "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "reference": [ { "type": "PubMed", "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027" } ] } ], "crossref": [ { "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAIYWSITTMTTVGYGDLHA", "down_seq": "NTIEMVFITVYMLFNLGLTA", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "E", "comment": "Abolishes the proton and the potassium sensitivity; lack of susceptibility to extracellular potassium; when associated with D-243.", "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" }, { "database": "PubMed", "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "254", "end_pos": "254" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "243", "end_pos": "243" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q38898-1.289.289", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38898-1.289.289", "start_pos": 289, "end_pos": 289, "uniprot_canonical_ac": "Q38898-1", "length": 802, "uniprot_id": "AKT2_ARATH", "protein_name": "Potassium channel AKT2/3", "refseq_ac": "NP_567651", "refseq_name": "potassium transport 2/3", "gene_name": "3; AKT2", "gene_names_uniprotkb": "3; AKT2; 3; AKT2; AKT3; T10I14.30; T10I14_30", "gene_names_refseq": "AKT2/3; AKT2; AKT3; KT2/3; T10I14.30; T10I14_30; potassium transport 2/3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Outer pore residues control the H(+) and K(+) sensitivity of the Arabidopsis potassium channel AKT3.", "journal": "The Plant cell", "date": "2002-08", "authors": "Geiger Dietmar, Becker Dirk, Lacombe Benoit, Hedrich Rainer", "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "reference": [ { "type": "PubMed", "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027" } ] } ], "crossref": [ { "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "YWSITTMTTVGYGDLHASNT", "down_seq": "EMVFITVYMLFNLGLTAYLI", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "R", "comment": "No change in proton sensitivity.", "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" }, { "database": "PubMed", "id": "12172027", "url": "https://glygen.org/publication/PubMed/12172027" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "254", "end_pos": "254" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "243", "end_pos": "243" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q38898-1.286.286", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38898-1.210.210", "start_pos": 210, "end_pos": 210, "uniprot_canonical_ac": "Q38898-1", "length": 802, "uniprot_id": "AKT2_ARATH", "protein_name": "Potassium channel AKT2/3", "refseq_ac": "NP_567651", "refseq_name": "potassium transport 2/3", "gene_name": "3; AKT2", "gene_names_uniprotkb": "3; AKT2; 3; AKT2; AKT3; T10I14.30; T10I14_30", "gene_names_refseq": "AKT2/3; AKT2; AKT3; KT2/3; T10I14.30; T10I14_30; potassium transport 2/3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The K (+) battery-regulating Arabidopsis K (+) channel AKT2 is under the control of multiple post-translational steps.", "journal": "Plant signaling & behavior", "date": "2011-04", "authors": "Sandmann Michael, Sk\u0142odowski Kamil, Gajdanowicz Pawel, Michard Erwan, Rocha Marcio, Gomez-Porras Judith L, Gonz\u00e1lez Wendy, Corr\u00eaa Luiz Gustavo Guedes, Ram\u00edrez-Aguilar Santiago J, Cuin Tracey Ann, van Dongen Joost T, Thibaud Jean-Baptiste, Dreyer Ingo", "evidence": [ { "database": "iPTMnet", "id": "Q38898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38898" } ], "reference": [ { "type": "PubMed", "id": "21445013", "url": "https://glygen.org/publication/PubMed/21445013" } ] } ], "crossref": [ { "id": "Q38898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38898", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21445013", "url": "https://glygen.org/publication/PubMed/21445013", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FWRLRRVKHLFTRLEKDIRY", "down_seq": "YFWIRCFRLLSVTLFLVHCA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38898" }, { "database": "PubMed", "id": "21445013", "url": "https://glygen.org/publication/PubMed/21445013" } ], "site_lbl": "Ser210" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "254", "end_pos": "254" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "243", "end_pos": "243" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38898-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "Q38898-1", "length": 802, "uniprot_id": "AKT2_ARATH", "protein_name": "Potassium channel AKT2/3", "refseq_ac": "NP_567651", "refseq_name": "potassium transport 2/3", "gene_name": "3; AKT2", "gene_names_uniprotkb": "3; AKT2; 3; AKT2; AKT3; T10I14.30; T10I14_30", "gene_names_refseq": "AKT2/3; AKT2; AKT3; KT2/3; T10I14.30; T10I14_30; potassium transport 2/3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38898", "url": "https://www.uniprot.org/uniprotkb/Q38898" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The K (+) battery-regulating Arabidopsis K (+) channel AKT2 is under the control of multiple post-translational steps.", "journal": "Plant signaling & behavior", "date": "2011-04", "authors": "Sandmann Michael, Sk\u0142odowski Kamil, Gajdanowicz Pawel, Michard Erwan, Rocha Marcio, Gomez-Porras Judith L, Gonz\u00e1lez Wendy, Corr\u00eaa Luiz Gustavo Guedes, Ram\u00edrez-Aguilar Santiago J, Cuin Tracey Ann, van Dongen Joost T, Thibaud Jean-Baptiste, Dreyer Ingo", "evidence": [ { "database": "iPTMnet", "id": "Q38898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38898" } ], "reference": [ { "type": "PubMed", "id": "21445013", "url": "https://glygen.org/publication/PubMed/21445013" } ] } ], "crossref": [ { "id": "Q38898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38898", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21445013", "url": "https://glygen.org/publication/PubMed/21445013", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGNMTNLVVEGTRRTMEFRN", "down_seq": "IEAASNFVNRNRLPPRLKDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38898" }, { "database": "PubMed", "id": "21445013", "url": "https://glygen.org/publication/PubMed/21445013" } ], "site_lbl": "Ser329" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "254", "end_pos": "254" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "243", "end_pos": "243" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "329", "end_pos": "329" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1JPL4-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q1JPL4-1", "length": 571, "uniprot_id": "NDB1_ARATH", "protein_name": "External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial", "refseq_ac": "NP_567801", "refseq_name": "NAD(P)H dehydrogenase B1", "gene_name": "NDB1", "gene_names_uniprotkb": "NDB1; F26K10.100; F26K10_100; NAD(P)H dehydrogenase B1", "gene_names_refseq": "F26K10.100; F26K10_100; NAD(P)H dehydrogenase B1; NDB1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1JPL4", "url": "https://www.uniprot.org/uniprotkb/Q1JPL4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLTEEQRRRKLHFVIVGGGP", "down_seq": "GVEFAAELHDFIIEDITKIY", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr225", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "387", "end_pos": "387" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1JPL4-1.387.387", "start_pos": 387, "end_pos": 387, "uniprot_canonical_ac": "Q1JPL4-1", "length": 571, "uniprot_id": "NDB1_ARATH", "protein_name": "External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial", "refseq_ac": "NP_567801", "refseq_name": "NAD(P)H dehydrogenase B1", "gene_name": "NDB1", "gene_names_uniprotkb": "NDB1; F26K10.100; F26K10_100; NAD(P)H dehydrogenase B1", "gene_names_refseq": "F26K10.100; F26K10_100; NAD(P)H dehydrogenase B1; NDB1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q1JPL4", "url": "https://www.uniprot.org/uniprotkb/Q1JPL4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ca2+-binding and Ca2+-independent respiratory NADH and NADPH dehydrogenases of Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2007-09-28", "authors": "Geisler Daniela A, Broselid Christian, Hederstedt Lars, Rasmusson Allan G", "evidence": [ { "database": "UniProtKB", "id": "Q1JPL4", "url": "https://www.uniprot.org/uniprotkb/Q1JPL4" } ], "reference": [ { "type": "PubMed", "id": "17673460", "url": "https://glygen.org/publication/PubMed/17673460" } ] } ], "crossref": [ { "id": "Q1JPL4", "url": "https://www.uniprot.org/uniprotkb/Q1JPL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17673460", "url": "https://glygen.org/publication/PubMed/17673460", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "SIAQRKILGDIANIFKAADA", "down_seq": "NSGTLTMEELEGVVDDIIVR", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Impaired calcium binding and loss of NADH oxidase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q1JPL4", "url": "https://www.uniprot.org/uniprotkb/Q1JPL4" }, { "database": "PubMed", "id": "17673460", "url": "https://glygen.org/publication/PubMed/17673460" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "387", "end_pos": "387" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0PW40-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSDCSNCIKGAAGWLIQDCV", "down_seq": "QTDAYYWALDPTLCLVRYSN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q0PW40-1.125.125", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NQTDAYYWALDPTLCLVRYS", "down_seq": "ISFSGSAAFWEIEPQYLVLN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn125", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q0PW40-1.105.105", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AAFWEIEPQYLVLNTATIAS", "down_seq": "LTEFKTIWEDLTSRTITAAS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn152", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ASAARSTPSSSDNHYRVDFA", "down_seq": "LTKFQNIYALMQCTPDISSD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn191", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SDECNNCLQRGVLEYQSCCG", "down_seq": "NTGGYVMRPICFFRWQLFTF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn230", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VMRPICFFRWQLFTFSKAFH", "down_seq": "ITLATTPPLSPPPLQRPVVA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn256", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QRPVVASQPPSADNRDKKRD", "down_seq": "SSGKISMKTILAIVVVGIVI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn291", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGVASVSAQTCIENRKYFTP", "down_seq": "GTYDSNRRLILSSLPNNTAS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn37", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q0PW40-1.53.53", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.523.523", "start_pos": 523, "end_pos": 523, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GTARIFGMDQSVAITANAAG", "down_seq": "PGYMAPEYMELGEFSMKSDV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr523", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "site_lbl": "Thr523" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q0PW40-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YFTPNGTYDSNRRLILSSLP", "down_seq": "NTASRDGFYYGSIGEEQDRV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn53", "evidence": [ { "id": "Q0PW40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0PW40#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q0PW40-1.37.37", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.431.431", "start_pos": 431, "end_pos": 431, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRNLVRLLGFSVKGEEKIIV", "down_seq": "EYLPNRSLDYILFDPTKQGE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "site_lbl": "Tyr431" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0PW40-1.531.531", "start_pos": 531, "end_pos": 531, "uniprot_canonical_ac": "Q0PW40-1", "length": 673, "uniprot_id": "CRK13_ARATH", "protein_name": "Cysteine-rich receptor-like protein kinase 13", "refseq_ac": "NP_001078435", "refseq_name": "cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "gene_name": "CRK13", "gene_names_uniprotkb": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1", "gene_names_refseq": "CRK13; F21P8.100; F21P8_100; HIG1; HIGH INDOLIC GLUCOSINOLATE 1; cysteine-rich RLK (RECEPTOR-like protein kinase) 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DQSVAITANAAGTPGYMAPE", "down_seq": "MELGEFSMKSDVYSYGVLVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q0PW40", "url": "https://www.uniprot.org/uniprotkb/Q0PW40" } ], "site_lbl": "Tyr531" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "53", "end_pos": "53" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "431", "end_pos": "431" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q0PW40-1.523.523", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q11207-1.373.373", "start_pos": 373, "end_pos": 373, "uniprot_canonical_ac": "Q11207-1", "length": 637, "uniprot_id": "PARP2_ARATH", "protein_name": "Poly [ADP-ribose] polymerase 2", "refseq_ac": "NP_001329308", "refseq_name": "poly(ADP-ribose) polymerase", "gene_name": "PARP2", "gene_names_uniprotkb": "PARP2; APP; ATPARP1; PARP1; POLY(ADP-RIBOSE) POLYMERASE 1; POLY(ADP-RIBOSE) POLYMERASE; PP; T14P8.19; T14P8_19; poly(ADP-ribose) polymerase 2; poly(ADP-ribose) polymerase", "gene_names_refseq": "APP; ATPARP1; PARP1; PARP2; POLY(ADP-RIBOSE) POLYMERASE 1; POLY(ADP-RIBOSE) POLYMERASE; PP; T14P8.19; T14P8_19; poly(ADP-ribose) polymerase 2; poly(ADP-ribose) polymerase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q11207", "url": "https://www.uniprot.org/uniprotkb/Q11207" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q11207", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q11207" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q11207", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q11207", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EELSGEFYTVIPHDFGFKKM", "down_seq": "QFVIDTPQKLKQKIEMVEAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q11207", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q11207" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser373" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "373", "end_pos": "373" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNY5-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PITSAGCFNDGKESGGGSKM", "down_seq": "FTGSPFFIDRSNSLIAAGCN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSKVSLMYIKPKMVGCELSC", "down_seq": "TSKDSYSNSIPFVEAGCSSN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn170", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ASLPNEPQQVIGIRTENNDG", "down_seq": "STTKVECTVSAFLTDEIYAL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn238", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.285.285", "start_pos": 285, "end_pos": 285, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EHLLAKRYATVSLGWVIQTS", "down_seq": "RSFLDSLALACKDREDYRNT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn285", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q0WNY5-1.304.304", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.304.304", "start_pos": 304, "end_pos": 304, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SNRSFLDSLALACKDREDYR", "down_seq": "TTNLERKCTCGRITISETSY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn304", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q0WNY5-1.285.285", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.60.60", "start_pos": 60, "end_pos": 60, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YPFGIGKDCCLEKYYEIECR", "down_seq": "TTSRKLVPLLSFINKEVVSI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn60", "evidence": [ { "id": "Q0WNY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.526.526", "start_pos": 526, "end_pos": 526, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRHVVKLLGCCLETEVPMLV", "down_seq": "EFIINGNLFKHIHEEESDDY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "site_lbl": "Tyr526" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.613.613", "start_pos": 613, "end_pos": 613, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AKVADFGTSRSVTIDQTHWT", "down_seq": "VISGTVGYVDPEYYQSSQYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "site_lbl": "Thr613" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q0WNY5-1.618.618", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q0WNY5-1.626.626", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.618.618", "start_pos": 618, "end_pos": 618, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGTSRSVTIDQTHWTTVISG", "down_seq": "VGYVDPEYYQSSQYTEKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "site_lbl": "Thr618" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q0WNY5-1.613.613", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WNY5-1.626.626", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.626.626", "start_pos": 626, "end_pos": 626, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "IDQTHWTTVISGTVGYVDPE", "down_seq": "YQSSQYTEKSDVYSFGVILA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "site_lbl": "Tyr626" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q0WNY5-1.613.613", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WNY5-1.618.618", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WNY5-1.723.723", "start_pos": 723, "end_pos": 723, "uniprot_canonical_ac": "Q0WNY5-1", "length": 793, "uniprot_id": "WAKLN_ARATH", "protein_name": "Wall-associated receptor kinase-like 18", "refseq_ac": "NP_194840", "refseq_name": "Wall-associated kinase family protein", "gene_name": "WAKL18", "gene_names_uniprotkb": "WAKL18; F6E21.30; F6E21_30", "gene_names_refseq": "F6E21.30; F6E21_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNY5", "url": "https://www.uniprot.org/uniprotkb/Q0WNY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WNY5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNY5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VAMKCLSSKGKKRPNMREVF", "down_seq": "ELERICTSPEDSQVHNRIDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WNY5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNY5" } ], "site_lbl": "Thr723" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "60", "end_pos": "60" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "526", "end_pos": "526" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P53799-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "P53799-1", "length": 410, "uniprot_id": "FDFT1_ARATH", "protein_name": "Squalene synthase 1", "refseq_ac": "NP_195190", "refseq_name": "squalene synthase 1", "gene_name": "SQS1", "gene_names_uniprotkb": "SQS1; ERG9; SQUALENE SYNTHASE; T4L20.220; T4L20_220; squalene synthase 1", "gene_names_refseq": "ERG9; SQS1; SQUALENE SYNTHASE; T4L20.220; T4L20_220; squalene synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P53799", "url": "https://www.uniprot.org/uniprotkb/P53799" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis thaliana contains a single gene encoding squalene synthase.", "journal": "Plant molecular biology", "date": "2008-05", "authors": "Busquets Antoni, Keim Ver\u00f3nica, Closa Marta, del Arco Ana, Boronat Albert, Arr\u00f3 Montserrat, Ferrer Albert", "evidence": [ { "database": "UniProtKB", "id": "P53799", "url": "https://www.uniprot.org/uniprotkb/P53799" } ], "reference": [ { "type": "PubMed", "id": "18236008", "url": "https://glygen.org/publication/PubMed/18236008" } ] } ], "crossref": [ { "id": "P53799", "url": "https://www.uniprot.org/uniprotkb/P53799", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18236008", "url": "https://glygen.org/publication/PubMed/18236008", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "MHIEDCLKYMVSLRDPSIFR", "down_seq": "CAIPQIMAIGTLALCYNNEQ", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "S", "comment": "Drastic reduction of squalene synthase activity.", "evidence": [ { "database": "UniProtKB", "id": "P53799", "url": "https://www.uniprot.org/uniprotkb/P53799" }, { "database": "PubMed", "id": "18236008", "url": "https://glygen.org/publication/PubMed/18236008" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "287", "end_pos": "287" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38849-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "Q38849-1", "length": 697, "uniprot_id": "KAT2_ARATH", "protein_name": "Potassium channel KAT2", "refseq_ac": "NP_001329801", "refseq_name": "potassium channel KAT1-like protein", "gene_name": "KAT2", "gene_names_uniprotkb": "KAT2; T9A21.140; T9A21_140", "gene_names_refseq": "KAT2; T9A21.140; T9A21_140; VOLTAGE-GATED POTASSIUM CHANNEL 2; potassium channel in Arabidopsis thaliana 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38849", "url": "https://www.uniprot.org/uniprotkb/Q38849" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38849", "url": "https://www.uniprot.org/uniprotkb/Q38849", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FAFDVCSTAPFQSLSLLFKY", "down_seq": "GSEIGFRVLSMLRLWRLRRV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn158", "evidence": [ { "id": "Q38849", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q38849#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38849-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q38849-1", "length": 697, "uniprot_id": "KAT2_ARATH", "protein_name": "Potassium channel KAT2", "refseq_ac": "NP_001329801", "refseq_name": "potassium channel KAT1-like protein", "gene_name": "KAT2", "gene_names_uniprotkb": "KAT2; T9A21.140; T9A21_140", "gene_names_refseq": "KAT2; T9A21.140; T9A21_140; VOLTAGE-GATED POTASSIUM CHANNEL 2; potassium channel in Arabidopsis thaliana 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38849", "url": "https://www.uniprot.org/uniprotkb/Q38849" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38849", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38849", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSISC", "down_seq": "RNFFKRFCVEEYNMDTFKHS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38849", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38849" } ], "site_lbl": "Thr6" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P82281-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "P82281-1", "length": 349, "uniprot_id": "TL29_ARATH", "protein_name": "Thylakoid lumenal 29 kDa protein, chloroplastic", "refseq_ac": "NP_192640", "refseq_name": "ascorbate peroxidase 4", "gene_name": "TL29", "gene_names_uniprotkb": "TL29; APX4; F23J3.40; F23J3_40; ascorbate peroxidase 4; thylakoid lumen 29", "gene_names_refseq": "APX4; F23J3.40; F23J3_40; TL29; ascorbate peroxidase 4; thylakoid lumen 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82281", "url": "https://www.uniprot.org/uniprotkb/P82281" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "P82281", "url": "https://www.uniprot.org/uniprotkb/P82281" }, { "database": "iPTMnet", "id": "P82281", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82281" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "P82281", "url": "https://www.uniprot.org/uniprotkb/P82281", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P82281", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82281", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GANGSIRFSSELSRAENEGL", "down_seq": "DGLSLIEEVKKEIDSISKGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P82281", "url": "https://www.uniprot.org/uniprotkb/P82281" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "P82281", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82281" } ], "site_lbl": "Ser155" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "155", "end_pos": "155" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39203-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q39203-1", "length": 797, "uniprot_id": "SD22_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "refseq_ac": "NP_567172", "refseq_name": "receptor-like protein kinase 4", "gene_name": "RLK4; SD22", "gene_names_uniprotkb": "RLK4; SD22; A_IG005I10.19; A_IG005I10_19; F5I10.19; RLK4; receptor-like protein kinase 4", "gene_names_refseq": "A_IG005I10.19; A_IG005I10_19; RLK4; receptor-like protein kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DGSPVWQSFDNPTDTWLPGM", "down_seq": "VTGLTAMTSWRSLFDPSPGF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn150", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "49", "end_pos": "49" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39203-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "Q39203-1", "length": 797, "uniprot_id": "SD22_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "refseq_ac": "NP_567172", "refseq_name": "receptor-like protein kinase 4", "gene_name": "RLK4; SD22", "gene_names_uniprotkb": "RLK4; SD22; A_IG005I10.19; A_IG005I10_19; F5I10.19; RLK4; receptor-like protein kinase 4", "gene_names_refseq": "A_IG005I10.19; A_IG005I10_19; RLK4; receptor-like protein kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSFNEFQLVYKGTTPYWSTG", "down_seq": "WTGEAFVGVPEMTIPYIYRF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn197", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "49", "end_pos": "49" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39203-1.30.30", "start_pos": 30, "end_pos": 30, "uniprot_canonical_ac": "Q39203-1", "length": 797, "uniprot_id": "SD22_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "refseq_ac": "NP_567172", "refseq_name": "receptor-like protein kinase 4", "gene_name": "RLK4; SD22", "gene_names_uniprotkb": "RLK4; SD22; A_IG005I10.19; A_IG005I10_19; F5I10.19; RLK4; receptor-like protein kinase 4", "gene_names_refseq": "A_IG005I10.19; A_IG005I10_19; RLK4; receptor-like protein kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LLLLFLLPPPSVQSKVIIKG", "down_seq": "QTILSFKAIFRLGFFSTTNG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn30", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "49", "end_pos": "49" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q39203-1.49.49", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39203-1.366.366", "start_pos": 366, "end_pos": 366, "uniprot_canonical_ac": "Q39203-1", "length": 797, "uniprot_id": "SD22_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "refseq_ac": "NP_567172", "refseq_name": "receptor-like protein kinase 4", "gene_name": "RLK4; SD22", "gene_names_uniprotkb": "RLK4; SD22; A_IG005I10.19; A_IG005I10_19; F5I10.19; RLK4; receptor-like protein kinase 4", "gene_names_refseq": "A_IG005I10.19; A_IG005I10_19; RLK4; receptor-like protein kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DVKMSRLQVSKSSCAKTCLG", "down_seq": "SSCVGFYHKEKSNLCKILLE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn366", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "49", "end_pos": "49" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39203-1.397.397", "start_pos": 397, "end_pos": 397, "uniprot_canonical_ac": "Q39203-1", "length": 797, "uniprot_id": "SD22_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "refseq_ac": "NP_567172", "refseq_name": "receptor-like protein kinase 4", "gene_name": "RLK4; SD22", "gene_names_uniprotkb": "RLK4; SD22; A_IG005I10.19; A_IG005I10_19; F5I10.19; RLK4; receptor-like protein kinase 4", "gene_names_refseq": "A_IG005I10.19; A_IG005I10_19; RLK4; receptor-like protein kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KSNLCKILLESPNNLKNSKG", "down_seq": "ISKSIIILCSVVGSISVLGF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn397", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "49", "end_pos": "49" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39203-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q39203-1", "length": 797, "uniprot_id": "SD22_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "refseq_ac": "NP_567172", "refseq_name": "receptor-like protein kinase 4", "gene_name": "RLK4; SD22", "gene_names_uniprotkb": "RLK4; SD22; A_IG005I10.19; A_IG005I10_19; F5I10.19; RLK4; receptor-like protein kinase 4", "gene_names_refseq": "A_IG005I10.19; A_IG005I10_19; RLK4; receptor-like protein kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GNQTILSFKAIFRLGFFSTT", "down_seq": "GSSNWYLGISYASMPTPTHV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn49", "evidence": [ { "id": "Q39203", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q39203#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "49", "end_pos": "49" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q39203-1.30.30", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39203-1.490.490", "start_pos": 490, "end_pos": 490, "uniprot_canonical_ac": "Q39203-1", "length": 797, "uniprot_id": "SD22_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "refseq_ac": "NP_567172", "refseq_name": "receptor-like protein kinase 4", "gene_name": "RLK4; SD22", "gene_names_uniprotkb": "RLK4; SD22; A_IG005I10.19; A_IG005I10_19; F5I10.19; RLK4; receptor-like protein kinase 4", "gene_names_refseq": "A_IG005I10.19; A_IG005I10_19; RLK4; receptor-like protein kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "GGFGAVFKGTLPGSSTFVAV", "down_seq": "RLERPGSGESEFRAEVCTIG", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Impaired serine/threonine-protein kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "49", "end_pos": "49" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39203-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q39203-1", "length": 797, "uniprot_id": "SD22_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2", "refseq_ac": "NP_567172", "refseq_name": "receptor-like protein kinase 4", "gene_name": "RLK4; SD22", "gene_names_uniprotkb": "RLK4; SD22; A_IG005I10.19; A_IG005I10_19; F5I10.19; RLK4; receptor-like protein kinase 4", "gene_names_refseq": "A_IG005I10.19; A_IG005I10_19; RLK4; receptor-like protein kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39203", "url": "https://www.uniprot.org/uniprotkb/Q39203" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "A0A1P8B912", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B912", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RENGDSGEKSDTFEAVGDLR", "down_seq": "DGDVKMSRLQVSKSSCAKTC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B912", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B912" } ], "site_lbl": "Tyr343" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "49", "end_pos": "49" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P84634-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "P84634-1", "length": 1702, "uniprot_id": "DCL4_ARATH", "protein_name": "Dicer-like protein 4", "refseq_ac": "NP_197532", "refseq_name": "dicer-like 4", "gene_name": "DCL4", "gene_names_uniprotkb": "DCL4; ATDCL4; DICER-LIKE 4; F5O24.210; F5O24_210; dicer-like 4", "gene_names_refseq": "ATDCL4; DCL4; DICER-LIKE 4; F5O24.210; F5O24_210; dicer-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P84634", "url": "https://www.uniprot.org/uniprotkb/P84634" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P84634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P84634" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "P84634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P84634", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRDEVDLSLTIP", "down_seq": "KLLGKRDREQKNCEEEKNKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P84634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P84634" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser13" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "751", "end_pos": "751" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P84634-1.751.751", "start_pos": 751, "end_pos": 751, "uniprot_canonical_ac": "P84634-1", "length": 1702, "uniprot_id": "DCL4_ARATH", "protein_name": "Dicer-like protein 4", "refseq_ac": "NP_197532", "refseq_name": "dicer-like 4", "gene_name": "DCL4", "gene_names_uniprotkb": "DCL4; ATDCL4; DICER-LIKE 4; F5O24.210; F5O24_210; dicer-like 4", "gene_names_refseq": "ATDCL4; DCL4; DICER-LIKE 4; F5O24.210; F5O24_210; dicer-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P84634", "url": "https://www.uniprot.org/uniprotkb/P84634" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P84634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P84634" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P84634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P84634", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGVLNDFLLPDSKDEIEDEL", "down_seq": "DDEFDFDNIKGEGCSRGDLY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P84634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P84634" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser751" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "751", "end_pos": "751" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQE7-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q0WQE7-1", "length": 617, "uniprot_id": "AUG3_ARATH", "protein_name": "AUGMIN subunit 3", "refseq_ac": "NP_199663", "refseq_name": "HAUS augmin-like complex subunit", "gene_name": "AUG3", "gene_names_uniprotkb": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "gene_names_refseq": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQE7", "url": "https://www.uniprot.org/uniprotkb/Q0WQE7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LAHKAEALELQRQLRRLQTQ", "down_seq": "DLLTGQSSALIQGRRARVAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr130" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "273", "end_pos": "273" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q0WQE7-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WQE7-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WQE7-1.138.138", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQE7-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "Q0WQE7-1", "length": 617, "uniprot_id": "AUG3_ARATH", "protein_name": "AUGMIN subunit 3", "refseq_ac": "NP_199663", "refseq_name": "HAUS augmin-like complex subunit", "gene_name": "AUG3", "gene_names_uniprotkb": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "gene_names_refseq": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQE7", "url": "https://www.uniprot.org/uniprotkb/Q0WQE7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AEALELQRQLRRLQTQYDLL", "down_seq": "GQSSALIQGRRARVAATSAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr134" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "273", "end_pos": "273" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WQE7-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WQE7-1.137.137", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WQE7-1.138.138", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQE7-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q0WQE7-1", "length": 617, "uniprot_id": "AUG3_ARATH", "protein_name": "AUGMIN subunit 3", "refseq_ac": "NP_199663", "refseq_name": "HAUS augmin-like complex subunit", "gene_name": "AUG3", "gene_names_uniprotkb": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "gene_names_refseq": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQE7", "url": "https://www.uniprot.org/uniprotkb/Q0WQE7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LELQRQLRRLQTQYDLLTGQ", "down_seq": "SALIQGRRARVAATSAVSGQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "273", "end_pos": "273" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q0WQE7-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WQE7-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WQE7-1.138.138", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQE7-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "Q0WQE7-1", "length": 617, "uniprot_id": "AUG3_ARATH", "protein_name": "AUGMIN subunit 3", "refseq_ac": "NP_199663", "refseq_name": "HAUS augmin-like complex subunit", "gene_name": "AUG3", "gene_names_uniprotkb": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "gene_names_refseq": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQE7", "url": "https://www.uniprot.org/uniprotkb/Q0WQE7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELQRQLRRLQTQYDLLTGQS", "down_seq": "ALIQGRRARVAATSAVSGQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser138" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "273", "end_pos": "273" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q0WQE7-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WQE7-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WQE7-1.137.137", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQE7-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "Q0WQE7-1", "length": 617, "uniprot_id": "AUG3_ARATH", "protein_name": "AUGMIN subunit 3", "refseq_ac": "NP_199663", "refseq_name": "HAUS augmin-like complex subunit", "gene_name": "AUG3", "gene_names_uniprotkb": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "gene_names_refseq": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQE7", "url": "https://www.uniprot.org/uniprotkb/Q0WQE7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QWFAKQLDTGPYRLVAEEGK", "down_seq": "KCSWVSLDDTSNMLRDLEKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser240" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "273", "end_pos": "273" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q0WQE7-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQE7-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "Q0WQE7-1", "length": 617, "uniprot_id": "AUG3_ARATH", "protein_name": "AUGMIN subunit 3", "refseq_ac": "NP_199663", "refseq_name": "HAUS augmin-like complex subunit", "gene_name": "AUG3", "gene_names_uniprotkb": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "gene_names_refseq": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQE7", "url": "https://www.uniprot.org/uniprotkb/Q0WQE7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YRLVAEEGKSKCSWVSLDDT", "down_seq": "NMLRDLEKSQHQRVAELQRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser251" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "273", "end_pos": "273" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q0WQE7-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WQE7-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "Q0WQE7-1", "length": 617, "uniprot_id": "AUG3_ARATH", "protein_name": "AUGMIN subunit 3", "refseq_ac": "NP_199663", "refseq_name": "HAUS augmin-like complex subunit", "gene_name": "AUG3", "gene_names_uniprotkb": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "gene_names_refseq": "AUG3; AtAUG3; MJE7.16; MJE7_16; augmin 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WQE7", "url": "https://www.uniprot.org/uniprotkb/Q0WQE7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MLRDLEKSQHQRVAELQRLR", "down_seq": "IFGTSERQWIEAQVENAKQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WQE7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WQE7" } ], "site_lbl": "Ser273" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "273", "end_pos": "273" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P82805-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "P82805-1", "length": 187, "uniprot_id": "TO204_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM20-4", "refseq_ac": "NP_198909", "refseq_name": "translocase of outer membrane 20-4", "gene_name": "TOM20-4", "gene_names_uniprotkb": "TOM20-4; MMG1.2; MMG1_2", "gene_names_refseq": "MMG1.2; MMG1_2; TOM20-4; translocase of outer membrane 20-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" }, { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASQFFQLAVEEQPESELYRK", "down_seq": "LTLASKAPELHTGGTAGPSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser123" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P82805-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P82805-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P82805-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P82805-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P82805-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P82805-1.143.143", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82805-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "P82805-1", "length": 187, "uniprot_id": "TO204_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM20-4", "refseq_ac": "NP_198909", "refseq_name": "translocase of outer membrane 20-4", "gene_name": "TOM20-4", "gene_names_uniprotkb": "TOM20-4; MMG1.2; MMG1_2", "gene_names_refseq": "MMG1.2; MMG1_2; TOM20-4; translocase of outer membrane 20-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" }, { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QFFQLAVEEQPESELYRKSL", "down_seq": "LASKAPELHTGGTAGPSSNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr125" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P82805-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P82805-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P82805-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P82805-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P82805-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P82805-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P82805-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82805-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "P82805-1", "length": 187, "uniprot_id": "TO204_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM20-4", "refseq_ac": "NP_198909", "refseq_name": "translocase of outer membrane 20-4", "gene_name": "TOM20-4", "gene_names_uniprotkb": "TOM20-4; MMG1.2; MMG1_2", "gene_names_refseq": "MMG1.2; MMG1_2; TOM20-4; translocase of outer membrane 20-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" }, { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLAVEEQPESELYRKSLTLA", "down_seq": "KAPELHTGGTAGPSSNSAKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser128" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P82805-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P82805-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P82805-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P82805-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P82805-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P82805-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P82805-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82805-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "P82805-1", "length": 187, "uniprot_id": "TO204_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM20-4", "refseq_ac": "NP_198909", "refseq_name": "translocase of outer membrane 20-4", "gene_name": "TOM20-4", "gene_names_uniprotkb": "TOM20-4; MMG1.2; MMG1_2", "gene_names_refseq": "MMG1.2; MMG1_2; TOM20-4; translocase of outer membrane 20-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" }, { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PESELYRKSLTLASKAPELH", "down_seq": "GGTAGPSSNSAKTMKQKKTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr135" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P82805-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P82805-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P82805-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P82805-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P82805-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P82805-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P82805-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82805-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "P82805-1", "length": 187, "uniprot_id": "TO204_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM20-4", "refseq_ac": "NP_198909", "refseq_name": "translocase of outer membrane 20-4", "gene_name": "TOM20-4", "gene_names_uniprotkb": "TOM20-4; MMG1.2; MMG1_2", "gene_names_refseq": "MMG1.2; MMG1_2; TOM20-4; translocase of outer membrane 20-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" }, { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ELYRKSLTLASKAPELHTGG", "down_seq": "AGPSSNSAKTMKQKKTSEFK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr138" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P82805-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P82805-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P82805-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P82805-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P82805-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P82805-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P82805-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82805-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "P82805-1", "length": 187, "uniprot_id": "TO204_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM20-4", "refseq_ac": "NP_198909", "refseq_name": "translocase of outer membrane 20-4", "gene_name": "TOM20-4", "gene_names_uniprotkb": "TOM20-4; MMG1.2; MMG1_2", "gene_names_refseq": "MMG1.2; MMG1_2; TOM20-4; translocase of outer membrane 20-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" }, { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSLTLASKAPELHTGGTAGP", "down_seq": "SNSAKTMKQKKTSEFKYDVF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser142" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P82805-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P82805-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P82805-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P82805-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P82805-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P82805-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P82805-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82805-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "P82805-1", "length": 187, "uniprot_id": "TO204_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM20-4", "refseq_ac": "NP_198909", "refseq_name": "translocase of outer membrane 20-4", "gene_name": "TOM20-4", "gene_names_uniprotkb": "TOM20-4; MMG1.2; MMG1_2", "gene_names_refseq": "MMG1.2; MMG1_2; TOM20-4; translocase of outer membrane 20-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" }, { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLTLASKAPELHTGGTAGPS", "down_seq": "NSAKTMKQKKTSEFKYDVFG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser143" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P82805-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P82805-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P82805-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P82805-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P82805-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P82805-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P82805-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P82805-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "P82805-1", "length": 187, "uniprot_id": "TO204_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM20-4", "refseq_ac": "NP_198909", "refseq_name": "translocase of outer membrane 20-4", "gene_name": "TOM20-4", "gene_names_uniprotkb": "TOM20-4; MMG1.2; MMG1_2", "gene_names_refseq": "MMG1.2; MMG1_2; TOM20-4; translocase of outer membrane 20-4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P82805", "url": "https://www.uniprot.org/uniprotkb/P82805" }, { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLASKAPELHTGGTAGPSSN", "down_seq": "AKTMKQKKTSEFKYDVFGWV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P82805", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82805" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser145" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "125", "end_pos": "125" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P82805-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P82805-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P82805-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P82805-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P82805-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P82805-1.143.143", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57751-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "P57751-1", "length": 470, "uniprot_id": "UGPA1_ARATH", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "UGP1; UGP2", "gene_names_uniprotkb": "UGP1; UGP2; AtUGP2; MKP11.16; MKP11.26; MKP11_26", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57751", "url": "https://www.uniprot.org/uniprotkb/P57751" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATATEKLPQLKSAVDGLTEM", "down_seq": "ENEKSGFINLVSRYLSGEAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser23" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "413", "end_pos": "413" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57751-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "P57751-1", "length": 470, "uniprot_id": "UGPA1_ARATH", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "UGP1; UGP2", "gene_names_uniprotkb": "UGP1; UGP2; AtUGP2; MKP11.16; MKP11.26; MKP11_26", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57751", "url": "https://www.uniprot.org/uniprotkb/P57751" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARTNPTNPAIELGPEFKKVA", "down_seq": "FLSRFKSIPSIVELDSLKVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser406" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "413", "end_pos": "413" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P57751-1.413.413", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P57751-1.413.413", "start_pos": 413, "end_pos": 413, "uniprot_canonical_ac": "P57751-1", "length": 470, "uniprot_id": "UGPA1_ARATH", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "UGP1; UGP2", "gene_names_uniprotkb": "UGP1; UGP2; AtUGP2; MKP11.16; MKP11.26; MKP11_26", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P57751", "url": "https://www.uniprot.org/uniprotkb/P57751" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P57751-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "F4KGY8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4KGY8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PAIELGPEFKKVASFLSRFK", "down_seq": "IPSIVELDSLKVSGDVWFGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4KGY8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4KGY8" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "P57751", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P57751" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser413" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "23", "end_pos": "23" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "413", "end_pos": "413" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P57751-1.406.406", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WUG6-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IFTSMSFEEGTESSPMADTS", "down_seq": "TTLNWSRHLLAQKTQVTSMF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn171", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q0WUG6-1.175.175", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.175.175", "start_pos": 175, "end_pos": 175, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MSFEEGTESSPMADTSNTTL", "down_seq": "WSRHLLAQKTQVTSMFGADH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn175", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WUG6-1.171.171", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IFDTGIRADHPHFRKIKERT", "down_seq": "WTNEDTLNDNLGHGTFVAGV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn230", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.300.300", "start_pos": 300, "end_pos": 300, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YTSWFLDAFNYAIATDMDVL", "down_seq": "LSIGGPDYLDLPFVEKVWEI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn300", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLFWLRPSTYHPQQQNLNPE", "down_seq": "VTRLESENETKTNYIIRFKQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn44", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q0WUG6-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.513.513", "start_pos": 513, "end_pos": 513, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PYSWPFCRQPLYAGAMPIIF", "down_seq": "TTILNGMGVIGYIESPPTWH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn513", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TYHPQQQNLNPENVTRLESE", "down_seq": "ETKTNYIIRFKQYKPAKDHR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn52", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q0WUG6-1.44.44", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.579.579", "start_pos": 579, "end_pos": 579, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LALHMQIKEEGAQFTGEIEG", "down_seq": "VTVKVYSPPASGESGPRRST", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn579", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.611.611", "start_pos": 611, "end_pos": 611, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GESGPRRSTCSLQLKLKVIP", "down_seq": "PPRAKRILWDQFHSIKYPPG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr611", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.902.902", "start_pos": 902, "end_pos": 902, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KRYSPVIIDEKQLPSRRTDV", "down_seq": "FSTYSSVIGKELICESDSRF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn902", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WUG6-1.954.954", "start_pos": 954, "end_pos": 954, "uniprot_canonical_ac": "Q0WUG6-1", "length": 1038, "uniprot_id": "SBT61_ARATH", "protein_name": "Subtilisin-like protease SBT6.1", "refseq_ac": "NP_197467", "refseq_name": "SITE-1 protease", "gene_name": "S1P; SBT6.1", "gene_names_uniprotkb": "S1P; SBT6.1; ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "gene_names_refseq": "ATS1P; ATSBT6.1; S1P; SITE-1 PROTEASE; SITE-1 protease; T29J13.80; T29J13_80", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WUG6", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VRGRNRRLPGYHGIDLGRGL", "down_seq": "FTVESKRPTRWRSAKEGGEL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn954", "evidence": [ { "id": "Q0WUG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WUG6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "902", "end_pos": "902" }, { "start_pos": "954", "end_pos": "954" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00917-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q00917-1", "length": 807, "uniprot_id": "SUS2_ARATH", "protein_name": "Sucrose synthase 2", "refseq_ac": "NP_199730", "refseq_name": "sucrose synthase 2", "gene_name": "SUS2", "gene_names_uniprotkb": "SUS2; ATSUS2; K21P3.6; K21P3_6; SSA; SUCROSE SYNTHASE; sucrose synthase 2", "gene_names_refseq": "ATSUS2; K21P3.6; K21P3_6; SSA; SUCROSE SYNTHASE FROM ARABIDOPSIS; SUCROSE SYNTHASE; SUS2; sucrose synthase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q00917", "url": "https://www.uniprot.org/uniprotkb/Q00917" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q00917", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00917" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q00917", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00917" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q00917", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00917", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLELDFEPFNATLPRPTRSS", "down_seq": "IGNGVQFLNRHLSSIMFRNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q00917", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00917" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39043-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "Q39043-1", "length": 668, "uniprot_id": "BIP2_ARATH", "protein_name": "Heat shock 70 kDa protein BIP2", "refseq_ac": "NP_851119", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "BIP2", "gene_names_uniprotkb": "BIP2; BIP; HSP70-12; MED37F; MED37_6; MJC20.12; MJC20_12; luminal binding protein", "gene_names_refseq": "BIP2; BIP; MJC20.12; MJC20_12; luminal binding protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39043", "url": "https://www.uniprot.org/uniprotkb/Q39043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ETKVFSPEEISAMILTKMKE", "down_seq": "AEAYLGKKIKDAVVTVPAYF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" } ], "site_lbl": "Thr162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "664", "end_pos": "664" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39043-1.526.526", "start_pos": 526, "end_pos": 526, "uniprot_canonical_ac": "Q39043-1", "length": 668, "uniprot_id": "BIP2_ARATH", "protein_name": "Heat shock 70 kDa protein BIP2", "refseq_ac": "NP_851119", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "BIP2", "gene_names_uniprotkb": "BIP2; BIP; HSP70-12; MED37F; MED37_6; MJC20.12; MJC20_12; luminal binding protein", "gene_names_refseq": "BIP2; BIP; MJC20.12; MJC20_12; luminal binding protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39043", "url": "https://www.uniprot.org/uniprotkb/Q39043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVTFEVDANGILNVKAEDKA", "down_seq": "GKSEKITITNEKGRLSQEEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser526" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "664", "end_pos": "664" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39043-1.656.656", "start_pos": 656, "end_pos": 656, "uniprot_canonical_ac": "Q39043-1", "length": 668, "uniprot_id": "BIP2_ARATH", "protein_name": "Heat shock 70 kDa protein BIP2", "refseq_ac": "NP_851119", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "BIP2", "gene_names_uniprotkb": "BIP2; BIP; HSP70-12; MED37F; MED37_6; MJC20.12; MJC20_12; luminal binding protein", "gene_names_refseq": "BIP2; BIP; MJC20.12; MJC20_12; luminal binding protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39043", "url": "https://www.uniprot.org/uniprotkb/Q39043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NPIITAVYQRSGGAPGAGGE", "down_seq": "STEEEDESHDEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser656" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "664", "end_pos": "664" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q39043-1.664.664", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39043-1.664.664", "start_pos": 664, "end_pos": 664, "uniprot_canonical_ac": "Q39043-1", "length": 668, "uniprot_id": "BIP2_ARATH", "protein_name": "Heat shock 70 kDa protein BIP2", "refseq_ac": "NP_851119", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "BIP2", "gene_names_uniprotkb": "BIP2; BIP; HSP70-12; MED37F; MED37_6; MJC20.12; MJC20_12; luminal binding protein", "gene_names_refseq": "BIP2; BIP; MJC20.12; MJC20_12; luminal binding protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39043", "url": "https://www.uniprot.org/uniprotkb/Q39043" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39043-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "F4K007", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K007", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QRSGGAPGAGGESSTEEEDE", "down_seq": "HDEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4K007", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4K007" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "Q39043", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39043" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser664" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "526", "end_pos": "526" }, { "start_pos": "656", "end_pos": "656" }, { "start_pos": "664", "end_pos": "664" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q39043-1.656.656", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WML0-1.261.261", "start_pos": 261, "end_pos": 261, "uniprot_canonical_ac": "Q0WML0-1", "length": 644, "uniprot_id": "AB27B_ARATH", "protein_name": "ABC transporter B family member 27", "refseq_ac": "NP_198720", "refseq_name": "transporter associated with antigen processing protein 2", "gene_name": "ABCB27", "gene_names_uniprotkb": "ABCB27; ALS1; ALUMINUM SENSITIVE 1; ATP-binding cassette B27; ATTAP2; AtALS1; MXF12.50; MXF12_50; TAP2", "gene_names_refseq": "ABCB27; ALS1; ALUMINUM SENSITIVE 1; ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2; ATP-binding cassette B27; ATTAP2; AtALS1; MXF12.50; MXF12_50; TAP2; transporter associated with antigen processing protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WML0", "url": "https://www.uniprot.org/uniprotkb/Q0WML0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis ALS1 encodes a root tip and stele localized half type ABC transporter required for root growth in an aluminum toxic environment.", "journal": "Planta", "date": "2007-05", "authors": "Larsen Paul B, Cancel Jesse, Rounds Megan, Ochoa Vanessa", "evidence": [ { "database": "UniProtKB", "id": "Q0WML0", "url": "https://www.uniprot.org/uniprotkb/Q0WML0" } ], "reference": [ { "type": "PubMed", "id": "17171374", "url": "https://glygen.org/publication/PubMed/17171374" } ] } ], "crossref": [ { "id": "Q0WML0", "url": "https://www.uniprot.org/uniprotkb/Q0WML0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17171374", "url": "https://glygen.org/publication/PubMed/17171374", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "LRELSHTTQAAAAVAASIAE", "down_seq": "SFGAVRTVRSFAKESYMVSQ", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In als1-1; loss of aluminum tolerance.", "evidence": [ { "database": "UniProtKB", "id": "Q0WML0", "url": "https://www.uniprot.org/uniprotkb/Q0WML0" }, { "database": "PubMed", "id": "17171374", "url": "https://glygen.org/publication/PubMed/17171374" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "261", "end_pos": "261" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "640", "end_pos": "640" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WML0-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q0WML0-1", "length": 644, "uniprot_id": "AB27B_ARATH", "protein_name": "ABC transporter B family member 27", "refseq_ac": "NP_198720", "refseq_name": "transporter associated with antigen processing protein 2", "gene_name": "ABCB27", "gene_names_uniprotkb": "ABCB27; ALS1; ALUMINUM SENSITIVE 1; ATP-binding cassette B27; ATTAP2; AtALS1; MXF12.50; MXF12_50; TAP2", "gene_names_refseq": "ABCB27; ALS1; ALUMINUM SENSITIVE 1; ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2; ATP-binding cassette B27; ATTAP2; AtALS1; MXF12.50; MXF12_50; TAP2; transporter associated with antigen processing protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WML0", "url": "https://www.uniprot.org/uniprotkb/Q0WML0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WML0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WML0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WML0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WML0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGNKKLLTGG", "down_seq": "SKTHGSGSSYRDPLLQNQED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WML0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WML0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "261", "end_pos": "261" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "640", "end_pos": "640" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WML0-1.640.640", "start_pos": 640, "end_pos": 640, "uniprot_canonical_ac": "Q0WML0-1", "length": 644, "uniprot_id": "AB27B_ARATH", "protein_name": "ABC transporter B family member 27", "refseq_ac": "NP_198720", "refseq_name": "transporter associated with antigen processing protein 2", "gene_name": "ABCB27", "gene_names_uniprotkb": "ABCB27; ALS1; ALUMINUM SENSITIVE 1; ATP-binding cassette B27; ATTAP2; AtALS1; MXF12.50; MXF12_50; TAP2", "gene_names_refseq": "ABCB27; ALS1; ALUMINUM SENSITIVE 1; ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2; ATP-binding cassette B27; ATTAP2; AtALS1; MXF12.50; MXF12_50; TAP2; transporter associated with antigen processing protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WML0", "url": "https://www.uniprot.org/uniprotkb/Q0WML0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WML0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WML0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WML0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WML0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLSLNGIYTNLVKRQLQSSS", "down_seq": "VTTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WML0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WML0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser640" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "261", "end_pos": "261" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "640", "end_pos": "640" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SRAGNDGLGVTVTPGTVAYV", "down_seq": "TGGPIPDGADAVVQVEDTKV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr106", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q39054-1.98.98", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39054-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KVYPMPIVAILSTGDELVEP", "down_seq": "AGTLGRGQIRDSNRAMLVAA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr206", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39054-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GEYPVITESRAGNDGLGVTV", "down_seq": "PGTVAYVTTGGPIPDGADAV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr98", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q39054-1.106.106", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39054-1.475.475", "start_pos": 475, "end_pos": 475, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The active site of the molybdenum cofactor biosynthetic protein domain Cnx1G.", "journal": "Archives of biochemistry and biophysics", "date": "2003-03-01", "authors": "Kuper Jochen, Winking Jan, Hecht Hans-J\u00fcrgen, Mendel Ralf R, Schwarz G\u00fcnter", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEKKYDEVPGPEYKVAILTV", "down_seq": "DTVSAGAGPDRSGPRAVSVV", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "Reduced molybdopterin binding. Loss of adenylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q39054-1.485.485", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.485.485", "start_pos": 485, "end_pos": 485, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The active site of the molybdenum cofactor biosynthetic protein domain Cnx1G.", "journal": "Archives of biochemistry and biophysics", "date": "2003-03-01", "authors": "Kuper Jochen, Winking Jan, Hecht Hans-J\u00fcrgen, Mendel Ralf R, Schwarz G\u00fcnter", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "PEYKVAILTVSDTVSAGAGP", "down_seq": "RSGPRAVSVVDSSSEKLGGA", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "S", "comment": "Reduced molybdopterin binding. Loss of adenylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q39054-1.475.475", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.515.515", "start_pos": 515, "end_pos": 515, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutations in the molybdenum cofactor biosynthetic protein Cnx1G from Arabidopsis thaliana define functions for molybdopterin binding, molybdenum insertion, and molybdenum cofactor stabilization.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000-06-06", "authors": "Kuper J, Palmer T, Mendel R R, Schwarz G", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911" } ] }, { "title": "The active site of the molybdenum cofactor biosynthetic protein domain Cnx1G.", "journal": "Archives of biochemistry and biophysics", "date": "2003-03-01", "authors": "Kuper Jochen, Winking Jan, Hecht Hans-J\u00fcrgen, Mendel Ralf R, Schwarz G\u00fcnter", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "VDSSSEKLGGAKVVATAVVP", "down_seq": "EVERIKDILQKWSDVDEMDL", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "H", "comment": "Almost normal molybdopterin binding. Loss adenylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] }, { "sequence_org": "D", "sequence_mut": "N", "comment": "Almost normal molybdopterin binding. Loss adenylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.542.542", "start_pos": 542, "end_pos": 542, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The active site of the molybdenum cofactor biosynthetic protein domain Cnx1G.", "journal": "Archives of biochemistry and biophysics", "date": "2003-03-01", "authors": "Kuper Jochen, Winking Jan, Hecht Hans-J\u00fcrgen, Mendel Ralf R, Schwarz G\u00fcnter", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DILQKWSDVDEMDLILTLGG", "down_seq": "GFTPRDVTPEATKKVIERET", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Strongly reduced molybdopterin binding. Reduced activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Loss of molybdopterin binding. Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] }, { "sequence_org": "T", "sequence_mut": "N", "comment": "Loss of molybdopterin binding. Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] }, { "sequence_org": "T", "sequence_mut": "S", "comment": "Reduced molybdopterin binding. No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] }, { "sequence_org": "T", "sequence_mut": "V", "comment": "Strongly reduced molybdopterin binding. No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q39054-1.547.547", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q39054-1.557.557", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.547.547", "start_pos": 547, "end_pos": 547, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The active site of the molybdenum cofactor biosynthetic protein domain Cnx1G.", "journal": "Archives of biochemistry and biophysics", "date": "2003-03-01", "authors": "Kuper Jochen, Winking Jan, Hecht Hans-J\u00fcrgen, Mendel Ralf R, Schwarz G\u00fcnter", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "WSDVDEMDLILTLGGTGFTP", "down_seq": "DVTPEATKKVIERETPGLLF", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "E", "comment": "No effect on molybdopterin binding. Clear reduction in adenylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q39054-1.542.542", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q39054-1.557.557", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.557.557", "start_pos": 557, "end_pos": 557, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutations in the molybdenum cofactor biosynthetic protein Cnx1G from Arabidopsis thaliana define functions for molybdopterin binding, molybdenum insertion, and molybdenum cofactor stabilization.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000-06-06", "authors": "Kuper J, Palmer T, Mendel R R, Schwarz G", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "LTLGGTGFTPRDVTPEATKK", "down_seq": "IERETPGLLFVMMQESLKIT", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "G", "comment": "Impaired folding. Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q39054-1.542.542", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q39054-1.547.547", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q39054-1.573.573", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.573.573", "start_pos": 573, "end_pos": 573, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The active site of the molybdenum cofactor biosynthetic protein domain Cnx1G.", "journal": "Archives of biochemistry and biophysics", "date": "2003-03-01", "authors": "Kuper Jochen, Winking Jan, Hecht Hans-J\u00fcrgen, Mendel Ralf R, Schwarz G\u00fcnter", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATKKVIERETPGLLFVMMQE", "down_seq": "LKITPFAMLSRSAAGIRGST", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of molybdopterin binding. Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "12590921", "url": "https://glygen.org/publication/PubMed/12590921" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q39054-1.557.557", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q39054-1.583.583", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.583.583", "start_pos": 583, "end_pos": 583, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Synthesis of adenylated molybdopterin: an essential step for molybdenum insertion.", "journal": "The Journal of biological chemistry", "date": "2004-12-31", "authors": "Llamas Angel, Mendel Ralf R, Schwarz G\u00fcnter", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "15504727", "url": "https://glygen.org/publication/PubMed/15504727" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15504727", "url": "https://glygen.org/publication/PubMed/15504727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGLLFVMMQESLKITPFAML", "down_seq": "RSAAGIRGSTLIINMPGNPN", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "15504727", "url": "https://glygen.org/publication/PubMed/15504727" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q39054-1.573.573", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q39054-1.597.597", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.597.597", "start_pos": 597, "end_pos": 597, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutations in the molybdenum cofactor biosynthetic protein Cnx1G from Arabidopsis thaliana define functions for molybdopterin binding, molybdenum insertion, and molybdenum cofactor stabilization.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000-06-06", "authors": "Kuper J, Palmer T, Mendel R R, Schwarz G", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "reference": [ { "type": "PubMed", "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911" } ] } ], "crossref": [ { "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TPFAMLSRSAAGIRGSTLII", "down_seq": "MPGNPNAVAECMEALLPALK", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "L", "comment": "Loss of molybdopterin binding. Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" }, { "database": "PubMed", "id": "10823911", "url": "https://glygen.org/publication/PubMed/10823911" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q39054-1.583.583", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.446.446", "start_pos": 446, "end_pos": 446, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39054", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39054" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39054", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39054", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSVSAIIVSDISAFSIDKKA", "down_seq": "LSEPGSIRKEKKYDEVPGPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39054", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39054" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser446" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q39054-1.452.452", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39054-1.452.452", "start_pos": 452, "end_pos": 452, "uniprot_canonical_ac": "Q39054-1", "length": 670, "uniprot_id": "CNX1_ARATH", "protein_name": "Molybdopterin biosynthesis protein CNX1", "refseq_ac": "", "refseq_name": "", "gene_name": "B73; CNX1", "gene_names_uniprotkb": "B73; CNX1; CHL6; CHLORATE RESISTANT 6; CNX1; CNX; F22D1.6; SIR4; SIRTINOL 4; T10F18.20; T10F18_20", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39054", "url": "https://www.uniprot.org/uniprotkb/Q39054" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39054", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39054" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39054", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39054", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVSDISAFSIDKKASLSEPG", "down_seq": "IRKEKKYDEVPGPEYKVAIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39054", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39054" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser452" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "475", "end_pos": "475" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "597", "end_pos": "597" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "446", "end_pos": "446" }, { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q39054-1.446.446", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93655-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "P93655-1", "length": 940, "uniprot_id": "LONM1_ARATH", "protein_name": "Lon protease homolog 1, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "LON1", "gene_names_uniprotkb": "LON1; F2P16.23; F2P16_23; LON_ARA_ARA; lon protease 1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" }, { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" }, { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.", "journal": "Proteomics", "date": "2009-09", "authors": "Ito Jun, Taylor Nicolas L, Castleden Ian, Weckwerth Wolfram, Millar A Harvey, Heazlewood Joshua L", "evidence": [ { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] } ], "crossref": [ { "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FCSEPTNGEAAAEAETKAVE", "down_seq": "DSEVSDSKSSSAIVPTNPRP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Ser74" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P93655-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P93655-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P93655-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93655-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "P93655-1", "length": 940, "uniprot_id": "LONM1_ARATH", "protein_name": "Lon protease homolog 1, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "LON1", "gene_names_uniprotkb": "LON1; F2P16.23; F2P16_23; LON_ARA_ARA; lon protease 1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" }, { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEPTNGEAAAEAETKAVESD", "down_seq": "EVSDSKSSSAIVPTNPRPED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser76" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P93655-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P93655-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P93655-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93655-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "P93655-1", "length": 940, "uniprot_id": "LONM1_ARATH", "protein_name": "Lon protease homolog 1, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "LON1", "gene_names_uniprotkb": "LON1; F2P16.23; F2P16_23; LON_ARA_ARA; lon protease 1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" }, { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TNGEAAAEAETKAVESDSEV", "down_seq": "DSKSSSAIVPTNPRPEDCLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P93655-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93655-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P93655-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93655-1.81.81", "start_pos": 81, "end_pos": 81, "uniprot_canonical_ac": "P93655-1", "length": 940, "uniprot_id": "LONM1_ARATH", "protein_name": "Lon protease homolog 1, mitochondrial", "refseq_ac": "", "refseq_name": "", "gene_name": "LON1", "gene_names_uniprotkb": "LON1; F2P16.23; F2P16_23; LON_ARA_ARA; lon protease 1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93655", "url": "https://www.uniprot.org/uniprotkb/P93655" }, { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GEAAAEAETKAVESDSEVSD", "down_seq": "KSSSAIVPTNPRPEDCLTVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93655", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93655" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser81" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "74", "end_pos": "74" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P93655-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P93655-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93655-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.1001.1001", "start_pos": 1001, "end_pos": 1001, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] }, { "title": "A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine.", "journal": "RNA (New York, N.Y.)", "date": "2013-05", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] }, { "title": "Distinctive kinetics and substrate specificities of plant and fungal tRNA ligases.", "journal": "RNA (New York, N.Y.)", "date": "2014-04", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RSFLEGKKKSIQEKLERSHV", "down_seq": "LAHKRSHGVATVASYSQHLN", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity due to impaired CPDase activity, but conserved kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" }, { "database": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" }, { "database": "PubMed", "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WL81-1.999.999", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.1060.1060", "start_pos": 1060, "end_pos": 1060, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] }, { "title": "A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine.", "journal": "RNA (New York, N.Y.)", "date": "2013-05", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "LTAHVGSVDGETVVSKNEWP", "down_seq": "VTLWTAEGVTAKEANTLPQL", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity due to reduced CPDase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" }, { "database": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q0WL81-1.1062.1062", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.1062.1062", "start_pos": 1062, "end_pos": 1062, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine.", "journal": "RNA (New York, N.Y.)", "date": "2013-05", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AHVGSVDGETVVSKNEWPHV", "down_seq": "LWTAEGVTAKEANTLPQLYL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Reduced CPDase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WL81-1.1060.1060", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] }, { "title": "A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine.", "journal": "RNA (New York, N.Y.)", "date": "2013-05", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] }, { "title": "Distinctive kinetics and substrate specificities of plant and fungal tRNA ligases.", "journal": "RNA (New York, N.Y.)", "date": "2014-04", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "IRTRMIEMVSKGLATLEVSL", "down_seq": "HSGSLFMYAGHKGGAYAKNS", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity due to impaired ligase activity, but normal end-healing.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" }, { "database": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" }, { "database": "PubMed", "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "PKKEAEFNDFLEKNRMCISM", "down_seq": "LVTAVLGDHGQRPLDDYVVV", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "VADISVPASKDHVKVQGEIL", "down_seq": "GLVARIVSSQSSRDMENVLR", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.541.541", "start_pos": 541, "end_pos": 541, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "ENDGRGEKDGLADDDANLMI", "down_seq": "MKFLTYKLRTFLIRNGLSIL", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q0WL81-1.543.543", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WL81-1.551.551", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.543.543", "start_pos": 543, "end_pos": 543, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "DGRGEKDGLADDDANLMIKM", "down_seq": "FLTYKLRTFLIRNGLSILFK", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WL81-1.541.541", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WL81-1.551.551", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.700.701", "start_pos": 700, "end_pos": 701, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine.", "journal": "RNA (New York, N.Y.)", "date": "2013-05", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] }, { "title": "Distinctive kinetics and substrate specificities of plant and fungal tRNA ligases.", "journal": "RNA (New York, N.Y.)", "date": "2014-04", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "KS", "start_aa": "K", "up_seq": "EAVQKDEGLIVFFPGIPGSA", "down_seq": "ALCKELLNAPGGFGDDRPVH", "mutagenesis": [ { "sequence_org": "KS", "sequence_mut": "AA", "comment": "Loss of kinase activity, but conserved CPDase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" }, { "database": "PubMed", "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "upstream", "id": "Q0WL81-1.701.701", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.701.701", "start_pos": 701, "end_pos": 701, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVQKDEGLIVFFPGIPGSAK", "down_seq": "ALCKELLNAPGGFGDDRPVH", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "downstream", "id": "Q0WL81-1.700.701", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.726.726", "start_pos": 726, "end_pos": 726, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] }, { "title": "A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine.", "journal": "RNA (New York, N.Y.)", "date": "2013-05", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] }, { "title": "Distinctive kinetics and substrate specificities of plant and fungal tRNA ligases.", "journal": "RNA (New York, N.Y.)", "date": "2014-04", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "ELLNAPGGFGDDRPVHTLMG", "down_seq": "LVKGKYWPKVADERRKKPQS", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of tRNA ligase activity due to impaired kinase activity, but conserved CPDase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" }, { "database": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" }, { "database": "PubMed", "id": "24554441", "url": "https://glygen.org/publication/PubMed/24554441" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q0WL81-1.746.746", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.804.804", "start_pos": 804, "end_pos": 804, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "TDTNPYSLDALAVFMFRVLQ", "down_seq": "VNHPGKLDKESSNAGYVLLM", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduced tRNA ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.999.999", "start_pos": 999, "end_pos": 999, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.", "journal": "Nucleic acids research", "date": "2006", "authors": "Wang Li Kai, Schwer Beate, Englert Markus, Beier Hildburg, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" } ] }, { "title": "A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine.", "journal": "RNA (New York, N.Y.)", "date": "2013-05", "authors": "Remus Barbara S, Shuman Stewart", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "reference": [ { "type": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] } ], "crossref": [ { "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "TMRSFLEGKKKSIQEKLERS", "down_seq": "VTLAHKRSHGVATVASYSQH", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Reduced tRNA ligase activity due to reduced CPDase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" }, { "database": "PubMed", "id": "16428247", "url": "https://glygen.org/publication/PubMed/16428247" }, { "database": "PubMed", "id": "23515942", "url": "https://glygen.org/publication/PubMed/23515942" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q0WL81-1.1001.1001", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WL81-1.551.551", "start_pos": 551, "end_pos": 551, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LADDDANLMIKMKFLTYKLR", "down_seq": "FLIRNGLSILFKDGAAAYKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81" } ], "site_lbl": "Thr551" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q0WL81-1.541.541", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WL81-1.543.543", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL81-1.639.639", "start_pos": 639, "end_pos": 639, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEPFLEQYAKRSPKNHILIG", "down_seq": "AGNLVRTEDFLAIVDGDLDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81" } ], "site_lbl": "Ser639" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL81-1.746.746", "start_pos": 746, "end_pos": 746, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLVKGKYWPKVADERRKKPQ", "down_seq": "IMLADKNAPNEDVWRQIEDM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81" } ], "site_lbl": "Ser746" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q0WL81-1.726.726", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL81-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGSSSATEVGKTSAVSQIGS", "down_seq": "GDTKVGLNLSKIFGGNLLEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81" } ], "site_lbl": "Ser82" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q0WL81-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WL81-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "Q0WL81-1", "length": 1104, "uniprot_id": "RNL_ARATH", "protein_name": "tRNA ligase 1", "refseq_ac": "NP_172269", "refseq_name": "RNAligase", "gene_name": "RNL", "gene_names_uniprotkb": "RNL; ATRNL; AtRLG1; RLG1; RNAligase; T6D22.1; T6D22_1; TRNA LIGASE", "gene_names_refseq": "ARABIDOPSIS THALIANA RNA LIGASE; ATRNL; AtRLG1; RNAligase; RNL; T6D22.1; T6D22_1; TRNA LIGASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WL81", "url": "https://www.uniprot.org/uniprotkb/Q0WL81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSATEVGKTSAVSQIGSSGD", "down_seq": "KVGLNLSKIFGGNLLEKFSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WL81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WL81" } ], "site_lbl": "Thr85" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1001", "end_pos": "1001" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "700", "end_pos": "701" }, { "start_pos": "701", "end_pos": "701" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "999", "end_pos": "999" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "551", "end_pos": "551" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WL81-1.82.82", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WV13-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "Q0WV13-1", "length": 533, "uniprot_id": "GAUTD_ARATH", "protein_name": "Probable galacturonosyltransferase 13", "refseq_ac": "NP_001118545", "refseq_name": "galacturonosyltransferase 13", "gene_name": "GAUT13", "gene_names_uniprotkb": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "gene_names_refseq": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AVESHNSIRNYYHGNHIAGA", "down_seq": "LSETTPRTFASKLQSRSPKY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn306", "evidence": [ { "id": "Q0WV13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WV13#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "306", "end_pos": "306" }, { "start_pos": "396", "end_pos": "396" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "520", "end_pos": "520" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q0WV13-1.317.317", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WV13-1.396.396", "start_pos": 396, "end_pos": 396, "uniprot_canonical_ac": "Q0WV13-1", "length": 533, "uniprot_id": "GAUTD_ARATH", "protein_name": "Probable galacturonosyltransferase 13", "refseq_ac": "NP_001118545", "refseq_name": "galacturonosyltransferase 13", "gene_name": "GAUT13", "gene_names_uniprotkb": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "gene_names_refseq": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VETCRGEDVWVMSKRLRNYF", "down_seq": "FSHPLIAKHLDPEECAWAYG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn396", "evidence": [ { "id": "Q0WV13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WV13#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "306", "end_pos": "306" }, { "start_pos": "396", "end_pos": "396" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "520", "end_pos": "520" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WV13-1.445.445", "start_pos": 445, "end_pos": 445, "uniprot_canonical_ac": "Q0WV13-1", "length": 533, "uniprot_id": "GAUTD_ARATH", "protein_name": "Probable galacturonosyltransferase 13", "refseq_ac": "NP_001118545", "refseq_name": "galacturonosyltransferase 13", "gene_name": "GAUT13", "gene_names_uniprotkb": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "gene_names_refseq": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WRKTNIRETYHSWLKENLKS", "down_seq": "LTMWKLGTLPPALIAFKGHV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn445", "evidence": [ { "id": "Q0WV13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WV13#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "306", "end_pos": "306" }, { "start_pos": "396", "end_pos": "396" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "520", "end_pos": "520" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q0WV13-1.433.433", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WV13-1.520.520", "start_pos": 520, "end_pos": 520, "uniprot_canonical_ac": "Q0WV13-1", "length": 533, "uniprot_id": "GAUTD_ARATH", "protein_name": "Probable galacturonosyltransferase 13", "refseq_ac": "NP_001118545", "refseq_name": "galacturonosyltransferase 13", "gene_name": "GAUT13", "gene_names_uniprotkb": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "gene_names_refseq": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SKPWLEIGFEHLRPFWTKYV", "down_seq": "YSNDFIKNCHILE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn520", "evidence": [ { "id": "Q0WV13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WV13#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "306", "end_pos": "306" }, { "start_pos": "396", "end_pos": "396" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "520", "end_pos": "520" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WV13-1.317.317", "start_pos": 317, "end_pos": 317, "uniprot_canonical_ac": "Q0WV13-1", "length": 533, "uniprot_id": "GAUTD_ARATH", "protein_name": "Probable galacturonosyltransferase 13", "refseq_ac": "NP_001118545", "refseq_name": "galacturonosyltransferase 13", "gene_name": "GAUT13", "gene_names_uniprotkb": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "gene_names_refseq": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WV13", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WV13", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YHGNHIAGANLSETTPRTFA", "down_seq": "KLQSRSPKYISLLNHLRIYL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WV13", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WV13" } ], "site_lbl": "Ser317" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "306", "end_pos": "306" }, { "start_pos": "396", "end_pos": "396" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "520", "end_pos": "520" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q0WV13-1.306.306", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WV13-1.433.433", "start_pos": 433, "end_pos": 433, "uniprot_canonical_ac": "Q0WV13-1", "length": 533, "uniprot_id": "GAUTD_ARATH", "protein_name": "Probable galacturonosyltransferase 13", "refseq_ac": "NP_001118545", "refseq_name": "galacturonosyltransferase 13", "gene_name": "GAUT13", "gene_names_uniprotkb": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "gene_names_refseq": "GAUT13; T4P13.28; T4P13_28; galacturonosyltransferase 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WV13", "url": "https://www.uniprot.org/uniprotkb/Q0WV13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q0WV13-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WV13-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "Q0WV13", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WV13", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WAYGMNIFDLRTWRKTNIRE", "down_seq": "YHSWLKENLKSNLTMWKLGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WV13", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WV13" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Thr433" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "306", "end_pos": "306" }, { "start_pos": "396", "end_pos": "396" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "520", "end_pos": "520" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q0WV13-1.445.445", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39237-1.260.260", "start_pos": 260, "end_pos": 260, "uniprot_canonical_ac": "Q39237-1", "length": 368, "uniprot_id": "TGA1_ARATH", "protein_name": "Transcription factor TGA1", "refseq_ac": "NP_001032147", "refseq_name": "bZIP transcription factor family protein", "gene_name": "TGA1", "gene_names_uniprotkb": "TGA1; BZIP47; MQN23.15; MQN23_15", "gene_names_refseq": "MQN23.15; MQN23_15; TGA1; TGACG sequence-specific binding protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39237", "url": "https://www.uniprot.org/uniprotkb/Q39237" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis NPR1 disease resistance protein is a novel cofactor that confers redox regulation of DNA binding activity to the basic domain/leucine zipper transcription factor TGA1.", "journal": "The Plant cell", "date": "2003-09", "authors": "Despr\u00e9s Charles, Chubak Catherine, Rochon Amanda, Clark Rena, Bethune Terry, Desveaux Darrell, Fobert Pierre R", "evidence": [ { "database": "UniProtKB", "id": "Q39237", "url": "https://www.uniprot.org/uniprotkb/Q39237" } ], "reference": [ { "type": "PubMed", "id": "12953119", "url": "https://glygen.org/publication/PubMed/12953119" } ] } ], "crossref": [ { "id": "Q39237", "url": "https://www.uniprot.org/uniprotkb/Q39237", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12953119", "url": "https://glygen.org/publication/PubMed/12953119", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "LLKVLLPHFDVLTDQQLLDV", "down_seq": "NLKQSCQQAEDALTQGMEKL", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "N", "comment": "Gain of interaction with NPR1; when associated with S-266.", "evidence": [ { "database": "UniProtKB", "id": "Q39237", "url": "https://www.uniprot.org/uniprotkb/Q39237" }, { "database": "PubMed", "id": "12953119", "url": "https://glygen.org/publication/PubMed/12953119" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "260", "end_pos": "260" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q39237-1.266.266", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39237-1.266.266", "start_pos": 266, "end_pos": 266, "uniprot_canonical_ac": "Q39237-1", "length": 368, "uniprot_id": "TGA1_ARATH", "protein_name": "Transcription factor TGA1", "refseq_ac": "NP_001032147", "refseq_name": "bZIP transcription factor family protein", "gene_name": "TGA1", "gene_names_uniprotkb": "TGA1; BZIP47; MQN23.15; MQN23_15", "gene_names_refseq": "MQN23.15; MQN23_15; TGA1; TGACG sequence-specific binding protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39237", "url": "https://www.uniprot.org/uniprotkb/Q39237" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis NPR1 disease resistance protein is a novel cofactor that confers redox regulation of DNA binding activity to the basic domain/leucine zipper transcription factor TGA1.", "journal": "The Plant cell", "date": "2003-09", "authors": "Despr\u00e9s Charles, Chubak Catherine, Rochon Amanda, Clark Rena, Bethune Terry, Desveaux Darrell, Fobert Pierre R", "evidence": [ { "database": "UniProtKB", "id": "Q39237", "url": "https://www.uniprot.org/uniprotkb/Q39237" } ], "reference": [ { "type": "PubMed", "id": "12953119", "url": "https://glygen.org/publication/PubMed/12953119" } ] } ], "crossref": [ { "id": "Q39237", "url": "https://www.uniprot.org/uniprotkb/Q39237", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12953119", "url": "https://glygen.org/publication/PubMed/12953119", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "PHFDVLTDQQLLDVCNLKQS", "down_seq": "QQAEDALTQGMEKLQHTLAD", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Gain of interaction with NPR1; when associated with N-260.", "evidence": [ { "database": "UniProtKB", "id": "Q39237", "url": "https://www.uniprot.org/uniprotkb/Q39237" }, { "database": "PubMed", "id": "12953119", "url": "https://glygen.org/publication/PubMed/12953119" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "260", "end_pos": "260" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q39237-1.260.260", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46690-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "P46690-1", "length": 106, "uniprot_id": "GASA4_ARATH", "protein_name": "Gibberellin-regulated protein 4", "refseq_ac": "NP_197027", "refseq_name": "GAST1 protein homolog 4", "gene_name": "GASA4", "gene_names_uniprotkb": "GASA4; F8M21.120; F8M21_120; GAST1 protein homolog 4", "gene_names_refseq": "F8M21.120; F8M21_120; GASA4; GAST1 protein homolog 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis cysteine-rich protein GASA4 promotes GA responses and exhibits redox activity in bacteria and in planta.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-12", "authors": "Rubinovich Lior, Weiss David", "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" } ], "reference": [ { "type": "PubMed", "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681" } ] } ], "crossref": [ { "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "CDRRCKKTQYHKACITFCNK", "down_seq": "CRKCLCVPPGYYGNKQVCSC", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of redox activity and ability to promote gibberellin responses; when associated with A-73; A-76 and A-78.", "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" }, { "database": "PubMed", "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P46690-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P46690-1.76.76", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P46690-1.78.78", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46690-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "P46690-1", "length": 106, "uniprot_id": "GASA4_ARATH", "protein_name": "Gibberellin-regulated protein 4", "refseq_ac": "NP_197027", "refseq_name": "GAST1 protein homolog 4", "gene_name": "GASA4", "gene_names_uniprotkb": "GASA4; F8M21.120; F8M21_120; GAST1 protein homolog 4", "gene_names_refseq": "F8M21.120; F8M21_120; GASA4; GAST1 protein homolog 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis cysteine-rich protein GASA4 promotes GA responses and exhibits redox activity in bacteria and in planta.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-12", "authors": "Rubinovich Lior, Weiss David", "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" } ], "reference": [ { "type": "PubMed", "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681" } ] } ], "crossref": [ { "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "DRRCKKTQYHKACITFCNKC", "down_seq": "RKCLCVPPGYYGNKQVCSCY", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of redox activity and ability to promote gibberellin responses; when associated with A-72; A-76 and A-78.", "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" }, { "database": "PubMed", "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P46690-1.72.72", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P46690-1.76.76", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P46690-1.78.78", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46690-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "P46690-1", "length": 106, "uniprot_id": "GASA4_ARATH", "protein_name": "Gibberellin-regulated protein 4", "refseq_ac": "NP_197027", "refseq_name": "GAST1 protein homolog 4", "gene_name": "GASA4", "gene_names_uniprotkb": "GASA4; F8M21.120; F8M21_120; GAST1 protein homolog 4", "gene_names_refseq": "F8M21.120; F8M21_120; GASA4; GAST1 protein homolog 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis cysteine-rich protein GASA4 promotes GA responses and exhibits redox activity in bacteria and in planta.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-12", "authors": "Rubinovich Lior, Weiss David", "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" } ], "reference": [ { "type": "PubMed", "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681" } ] } ], "crossref": [ { "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "CKKTQYHKACITFCNKCCRK", "down_seq": "LCVPPGYYGNKQVCSCYNNW", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of redox activity and ability to promote gibberellin responses; when associated with A-72; A-73 and A-78.", "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" }, { "database": "PubMed", "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P46690-1.72.72", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P46690-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P46690-1.78.78", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46690-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "P46690-1", "length": 106, "uniprot_id": "GASA4_ARATH", "protein_name": "Gibberellin-regulated protein 4", "refseq_ac": "NP_197027", "refseq_name": "GAST1 protein homolog 4", "gene_name": "GASA4", "gene_names_uniprotkb": "GASA4; F8M21.120; F8M21_120; GAST1 protein homolog 4", "gene_names_refseq": "F8M21.120; F8M21_120; GASA4; GAST1 protein homolog 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis cysteine-rich protein GASA4 promotes GA responses and exhibits redox activity in bacteria and in planta.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-12", "authors": "Rubinovich Lior, Weiss David", "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" } ], "reference": [ { "type": "PubMed", "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681" } ] } ], "crossref": [ { "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "KTQYHKACITFCNKCCRKCL", "down_seq": "VPPGYYGNKQVCSCYNNWKT", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of redox activity and ability to promote gibberellin responses; when associated with A-72; A-73 and A-76.", "evidence": [ { "database": "UniProtKB", "id": "P46690", "url": "https://www.uniprot.org/uniprotkb/P46690" }, { "database": "PubMed", "id": "21143681", "url": "https://glygen.org/publication/PubMed/21143681" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P46690-1.72.72", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P46690-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P46690-1.76.76", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39250-1.100.100", "start_pos": 100, "end_pos": 100, "uniprot_canonical_ac": "Q39250-1", "length": 139, "uniprot_id": "ADF1_ARATH", "protein_name": "Actin-depolymerizing factor 1", "refseq_ac": "NP_190187", "refseq_name": "actin depolymerizing factor 1", "gene_name": "ADF1", "gene_names_uniprotkb": "ADF1; ATADF1; F16L2_220; actin depolymerizing factor 1; atadf", "gene_names_refseq": "ADF1; ATADF1; actin depolymerizing factor 1; atadf", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis AtADF1 is functionally affected by mutations on actin binding sites.", "journal": "Journal of integrative plant biology", "date": "2013-03", "authors": "Dong Chun-Hai, Tang Wei-Ping, Liu Jia-Yao", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "reference": [ { "type": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "crossref": [ { "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "CQKSKIFFIAWCPDIAKVRS", "down_seq": "MIYASSKDRFKRELDGIQVE", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Reduces binding affinity to both G-actin and F-actin, and actin-depolimerizing activity; when associated with A-98.", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q39250-1.82.82", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39250-1.98.98", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39250-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "Q39250-1", "length": 139, "uniprot_id": "ADF1_ARATH", "protein_name": "Actin-depolymerizing factor 1", "refseq_ac": "NP_190187", "refseq_name": "actin depolymerizing factor 1", "gene_name": "ADF1", "gene_names_uniprotkb": "ADF1; ATADF1; F16L2_220; actin depolymerizing factor 1; atadf", "gene_names_refseq": "ADF1; ATADF1; actin depolymerizing factor 1; atadf", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis AtADF1 is functionally affected by mutations on actin binding sites.", "journal": "Journal of integrative plant biology", "date": "2013-03", "authors": "Dong Chun-Hai, Tang Wei-Ping, Liu Jia-Yao", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "reference": [ { "type": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "crossref": [ { "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "DGIQVELQATDPTEMDLDVF", "down_seq": "SRAN", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces binding affinity to F-actin and actin-depolimerizing activity; when associated with A-82 and A-137.", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q39250-1.137.137", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39250-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q39250-1", "length": 139, "uniprot_id": "ADF1_ARATH", "protein_name": "Actin-depolymerizing factor 1", "refseq_ac": "NP_190187", "refseq_name": "actin depolymerizing factor 1", "gene_name": "ADF1", "gene_names_uniprotkb": "ADF1; ATADF1; F16L2_220; actin depolymerizing factor 1; atadf", "gene_names_refseq": "ADF1; ATADF1; actin depolymerizing factor 1; atadf", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis AtADF1 is functionally affected by mutations on actin binding sites.", "journal": "Journal of integrative plant biology", "date": "2013-03", "authors": "Dong Chun-Hai, Tang Wei-Ping, Liu Jia-Yao", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "reference": [ { "type": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "crossref": [ { "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "IQVELQATDPTEMDLDVFRS", "down_seq": "AN", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces binding affinity to F-actin and actin-depolimerizing activity; when associated with A-82 and A-135.", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q39250-1.135.135", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39250-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q39250-1", "length": 139, "uniprot_id": "ADF1_ARATH", "protein_name": "Actin-depolymerizing factor 1", "refseq_ac": "NP_190187", "refseq_name": "actin depolymerizing factor 1", "gene_name": "ADF1", "gene_names_uniprotkb": "ADF1; ATADF1; F16L2_220; actin depolymerizing factor 1; atadf", "gene_names_refseq": "ADF1; ATADF1; actin depolymerizing factor 1; atadf", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis CDPK6 phosphorylates ADF1 at N-terminal serine 6 predominantly.", "journal": "Plant cell reports", "date": "2013-11", "authors": "Dong Chun-Hai, Hong Yan", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "iPTMnet", "id": "Q39250", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39250" } ], "reference": [ { "type": "PubMed", "id": "23903947", "url": "https://glygen.org/publication/PubMed/23903947" } ] }, { "title": "Computational Study of the Binding Mechanism of Actin-Depolymerizing Factor 1 with Actin in Arabidopsis thaliana.", "journal": "PloS one", "date": "2016", "authors": "Du Juan, Wang Xue, Dong Chun-Hai, Yang Jian Ming, Yao Xiao Jun", "evidence": [ { "database": "iPTMnet", "id": "Q39250", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39250" } ], "reference": [ { "type": "PubMed", "id": "27414648", "url": "https://glygen.org/publication/PubMed/27414648" } ] } ], "crossref": [ { "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23903947", "url": "https://glygen.org/publication/PubMed/23903947", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39250", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39250", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27414648", "url": "https://glygen.org/publication/PubMed/27414648", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MANAA", "down_seq": "GMAVHDDCKLRFLELKAKRT", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation by CPK3/CDPK6.", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "PubMed", "id": "23903947", "url": "https://glygen.org/publication/PubMed/23903947" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Loss of phosphorylation by CPK3/CDPK6.", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "PubMed", "id": "23903947", "url": "https://glygen.org/publication/PubMed/23903947" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CPK3", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "iPTMnet", "id": "Q39250", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39250" }, { "database": "PubMed", "id": "23903947", "url": "https://glygen.org/publication/PubMed/23903947" }, { "database": "PubMed", "id": "27414648", "url": "https://glygen.org/publication/PubMed/27414648" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39250-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "Q39250-1", "length": 139, "uniprot_id": "ADF1_ARATH", "protein_name": "Actin-depolymerizing factor 1", "refseq_ac": "NP_190187", "refseq_name": "actin depolymerizing factor 1", "gene_name": "ADF1", "gene_names_uniprotkb": "ADF1; ATADF1; F16L2_220; actin depolymerizing factor 1; atadf", "gene_names_refseq": "ADF1; ATADF1; actin depolymerizing factor 1; atadf", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis AtADF1 is functionally affected by mutations on actin binding sites.", "journal": "Journal of integrative plant biology", "date": "2013-03", "authors": "Dong Chun-Hai, Tang Wei-Ping, Liu Jia-Yao", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "reference": [ { "type": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "crossref": [ { "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "ADECRYAIYDFDFVTAENCQ", "down_seq": "SKIFFIAWCPDIAKVRSKMI", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Reduces binding affinity to F-actin and actin-depolimerizing activity; when associated with A-135 and A-137.", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q39250-1.98.98", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q39250-1.100.100", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39250-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "Q39250-1", "length": 139, "uniprot_id": "ADF1_ARATH", "protein_name": "Actin-depolymerizing factor 1", "refseq_ac": "NP_190187", "refseq_name": "actin depolymerizing factor 1", "gene_name": "ADF1", "gene_names_uniprotkb": "ADF1; ATADF1; F16L2_220; actin depolymerizing factor 1; atadf", "gene_names_refseq": "ADF1; ATADF1; actin depolymerizing factor 1; atadf", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis AtADF1 is functionally affected by mutations on actin binding sites.", "journal": "Journal of integrative plant biology", "date": "2013-03", "authors": "Dong Chun-Hai, Tang Wei-Ping, Liu Jia-Yao", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" } ], "reference": [ { "type": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "crossref": [ { "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "ENCQKSKIFFIAWCPDIAKV", "down_seq": "SKMIYASSKDRFKRELDGIQ", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces binding affinity to both G-actin and F-actin, and actin-depolimerizing activity; when associated with A-100.", "evidence": [ { "database": "UniProtKB", "id": "Q39250", "url": "https://www.uniprot.org/uniprotkb/Q39250" }, { "database": "PubMed", "id": "23190411", "url": "https://glygen.org/publication/PubMed/23190411" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q39250-1.82.82", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39250-1.100.100", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59169-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "P59169-1", "length": 136, "uniprot_id": "H33_ARATH", "protein_name": "Histone H3.3", "refseq_ac": "NP_001031816", "refseq_name": "Histone superfamily protein", "gene_name": "H33; HTR4; HTR5; HTR8", "gene_names_uniprotkb": "H33; HTR4; HTR5; HTR8; H3.3; T30N20_250; T5J17.200; T5J17.210; T5J17_200; T5K6.6; histone 3.3", "gene_names_refseq": "H3.3; T5J17.210; histone 3.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication.", "journal": "Science (New York, N.Y.)", "date": "2014-03-14", "authors": "Jacob Yannick, Bergamin Elisa, Donoghue Mark T A, Mongeon Vanessa, LeBlanc Chantal, Voigt Philipp, Underwood Charles J, Brunzelle Joseph S, Michaels Scott D, Reinberg Danny, Couture Jean-Fran\u00e7ois, Martienssen Robert A", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" } ], "reference": [ { "type": "PubMed", "id": "24626927", "url": "https://glygen.org/publication/PubMed/24626927" } ] } ], "crossref": [ { "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24626927", "url": "https://glygen.org/publication/PubMed/24626927", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TGGKAPRKQLATKAARKSAP", "down_seq": "TGGVKKPHRYRPGTVALREI", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "H3K27me1 methylation by ATXR5/6 restored.", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "PubMed", "id": "24626927", "url": "https://glygen.org/publication/PubMed/24626927" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "32", "end_pos": "32" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P59169-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P59169-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59169-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "P59169-1", "length": 136, "uniprot_id": "H33_ARATH", "protein_name": "Histone H3.3", "refseq_ac": "NP_001031816", "refseq_name": "Histone superfamily protein", "gene_name": "H33; HTR4; HTR5; HTR8", "gene_names_uniprotkb": "H33; HTR4; HTR5; HTR8; H3.3; T30N20_250; T5J17.200; T5J17.210; T5J17_200; T5K6.6; histone 3.3", "gene_names_refseq": "H3.3; T5J17.210; histone 3.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Novel phosphorylation of histone H3 at threonine 11 that temporally correlates with condensation of mitotic and meiotic chromosomes in plant cells.", "journal": "Cytogenetic and genome research", "date": "2005", "authors": "Houben A, Demidov D, Rutten T, Scheidtmann K H", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "iPTMnet", "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169" } ], "reference": [ { "type": "PubMed", "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571" } ] }, { "title": "The temporal and spatial pattern of histone H3 phosphorylation at serine 28 and serine 10 is similar in plants but differs between mono- and polycentric chromosomes.", "journal": "Cytogenetic and genome research", "date": "2003", "authors": "Gernand D, Demidov D, Houben A", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "iPTMnet", "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169" } ], "reference": [ { "type": "PubMed", "id": "14610360", "url": "https://glygen.org/publication/PubMed/14610360" } ] } ], "crossref": [ { "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14610360", "url": "https://glygen.org/publication/PubMed/14610360", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MARTKQTARK", "down_seq": "TGGKAPRKQLATKAARKSAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "PubMed", "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571" }, { "database": "PubMed", "id": "14610360", "url": "https://glygen.org/publication/PubMed/14610360" }, { "database": "iPTMnet", "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "32", "end_pos": "32" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P59169-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P59169-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59169-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "P59169-1", "length": 136, "uniprot_id": "H33_ARATH", "protein_name": "Histone H3.3", "refseq_ac": "NP_001031816", "refseq_name": "Histone superfamily protein", "gene_name": "H33; HTR4; HTR5; HTR8", "gene_names_uniprotkb": "H33; HTR4; HTR5; HTR8; H3.3; T30N20_250; T5J17.200; T5J17.210; T5J17_200; T5K6.6; histone 3.3", "gene_names_refseq": "H3.3; T5J17.210; histone 3.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Novel phosphorylation of histone H3 at threonine 11 that temporally correlates with condensation of mitotic and meiotic chromosomes in plant cells.", "journal": "Cytogenetic and genome research", "date": "2005", "authors": "Houben A, Demidov D, Rutten T, Scheidtmann K H", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "iPTMnet", "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169" } ], "reference": [ { "type": "PubMed", "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571" } ] } ], "crossref": [ { "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MARTKQTARKS", "down_seq": "GGKAPRKQLATKAARKSAPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "PubMed", "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571" }, { "database": "iPTMnet", "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169" } ], "site_lbl": "Thr12" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "32", "end_pos": "32" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P59169-1.11.11", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P59169-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P59169-1.32.32", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59169-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "P59169-1", "length": 136, "uniprot_id": "H33_ARATH", "protein_name": "Histone H3.3", "refseq_ac": "NP_001031816", "refseq_name": "Histone superfamily protein", "gene_name": "H33; HTR4; HTR5; HTR8", "gene_names_uniprotkb": "H33; HTR4; HTR5; HTR8; H3.3; T30N20_250; T5J17.200; T5J17.210; T5J17_200; T5K6.6; histone 3.3", "gene_names_refseq": "H3.3; T5J17.210; histone 3.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Novel phosphorylation of histone H3 at threonine 11 that temporally correlates with condensation of mitotic and meiotic chromosomes in plant cells.", "journal": "Cytogenetic and genome research", "date": "2005", "authors": "Houben A, Demidov D, Rutten T, Scheidtmann K H", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "iPTMnet", "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169" } ], "reference": [ { "type": "PubMed", "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571" } ] }, { "title": "The temporal and spatial pattern of histone H3 phosphorylation at serine 28 and serine 10 is similar in plants but differs between mono- and polycentric chromosomes.", "journal": "Cytogenetic and genome research", "date": "2003", "authors": "Gernand D, Demidov D, Houben A", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "iPTMnet", "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169" } ], "reference": [ { "type": "PubMed", "id": "14610360", "url": "https://glygen.org/publication/PubMed/14610360" } ] } ], "crossref": [ { "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14610360", "url": "https://glygen.org/publication/PubMed/14610360", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKSTGGKAPRKQLATKAARK", "down_seq": "APTTGGVKKPHRYRPGTVAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P59169", "url": "https://www.uniprot.org/uniprotkb/P59169" }, { "database": "PubMed", "id": "15753571", "url": "https://glygen.org/publication/PubMed/15753571" }, { "database": "PubMed", "id": "14610360", "url": "https://glygen.org/publication/PubMed/14610360" }, { "database": "iPTMnet", "id": "P59169", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59169" } ], "site_lbl": "Ser29" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "32", "end_pos": "32" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P59169-1.11.11", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P59169-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P59169-1.32.32", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59259-1.81.81", "start_pos": 81, "end_pos": 81, "uniprot_canonical_ac": "P59259-1", "length": 103, "uniprot_id": "H4_ARATH", "protein_name": "Histone H4", "refseq_ac": "NP_001332089", "refseq_name": "Histone superfamily protein", "gene_name": "F16L2_140; F18L15.40; F24B9.25; F24B9.8; F5K20_30; F8N16.2; MMN10.22; MTH12.10; T11P11.4", "gene_names_uniprotkb": "F16L2_140; F18L15.40; F24B9.25; F24B9.8; F5K20_30; F8N16.2; MMN10.22; MTH12.10; T11P11.4", "gene_names_refseq": "MMN10.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59259", "url": "https://www.uniprot.org/uniprotkb/P59259" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P59259", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59259", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IFLENVIRDAVTYTEHARRK", "down_seq": "VTAMDVVYALKRQGRTLYGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59259", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59259" } ], "site_lbl": "Thr81" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "81", "end_pos": "81" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P59259-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P59259-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "P59259-1", "length": 103, "uniprot_id": "H4_ARATH", "protein_name": "Histone H4", "refseq_ac": "NP_001332089", "refseq_name": "Histone superfamily protein", "gene_name": "F16L2_140; F18L15.40; F24B9.25; F24B9.8; F5K20_30; F8N16.2; MMN10.22; MTH12.10; T11P11.4", "gene_names_uniprotkb": "F16L2_140; F18L15.40; F24B9.25; F24B9.8; F5K20_30; F8N16.2; MMN10.22; MTH12.10; T11P11.4", "gene_names_refseq": "MMN10.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P59259", "url": "https://www.uniprot.org/uniprotkb/P59259" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P59259", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59259", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DAVTYTEHARRKTVTAMDVV", "down_seq": "ALKRQGRTLYGFGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P59259", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59259" } ], "site_lbl": "Tyr89" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "81", "end_pos": "81" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P59259-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WV12-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q0WV12-1", "length": 802, "uniprot_id": "ANL2_ARATH", "protein_name": "Homeobox-leucine zipper protein ANTHOCYANINLESS 2", "refseq_ac": "NP_567183", "refseq_name": "Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein", "gene_name": "ANL2", "gene_names_uniprotkb": "ANL2; AHDP; ANTHOCYANINLESS 2; F6N23.10; F6N23_10; HOMEODOMAIN PROTEIN AHDP", "gene_names_refseq": "AHDP; ANL2; ANTHOCYANINLESS 2; ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN; F6N23.10; F6N23_10; HOMEODOMAIN PROTEIN AHDP", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WV12", "url": "https://www.uniprot.org/uniprotkb/Q0WV12" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WV12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WV12" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q0WV12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WV12", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNFGSLFDNTPGGG", "down_seq": "TGARLLSGLSYGNHTAATNV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WV12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WV12" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54888-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "P54888-1", "length": 726, "uniprot_id": "P5CS2_ARATH", "protein_name": "Delta-1-pyrroline-5-carboxylate synthase B", "refseq_ac": "NP_191120", "refseq_name": "delta 1-pyrroline-5-carboxylate synthase 2", "gene_name": "P5CS2; P5CSB", "gene_names_uniprotkb": "P5CS2; P5CSB; F1I16_20; P5CS2", "gene_names_refseq": "P5CS2; delta 1-pyrroline-5-carboxylate synthase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P54888", "url": "https://www.uniprot.org/uniprotkb/P54888" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSSGAVGLGRQRLRYRQLVN", "down_seq": "SFADLQKPQMELDGKACAGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser78" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P54888-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54888-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "P54888-1", "length": 726, "uniprot_id": "P5CS2_ARATH", "protein_name": "Delta-1-pyrroline-5-carboxylate synthase B", "refseq_ac": "NP_191120", "refseq_name": "delta 1-pyrroline-5-carboxylate synthase 2", "gene_name": "P5CS2; P5CSB", "gene_names_uniprotkb": "P5CS2; P5CSB; F1I16_20; P5CS2", "gene_names_refseq": "P5CS2; delta 1-pyrroline-5-carboxylate synthase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P54888", "url": "https://www.uniprot.org/uniprotkb/P54888" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P54888-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSGAVGLGRQRLRYRQLVNS", "down_seq": "FADLQKPQMELDGKACAGVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P54888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54888" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P54888-1.78.78", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WT48-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "Q0WT48-1", "length": 687, "uniprot_id": "DNJ21_ARATH", "protein_name": "DnaJ protein ERDJ2A", "refseq_ac": "NP_001031306", "refseq_name": "DnaJ / Sec63 Brl domains-containing protein", "gene_name": "ATERDJ2A; ERDJ2A", "gene_names_uniprotkb": "ATERDJ2A; ERDJ2A; C21; F18B13.2; F19K16.10; F19K16_10", "gene_names_refseq": "ATERDJ2A; F19K16.10; F19K16_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WT48", "url": "https://www.uniprot.org/uniprotkb/Q0WT48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q0WT48", "url": "https://www.uniprot.org/uniprotkb/Q0WT48", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SNLTLVLLWVVMIFLIYYTK", "down_seq": "MSREAQVFDPFSILGLEPGV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn90", "evidence": [ { "id": "Q0WT48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q0WT48#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "412", "end_pos": "412" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WT48-1.412.412", "start_pos": 412, "end_pos": 412, "uniprot_canonical_ac": "Q0WT48-1", "length": 687, "uniprot_id": "DNJ21_ARATH", "protein_name": "DnaJ protein ERDJ2A", "refseq_ac": "NP_001031306", "refseq_name": "DnaJ / Sec63 Brl domains-containing protein", "gene_name": "ATERDJ2A; ERDJ2A", "gene_names_uniprotkb": "ATERDJ2A; ERDJ2A; C21; F18B13.2; F19K16.10; F19K16_10", "gene_names_refseq": "ATERDJ2A; F19K16.10; F19K16_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WT48", "url": "https://www.uniprot.org/uniprotkb/Q0WT48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WT48" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WT48" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WT48" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q0WT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WT48" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q0WT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WT48", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQLPHFSDAVVKKIARKKVK", "down_seq": "FQDLQEMRLEDRSELLTQVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WT48" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser412" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "412", "end_pos": "412" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05431-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "Q05431-1", "length": 250, "uniprot_id": "APX1_ARATH", "protein_name": "L-ascorbate peroxidase 1, cytosolic", "refseq_ac": "NP_001030991", "refseq_name": "ascorbate peroxidase 1", "gene_name": "APX1", "gene_names_uniprotkb": "APX1; ASCORBATE PEROXIDASE; ATAPX01; ATAPX1; CS1; F24B9.2; F24B9_2; MEE6; ascorbate peroxidase 1", "gene_names_refseq": "APX1; ASCORBATE PEROXIDASE; ATAPX01; ATAPX1; CS1; F24B9.2; F24B9_2; MEE6; ascorbate peroxidase 1; maternal effect embryo arrest 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q05431", "url": "https://www.uniprot.org/uniprotkb/Q05431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "Q05431", "url": "https://www.uniprot.org/uniprotkb/Q05431" }, { "database": "iPTMnet", "id": "Q05431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05431" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "Q05431", "url": "https://www.uniprot.org/uniprotkb/Q05431", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q05431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05431", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGAWTSNPLIFDNSYFKELL", "down_seq": "GEKEGLLQLVSDKALLDDPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05431", "url": "https://www.uniprot.org/uniprotkb/Q05431" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "Q05431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05431" } ], "site_lbl": "Ser196" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92981-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "P92981-1", "length": 454, "uniprot_id": "APR2_ARATH", "protein_name": "5'-adenylylsulfate reductase 2, chloroplastic", "refseq_ac": "NP_176409", "refseq_name": "5'adenylylphosphosulfate reductase 2", "gene_name": "APR2", "gene_names_uniprotkb": "APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "gene_names_refseq": "3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE (PAPS) REDUCTASE HOMOLOG 43; 5'adenylylphosphosulfate reductase 2; ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE; APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant adenosine 5'-phosphosulfate reductase is a novel iron-sulfur protein.", "journal": "The Journal of biological chemistry", "date": "2001-11-16", "authors": "Kopriva S, B\u00fcchert T, Fritz G, Suter M, Weber M, Benda R, Schaller J, Feller U, Sch\u00fcrmann P, Sch\u00fcnemann V, Trautwein A X, Kroneck P M, Brunold C", "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" } ], "reference": [ { "type": "PubMed", "id": "11553635", "url": "https://glygen.org/publication/PubMed/11553635" } ] } ], "crossref": [ { "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11553635", "url": "https://glygen.org/publication/PubMed/11553635", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "QALVRNKGLFSFYEDGHQEC", "down_seq": "RVRKVRPLRRALKGLKAWIT", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Slightly reduces activity.", "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" }, { "database": "PubMed", "id": "11553635", "url": "https://glygen.org/publication/PubMed/11553635" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92981-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "P92981-1", "length": 454, "uniprot_id": "APR2_ARATH", "protein_name": "5'-adenylylsulfate reductase 2, chloroplastic", "refseq_ac": "NP_176409", "refseq_name": "5'adenylylphosphosulfate reductase 2", "gene_name": "APR2", "gene_names_uniprotkb": "APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "gene_names_refseq": "3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE (PAPS) REDUCTASE HOMOLOG 43; 5'adenylylphosphosulfate reductase 2; ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE; APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant adenosine 5'-phosphosulfate reductase is a novel iron-sulfur protein.", "journal": "The Journal of biological chemistry", "date": "2001-11-16", "authors": "Kopriva S, B\u00fcchert T, Fritz G, Suter M, Weber M, Benda R, Schaller J, Feller U, Sch\u00fcrmann P, Sch\u00fcnemann V, Trautwein A X, Kroneck P M, Brunold C", "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" } ], "reference": [ { "type": "PubMed", "id": "11553635", "url": "https://glygen.org/publication/PubMed/11553635" } ] } ], "crossref": [ { "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11553635", "url": "https://glygen.org/publication/PubMed/11553635", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "LPGQHEREGRWWWEDAKAKE", "down_seq": "GLHKGNIKEEDGAADSKPAA", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes activity.", "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" }, { "database": "PubMed", "id": "11553635", "url": "https://glygen.org/publication/PubMed/11553635" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92981-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "P92981-1", "length": 454, "uniprot_id": "APR2_ARATH", "protein_name": "5'-adenylylsulfate reductase 2, chloroplastic", "refseq_ac": "NP_176409", "refseq_name": "5'adenylylphosphosulfate reductase 2", "gene_name": "APR2", "gene_names_uniprotkb": "APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "gene_names_refseq": "3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE (PAPS) REDUCTASE HOMOLOG 43; 5'adenylylphosphosulfate reductase 2; ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE; APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MALAVTSSSTAISG", "down_seq": "SFSRSGASSESKALQICSIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P92981-1.18.18", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92981-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92981-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "P92981-1", "length": 454, "uniprot_id": "APR2_ARATH", "protein_name": "5'-adenylylsulfate reductase 2, chloroplastic", "refseq_ac": "NP_176409", "refseq_name": "5'adenylylphosphosulfate reductase 2", "gene_name": "APR2", "gene_names_uniprotkb": "APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "gene_names_refseq": "3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE (PAPS) REDUCTASE HOMOLOG 43; 5'adenylylphosphosulfate reductase 2; ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE; APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MALAVTSSSTAISGSSF", "down_seq": "RSGASSESKALQICSIRLSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Ser18" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P92981-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92981-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92981-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "P92981-1", "length": 454, "uniprot_id": "APR2_ARATH", "protein_name": "5'-adenylylsulfate reductase 2, chloroplastic", "refseq_ac": "NP_176409", "refseq_name": "5'adenylylphosphosulfate reductase 2", "gene_name": "APR2", "gene_names_uniprotkb": "APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "gene_names_refseq": "3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE (PAPS) REDUCTASE HOMOLOG 43; 5'adenylylphosphosulfate reductase 2; ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE; APR2; APS REDUCTASE; APSR; ATAPR2; F19K23.11; F19K23_11; PRH43; PRH", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92981", "url": "https://www.uniprot.org/uniprotkb/P92981" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "", "down_seq": "GASSESKALQICSIRLSDRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92981", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92981" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Ser20" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "314", "end_pos": "314" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P92981-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92981-1.18.18", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P50318-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P50318-1", "length": 478, "uniprot_id": "PGKH2_ARATH", "protein_name": "Phosphoglycerate kinase 2, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "CPGK2", "gene_names_uniprotkb": "CPGK2; F14G9.19; F14G9_19; T6H22.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50318", "url": "https://www.uniprot.org/uniprotkb/P50318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ASTAATAALSIIKSTGGAAV", "down_seq": "RSSRASFGHIPSTSVSARRL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr22", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P50318-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "P50318-1", "length": 478, "uniprot_id": "PGKH2_ARATH", "protein_name": "Phosphoglycerate kinase 2, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "CPGK2", "gene_names_uniprotkb": "CPGK2; F14G9.19; F14G9_19; T6H22.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50318", "url": "https://www.uniprot.org/uniprotkb/P50318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DYLVGAVSNPKRPFAAIVGG", "down_seq": "KVSSKIGVIESLLEKCDILL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser273" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P50318-1.276.276", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P50318-1.277.277", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P50318-1.276.276", "start_pos": 276, "end_pos": 276, "uniprot_canonical_ac": "P50318-1", "length": 478, "uniprot_id": "PGKH2_ARATH", "protein_name": "Phosphoglycerate kinase 2, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "CPGK2", "gene_names_uniprotkb": "CPGK2; F14G9.19; F14G9_19; T6H22.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50318", "url": "https://www.uniprot.org/uniprotkb/P50318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VGAVSNPKRPFAAIVGGSKV", "down_seq": "SKIGVIESLLEKCDILLLGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser276" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P50318-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P50318-1.277.277", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P50318-1.277.277", "start_pos": 277, "end_pos": 277, "uniprot_canonical_ac": "P50318-1", "length": 478, "uniprot_id": "PGKH2_ARATH", "protein_name": "Phosphoglycerate kinase 2, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "CPGK2", "gene_names_uniprotkb": "CPGK2; F14G9.19; F14G9_19; T6H22.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50318", "url": "https://www.uniprot.org/uniprotkb/P50318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] } ], "crossref": [ { "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GAVSNPKRPFAAIVGGSKVS", "down_seq": "KIGVIESLLEKCDILLLGGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ], "site_lbl": "Ser277" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P50318-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P50318-1.276.276", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P50318-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "P50318-1", "length": 478, "uniprot_id": "PGKH2_ARATH", "protein_name": "Phosphoglycerate kinase 2, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "CPGK2", "gene_names_uniprotkb": "CPGK2; F14G9.19; F14G9_19; T6H22.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50318", "url": "https://www.uniprot.org/uniprotkb/P50318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P50318", "url": "https://www.uniprot.org/uniprotkb/P50318", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKVHSVRGKGARGVITMAKK", "down_seq": "VGDLNSVDLKGKKVFVRADL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P50318", "url": "https://www.uniprot.org/uniprotkb/P50318" } ], "site_lbl": "Ser78" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P50318-1.84.84", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P50318-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "P50318-1", "length": 478, "uniprot_id": "PGKH2_ARATH", "protein_name": "Phosphoglycerate kinase 2, chloroplastic", "refseq_ac": "", "refseq_name": "", "gene_name": "CPGK2", "gene_names_uniprotkb": "CPGK2; F14G9.19; F14G9_19; T6H22.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P50318", "url": "https://www.uniprot.org/uniprotkb/P50318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] } ], "crossref": [ { "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGKGARGVITMAKKSVGDLN", "down_seq": "VDLKGKKVFVRADLNVPLDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P50318", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P50318" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ], "site_lbl": "Ser84" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "273", "end_pos": "273" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P50318-1.78.78", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39083-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "Q39083-1", "length": 206, "uniprot_id": "DI191_ARATH", "protein_name": "Protein DEHYDRATION-INDUCED 19", "refseq_ac": "NP_564715", "refseq_name": "drought-induced 19", "gene_name": "DI19-1; DI19", "gene_names_uniprotkb": "DI19-1; DI19; ATDI19; DI19; F14G9.11; F14G9_11; drought-induced 19", "gene_names_refseq": "ATDI19; DI19; F14G9.11; F14G9_11; drought-induced 19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39083", "url": "https://www.uniprot.org/uniprotkb/Q39083" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A novel yeast two-hybrid approach to identify CDPK substrates: characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein.", "journal": "FEBS letters", "date": "2006-02-06", "authors": "Rodriguez Milla Miguel A, Uno Yuichi, Chang Ing-Feng, Townsend Jared, Maher Eileen A, Quilici David, Cushman John C", "evidence": [ { "database": "UniProtKB", "id": "Q39083", "url": "https://www.uniprot.org/uniprotkb/Q39083" }, { "database": "iPTMnet", "id": "Q39083", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39083" } ], "reference": [ { "type": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" } ] } ], "crossref": [ { "id": "Q39083", "url": "https://www.uniprot.org/uniprotkb/Q39083", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39083", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39083", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HGSLFKLQRKRKSRKSGTNS", "down_seq": "LSLLRKELREGDLQRLLGFT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q39083", "url": "https://www.uniprot.org/uniprotkb/Q39083" }, { "database": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" }, { "database": "iPTMnet", "id": "Q39083", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39083" } ], "site_lbl": "Thr105" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "107", "end_pos": "107" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q39083-1.107.107", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39083-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "Q39083-1", "length": 206, "uniprot_id": "DI191_ARATH", "protein_name": "Protein DEHYDRATION-INDUCED 19", "refseq_ac": "NP_564715", "refseq_name": "drought-induced 19", "gene_name": "DI19-1; DI19", "gene_names_uniprotkb": "DI19-1; DI19; ATDI19; DI19; F14G9.11; F14G9_11; drought-induced 19", "gene_names_refseq": "ATDI19; DI19; F14G9.11; F14G9_11; drought-induced 19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39083", "url": "https://www.uniprot.org/uniprotkb/Q39083" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A novel yeast two-hybrid approach to identify CDPK substrates: characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein.", "journal": "FEBS letters", "date": "2006-02-06", "authors": "Rodriguez Milla Miguel A, Uno Yuichi, Chang Ing-Feng, Townsend Jared, Maher Eileen A, Quilici David, Cushman John C", "evidence": [ { "database": "UniProtKB", "id": "Q39083", "url": "https://www.uniprot.org/uniprotkb/Q39083" }, { "database": "iPTMnet", "id": "Q39083", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39083" } ], "reference": [ { "type": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" } ] } ], "crossref": [ { "id": "Q39083", "url": "https://www.uniprot.org/uniprotkb/Q39083", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39083", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q39083*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "Q39083", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39083", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLFKLQRKRKSRKSGTNSTL", "down_seq": "LLRKELREGDLQRLLGFTSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39083", "url": "https://www.uniprot.org/uniprotkb/Q39083" }, { "database": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" }, { "database": "IntAct", "id": "Q39083", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q39083*" }, { "database": "iPTMnet", "id": "Q39083", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39083" } ], "site_lbl": "Ser107" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "107", "end_pos": "107" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q39083-1.105.105", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92947-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "P92947-1", "length": 493, "uniprot_id": "MDAR_ARATH", "protein_name": "Monodehydroascorbate reductase, chloroplastic/mitochondrial", "refseq_ac": "NP_564818", "refseq_name": "monodehydroascorbate reductase 6", "gene_name": "MDAR5; MDAR6", "gene_names_uniprotkb": "MDAR5; MDAR6; MDAR6; MDHAR6; PMDAR-L; PMDAR-S; T12P18.4", "gene_names_refseq": "MDAR6; monodehydroascorbate reductase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92947", "url": "https://www.uniprot.org/uniprotkb/P92947" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKIGGHLPGVHYIREVADAD", "down_seq": "LIASLGKAKKIVIVGGGYIG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser208" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "407", "end_pos": "407" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92947-1.407.407", "start_pos": 407, "end_pos": 407, "uniprot_canonical_ac": "P92947-1", "length": 493, "uniprot_id": "MDAR_ARATH", "protein_name": "Monodehydroascorbate reductase, chloroplastic/mitochondrial", "refseq_ac": "NP_564818", "refseq_name": "monodehydroascorbate reductase 6", "gene_name": "MDAR5; MDAR6", "gene_names_uniprotkb": "MDAR5; MDAR6; MDAR6; MDHAR6; PMDAR-L; PMDAR-S; T12P18.4", "gene_names_refseq": "MDAR6; monodehydroascorbate reductase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92947", "url": "https://www.uniprot.org/uniprotkb/P92947" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HTDTYDYLPYFYSRVFEYEG", "down_seq": "PRKVWWQFFGDNVGETVEVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92947", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92947" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser407" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "407", "end_pos": "407" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.865.865", "start_pos": 865, "end_pos": 865, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The CW domain, a new histone recognition module in chromatin proteins.", "journal": "The EMBO journal", "date": "2011-05-18", "authors": "Hoppmann Verena, Thorstensen Tage, Kristiansen Per Eugen, Veiseth Silje Veie, Rahman Mohummad Aminur, Finne Kenneth, Aalen Reidunn B, Aasland Rein", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "THGEMVVDVTIEDSYSTESA", "down_seq": "VRCDDCFKWRRIPASVVGSI", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Loss of histone tail binding.", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" }, { "database": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q2LAE1-1.874.874", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.874.874", "start_pos": 874, "end_pos": 874, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The CW domain, a new histone recognition module in chromatin proteins.", "journal": "The EMBO journal", "date": "2011-05-18", "authors": "Hoppmann Verena, Thorstensen Tage, Kristiansen Per Eugen, Veiseth Silje Veie, Rahman Mohummad Aminur, Finne Kenneth, Aalen Reidunn B, Aasland Rein", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "TIEDSYSTESAWVRCDDCFK", "down_seq": "RRIPASVVGSIDESSRWICM", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Loss of histone tail binding.", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" }, { "database": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q2LAE1-1.865.865", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q2LAE1-1.891.891", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.891.891", "start_pos": 891, "end_pos": 891, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The CW domain, a new histone recognition module in chromatin proteins.", "journal": "The EMBO journal", "date": "2011-05-18", "authors": "Hoppmann Verena, Thorstensen Tage, Kristiansen Per Eugen, Veiseth Silje Veie, Rahman Mohummad Aminur, Finne Kenneth, Aalen Reidunn B, Aasland Rein", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "CFKWRRIPASVVGSIDESSR", "down_seq": "ICMNNSDKRFADCSKSQEMS", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Loss of histone tail binding.", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" }, { "database": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q2LAE1-1.874.874", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q2LAE1-1.908.908", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q2LAE1-1.909.909", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.908.908", "start_pos": 908, "end_pos": 908, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The CW domain, a new histone recognition module in chromatin proteins.", "journal": "The EMBO journal", "date": "2011-05-18", "authors": "Hoppmann Verena, Thorstensen Tage, Kristiansen Per Eugen, Veiseth Silje Veie, Rahman Mohummad Aminur, Finne Kenneth, Aalen Reidunn B, Aasland Rein", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "SSRWICMNNSDKRFADCSKS", "down_seq": "EMSNEEINEELGIGQDEADA", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "A", "comment": "Loss of histone tail binding.", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" }, { "database": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q2LAE1-1.891.891", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q2LAE1-1.909.909", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.909.909", "start_pos": 909, "end_pos": 909, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The CW domain, a new histone recognition module in chromatin proteins.", "journal": "The EMBO journal", "date": "2011-05-18", "authors": "Hoppmann Verena, Thorstensen Tage, Kristiansen Per Eugen, Veiseth Silje Veie, Rahman Mohummad Aminur, Finne Kenneth, Aalen Reidunn B, Aasland Rein", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "SRWICMNNSDKRFADCSKSQ", "down_seq": "MSNEEINEELGIGQDEADAY", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of histone tail binding.", "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" }, { "database": "PubMed", "id": "21522130", "url": "https://glygen.org/publication/PubMed/21522130" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q2LAE1-1.891.891", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q2LAE1-1.908.908", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1284.1284", "start_pos": 1284, "end_pos": 1284, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSGISITAVQQEVPAEKKTK", "down_seq": "TSPTSSSLSRMSPGGTNSDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1284" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q2LAE1-1.1285.1285", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q2LAE1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q2LAE1-1.1289.1289", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q2LAE1-1.1290.1290", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q2LAE1-1.1296.1296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1285.1285", "start_pos": 1285, "end_pos": 1285, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGISITAVQQEVPAEKKTKS", "down_seq": "SPTSSSLSRMSPGGTNSDKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr1285" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q2LAE1-1.1284.1284", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q2LAE1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q2LAE1-1.1289.1289", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q2LAE1-1.1290.1290", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q2LAE1-1.1296.1296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1286.1286", "start_pos": 1286, "end_pos": 1286, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GISITAVQQEVPAEKKTKST", "down_seq": "PTSSSLSRMSPGGTNSDKTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1286" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q2LAE1-1.1284.1284", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q2LAE1-1.1285.1285", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q2LAE1-1.1289.1289", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q2LAE1-1.1290.1290", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q2LAE1-1.1296.1296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1289.1289", "start_pos": 1289, "end_pos": 1289, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ITAVQQEVPAEKKTKSTSPT", "down_seq": "SSLSRMSPGGTNSDKTTKHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1289" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q2LAE1-1.1284.1284", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q2LAE1-1.1285.1285", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q2LAE1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q2LAE1-1.1290.1290", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q2LAE1-1.1296.1296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1290.1290", "start_pos": 1290, "end_pos": 1290, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAVQQEVPAEKKTKSTSPTS", "down_seq": "SLSRMSPGGTNSDKTTKHGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1290" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q2LAE1-1.1284.1284", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q2LAE1-1.1285.1285", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q2LAE1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q2LAE1-1.1289.1289", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q2LAE1-1.1296.1296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1296.1296", "start_pos": 1296, "end_pos": 1296, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPAEKKTKSTSPTSSSLSRM", "down_seq": "PGGTNSDKTTKHGSGEDKKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1296" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q2LAE1-1.1284.1284", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q2LAE1-1.1285.1285", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q2LAE1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q2LAE1-1.1289.1289", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q2LAE1-1.1290.1290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1503.1503", "start_pos": 1503, "end_pos": 1503, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKHFRKPWRINREERSESMR", "down_seq": "PINRRFRASQEPRYDHQSPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1503" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q2LAE1-1.1512.1512", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q2LAE1-1.1521.1521", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1512.1512", "start_pos": 1512, "end_pos": 1512, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "INREERSESMRSPINRRFRA", "down_seq": "QEPRYDHQSPRPAEPAASVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1512" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q2LAE1-1.1503.1503", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q2LAE1-1.1521.1521", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2LAE1-1.1521.1521", "start_pos": 1521, "end_pos": 1521, "uniprot_canonical_ac": "Q2LAE1-1", "length": 1759, "uniprot_id": "ASHH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase ASHH2", "refseq_ac": "NP_177854", "refseq_name": "histone-lysine N-methyltransferase", "gene_name": "ASHH2; EFS", "gene_names_uniprotkb": "ASHH2; EFS; ASH1 HOMOLOG 2; ASHH2; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; SET8; T14N5.15; T14N5_15", "gene_names_refseq": "ASH1 HOMOLOG 2; ASHH2; CAROTENOID CHLOROPLAST REGULATORY1; CCR1; EARLY FLOWERING IN SHORT DAYS; EFS; LAZ2; LAZARUS 2; SDG8; SET DOMAIN GROUP 8; T14N5.15; T14N5_15", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q2LAE1", "url": "https://www.uniprot.org/uniprotkb/Q2LAE1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRSPINRRFRASQEPRYDHQ", "down_seq": "PRPAEPAASVTSSKAATPET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q2LAE1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2LAE1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1521" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "865", "end_pos": "865" }, { "start_pos": "874", "end_pos": "874" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "908", "end_pos": "908" }, { "start_pos": "909", "end_pos": "909" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1284", "end_pos": "1284" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1289", "end_pos": "1289" }, { "start_pos": "1290", "end_pos": "1290" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1512", "end_pos": "1512" }, { "start_pos": "1521", "end_pos": "1521" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q2LAE1-1.1503.1503", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q2LAE1-1.1512.1512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] } ]